BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF625661.2|BF625661 HVSMEa0013C18f Hordeum vulgare seedl... 94 2e-017
gb|BF624099.3|BF624099 HVSMEa0009I02f Hordeum vulgare seedl... 94 2e-017
gb|BF631617.2|BF631617 HVSMEb0016K07f Hordeum vulgare seedl... 94 2e-017
gb|BF256372.2|BF256372 HVSMEf0009G12f Hordeum vulgare seedl... 94 2e-017
gb|BE213788.1|BE213788 HV_CEb0001E12f Hordeum vulgare seedl... 94 2e-017
gb|BF264795.1|BF264795 HV_CEa0010G08f Hordeum vulgare seedl... 94 2e-017
gb|BE216623.2|BE216623 HV_CEb0010P19f Hordeum vulgare seedl... 94 2e-017
gb|BG365693.2|BG365693 HVSMEi0003M06f Hordeum vulgare 20 DA... 94 2e-017
gb|BE558276.2|BE558276 HV_CEb0017A19f Hordeum vulgare seedl... 94 2e-017
gb|AV925389.1|AV925389 AV925389 K. Sato unpublished cDNA li... 94 2e-017
gb|BQ467976.1|BQ467976 HR01I12r HR Hordeum vulgare subsp. v... 94 2e-017
gb|BQ471145.1|BQ471145 HV01D01T HV Hordeum vulgare subsp. v... 94 2e-017
gb|BQ471792.1|BQ471792 HV03H22r HV Hordeum vulgare subsp. v... 94 2e-017
gb|CA008921.1|CA008921 HU12I16r HU Hordeum vulgare subsp. v... 94 2e-017
gb|CA019917.1|CA019917 HV13L09r HV Hordeum vulgare subsp. v... 94 2e-017
gb|CA025023.1|CA025023 HZ51A03r HZ Hordeum vulgare subsp. v... 94 2e-017
gb|CB882606.1|CB882606 HL02F15w HL Hordeum vulgare subsp. v... 94 2e-017
gb|BI952890.1|BI952890 HVSMEm0008D15f Hordeum vulgare green... 92 6e-017
gb|BE213833.1|BE213833 HV_CEb0001G10f Hordeum vulgare seedl... 86 4e-015
gb|BI959700.1|BI959700 HVSMEn0020N17f Hordeum vulgare rachi... 80 2e-013
gb|BJ464204.1|BJ464204 BJ464204 K. Sato unpublished cDNA li... 80 2e-013
gb|BF256657.2|BF256657 HVSMEf0010J23f Hordeum vulgare seedl... 74 1e-011
gb|BF267713.2|BF267713 HV_CEa0018K22f Hordeum vulgare seedl... 70 2e-010
gb|BQ471140.1|BQ471140 HV01B20T HV Hordeum vulgare subsp. v... 70 2e-010
gb|BQ471157.1|BQ471157 HV01F03T HV Hordeum vulgare subsp. v... 70 2e-010
gb|BQ762725.1|BQ762725 EBro02_SQ004_J24 _R root, 3 week, hy... 70 2e-010
gb|CB884207.1|CB884207 HV11M07r HV Hordeum vulgare subsp. v... 70 2e-010
gb|AL504152.1|AL504152 AL504152 Hordeum vulgare Barke roots... 66 4e-009
emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cystein... 66 4e-009
emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cystein... 66 4e-009
gb|BJ470509.1|BJ470509 BJ470509 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ470713.1|BJ470713 BJ470713 K. Sato unpublished cDNA li... 64 1e-008
gb|BM097386.2|BM097386 EBro01_SQ004_P20_R root, 3 week, hyd... 62 6e-008
gb|BI956727.1|BI956727 HVSMEn0005A04f Hordeum vulgare rachi... 58 9e-007
gb|BQ767647.1|BQ767647 EBro08_SQ009_P12_R root, 3 week, dro... 56 3e-006
gb|BF258102.2|BF258102 HVSMEf0014M15f Hordeum vulgare seedl... 54 1e-005
gb|BE216298.2|BE216298 HV_CEb0010C01f Hordeum vulgare seedl... 54 1e-005
emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cystein... 52 5e-005
gb|BG343507.1|BG343507 HVSMEg0005P07f Hordeum vulgare pre-a... 50 2e-004
gb|BI960036.1|BI960036 HVSMEn0022P09f Hordeum vulgare rachi... 50 2e-004
gb|AJ461406.1|AJ461406 AJ461406 S00002 Hordeum vulgare subs... 50 2e-004
gb|AJ461407.1|AJ461407 AJ461407 S00002 Hordeum vulgare subs... 50 2e-004
gb|BQ664085.1|BQ664085 HV01L06w HV Hordeum vulgare subsp. v... 50 2e-004
gb|BQ763183.1|BQ763183 EBro02_SQ007_A15_R root, 3 week, hyd... 50 2e-004
gb|CB884204.1|CB884204 HV10K10u HV Hordeum vulgare subsp. v... 50 2e-004
gb|CB884208.1|CB884208 HV11M07u HV Hordeum vulgare subsp. v... 50 2e-004
emb|A98645.1| Sequence 1 from Patent WO9910500 50 2e-004
gb|AV915782.1|AV915782 AV915782 K. Sato unpublished cDNA li... 48 8e-004
gb|BQ471297.1|BQ471297 HV02B01r HV Hordeum vulgare subsp. v... 48 8e-004
gb|BQ472128.1|BQ472128 HV04H20r HV Hordeum vulgare subsp. v... 48 8e-004
gb|CA013849.1|CA013849 HT09K13r HT Hordeum vulgare subsp. v... 48 8e-004
gb|CA018792.1|CA018792 HV09K16r HV Hordeum vulgare subsp. v... 48 8e-004
gb|CB879132.1|CB879132 HP11A19T HP Hordeum vulgare subsp. v... 48 8e-004
gb|CB882748.1|CB882748 HL02L21w HL Hordeum vulgare subsp. v... 48 8e-004
gb|CD663813.1|CD663813 UCRHV18_06ch09_b1 Drought-stressed D... 48 8e-004
gb|U19359.1|HVU19359 Hordeum vulgare cysteine proteinase EP... 48 8e-004
gb|U19384.1|HVU19384 Hordeum vulgare cysteine proteinase EP... 48 8e-004
gb|BE454945.2|BE454945 HVSMEh0095J20f Hordeum vulgare 5-45 ... 46 0.003
gb|BE603193.3|BE603193 HVSMEh0102H11f Hordeum vulgare 5-45 ... 46 0.003
gb|BJ472680.1|BJ472680 BJ472680 K. Sato unpublished cDNA li... 46 0.003
gb|CA018921.1|CA018921 HV10A20r HV Hordeum vulgare subsp. v... 46 0.003
gb|CB882564.1|CB882564 HL02D14w HL Hordeum vulgare subsp. v... 46 0.003
gb|AJ461023.1|AJ461023 AJ461023 S00002 Hordeum vulgare subs... 44 0.013
gb|AJ461024.1|AJ461024 AJ461024 S00002 Hordeum vulgare subs... 44 0.013
gb|AJ461045.1|AJ461045 AJ461045 S00002 Hordeum vulgare subs... 44 0.013
gb|BQ664707.1|BQ664707 HV04H20u HV Hordeum vulgare subsp. v... 44 0.013
gb|BQ757301.1|BQ757301 EBem10_SQ003_K07_R embryo, 2 Day ger... 44 0.013
gb|BU999912.1|BU999912 HS16O03u HS Hordeum vulgare subsp. v... 44 0.013
gb|CA001299.1|CA001299 HS18F20u HS Hordeum vulgare subsp. v... 44 0.013
gb|CA016223.1|CA016223 HV09K16u HV Hordeum vulgare subsp. v... 44 0.013
gb|CA016873.1|CA016873 HV05P19u HV Hordeum vulgare subsp. v... 44 0.013
gb|CA016925.1|CA016925 HV05J07u HV Hordeum vulgare subsp. v... 44 0.013
gb|CA019632.1|CA019632 HV12J22r HV Hordeum vulgare subsp. v... 44 0.013
gb|CB884194.1|CB884194 HV08J05u HV Hordeum vulgare subsp. v... 44 0.013
gb|AL501368.1|AL501368 AL501368 Hordeum vulgare Barke roots... 42 0.051
gb|AL503956.1|AL503956 AL503956 Hordeum vulgare Barke roots... 42 0.051
gb|BG415364.1|BG415364 HVSMEk0006D05f Hordeum vulgare testa... 42 0.051
gb|BF628689.3|BF628689 HVSMEb0007C07f Hordeum vulgare seedl... 42 0.051
gb|BF256849.3|BF256849 HVSMEf0011C24f Hordeum vulgare seedl... 42 0.051
gb|BE455678.3|BE455678 HVSMEg0018N22f Hordeum vulgare pre-a... 42 0.051
gb|BG415730.2|BG415730 HVSMEk0007J21f Hordeum vulgare testa... 42 0.051
gb|BM100328.1|BM100328 EBma01_SQ001_N23_R maternal, 4 DPA, ... 42 0.051
gb|AV927688.1|AV927688 AV927688 K. Sato unpublished cDNA li... 42 0.051
gb|AV931801.1|AV931801 AV931801 K. Sato unpublished cDNA li... 42 0.051
gb|BQ469352.1|BQ469352 HM04E11r HM Hordeum vulgare subsp. v... 42 0.051
gb|BQ661802.1|BQ661802 HP01F19w HP Hordeum vulgare subsp. v... 42 0.051
gb|BQ664005.1|BQ664005 HV01B20w HV Hordeum vulgare subsp. v... 42 0.051
gb|BM442118.2|BM442118 EBan01_SQ002_E07_R anther, yellow st... 42 0.051
gb|BM442282.2|BM442282 EBan01_SQ002_M05_R anther, yellow st... 42 0.051
gb|BQ758058.1|BQ758058 EBes01_SQ001_O16_R embryo sac, 4-6 D... 42 0.051
gb|BQ762862.1|BQ762862 EBro02_SQ006_H09_R root, 3 week, hyd... 42 0.051
gb|BQ765039.1|BQ765039 EBca01_SQ005_J16_R carpel, pre-anthe... 42 0.051
gb|BU988225.1|BU988225 HF17A14r HF Hordeum vulgare subsp. v... 42 0.051
gb|CA026404.1|CA026404 HZ55N04r HZ Hordeum vulgare subsp. v... 42 0.051
gb|CB879561.1|CB879561 HP02L18w HP Hordeum vulgare subsp. v... 42 0.051
gb|AL505138.1|AL505138 AL505138 Hordeum vulgare Barke roots... 40 0.20
gb|AL506426.1|AL506426 AL506426 Hordeum vulgare Barke devel... 40 0.20
gb|AL506692.1|AL506692 AL506692 Hordeum vulgare Barke devel... 40 0.20
gb|AL508527.1|AL508527 AL508527 Hordeum vulgare Barke devel... 40 0.20
gb|BF623694.2|BF623694 HVSMEa0003M22f Hordeum vulgare seedl... 40 0.20
gb|BF621303.2|BF621303 HVSMEa0006G17f Hordeum vulgare seedl... 40 0.20
gb|BF629594.1|BF629594 HVSMEb0013H11f Hordeum vulgare seedl... 40 0.20
gb|BI957425.1|BI957425 HVSMEn0009H13f Hordeum vulgare rachi... 40 0.20
gb|BF065556.2|BF065556 HV_CEb0012M06f Hordeum vulgare seedl... 40 0.20
gb|BF266524.2|BF266524 HV_CEa0015F21f Hordeum vulgare seedl... 40 0.20
gb|BG300109.2|BG300109 HVSMEb0011I20f Hordeum vulgare seedl... 40 0.20
gb|BF630701.3|BF630701 HVSMEb0013D24f Hordeum vulgare seedl... 40 0.20
gb|BF261171.3|BF261171 HVSMEf0023P03f Hordeum vulgare seedl... 40 0.20
gb|BE216282.3|BE216282 HV_CEb0010B08f Hordeum vulgare seedl... 40 0.20
gb|AV932232.1|AV932232 AV932232 K. Sato unpublished cDNA li... 40 0.20
gb|AV932233.1|AV932233 AV932233 K. Sato unpublished cDNA li... 40 0.20
gb|AV935072.1|AV935072 AV935072 K. Sato unpublished cDNA li... 40 0.20
gb|AV935073.1|AV935073 AV935073 K. Sato unpublished cDNA li... 40 0.20
gb|AJ461308.1|AJ461308 AJ461308 S00002 Hordeum vulgare subs... 40 0.20
gb|BJ466665.1|BJ466665 BJ466665 K. Sato unpublished cDNA li... 40 0.20
gb|BJ469738.1|BJ469738 BJ469738 K. Sato unpublished cDNA li... 40 0.20
gb|BJ469782.1|BJ469782 BJ469782 K. Sato unpublished cDNA li... 40 0.20
gb|BJ471824.1|BJ471824 BJ471824 K. Sato unpublished cDNA li... 40 0.20
gb|BJ471946.1|BJ471946 BJ471946 K. Sato unpublished cDNA li... 40 0.20
gb|BJ473035.1|BJ473035 BJ473035 K. Sato unpublished cDNA li... 40 0.20
gb|BJ475167.1|BJ475167 BJ475167 K. Sato unpublished cDNA li... 40 0.20
gb|BJ476828.1|BJ476828 BJ476828 K. Sato unpublished cDNA li... 40 0.20
gb|BJ476873.1|BJ476873 BJ476873 K. Sato unpublished cDNA li... 40 0.20
gb|BJ477207.1|BJ477207 BJ477207 K. Sato unpublished cDNA li... 40 0.20
gb|BQ460176.1|BQ460176 HA07A04r HA Hordeum vulgare subsp. v... 40 0.20
gb|BQ462711.1|BQ462711 HI01M11T HI Hordeum vulgare subsp. v... 40 0.20
gb|BQ462869.1|BQ462869 HI02E08r HI Hordeum vulgare subsp. v... 40 0.20
gb|BQ470298.1|BQ470298 HX02H09r HX Hordeum vulgare subsp. v... 40 0.20
gb|BQ470626.1|BQ470626 HX03I17r HX Hordeum vulgare subsp. v... 40 0.20
gb|BQ470969.1|BQ470969 HX04J09r HX Hordeum vulgare subsp. v... 40 0.20
gb|BM097820.2|BM097820 EBem04_SQ002_M18_R embryo, 12 DPA, n... 40 0.20
gb|BM377729.2|BM377729 EBem04_SQ003_P14_R embryo, 12 DPA, n... 40 0.20
gb|BM097390.2|BM097390 EBem07_SQ001_N23_R embryo, 28 DPA, n... 40 0.20
gb|BM369257.2|BM369257 EBem07_SQ003_B01_R embryo, 28 DPA, n... 40 0.20
gb|BM098680.2|BM098680 EBem08_SQ003_M08_R embryo, 40 DPA, n... 40 0.20
gb|BI780997.2|BI780997 EBma03_SQ001_B18_R maternal, 8 DPA, ... 40 0.20
gb|BQ768681.1|BQ768681 EBro08_SQ012_K07_R root, 3 week, dro... 40 0.20
gb|BU978050.1|BU978050 HA12H20r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU983003.1|BU983003 HA28E03r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU983431.1|BU983431 HA29L10r HA Hordeum vulgare subsp. v... 40 0.20
gb|BU994426.1|BU994426 HM07A13r HM Hordeum vulgare subsp. v... 40 0.20
gb|BU995103.1|BU995103 HM09D12r HM Hordeum vulgare subsp. v... 40 0.20
gb|BU995964.1|BU995964 HM11O21r HM Hordeum vulgare subsp. v... 40 0.20
gb|CA003662.1|CA003662 HS15C24r HS Hordeum vulgare subsp. v... 40 0.20
gb|CA019897.1|CA019897 HV13K09r HV Hordeum vulgare subsp. v... 40 0.20
gb|CA021596.1|CA021596 HZ40I20r HZ Hordeum vulgare subsp. v... 40 0.20
gb|CA031845.1|CA031845 HX11E18r HX Hordeum vulgare subsp. v... 40 0.20
gb|CA032528.1|CA032528 HX13E23r HX Hordeum vulgare subsp. v... 40 0.20
gb|CV053822.1|CV053822 BNEL103e9 Barley EST endosperm libra... 40 0.20
gb|CK122552.1|CK122552 BES1824103p03 BES1824 Hordeum vulgar... 40 0.20
gb|CK122594.1|CK122594 BES1824104k09 BES1824 Hordeum vulgar... 40 0.20
gb|CK122718.1|CK122718 BES1824105j01 BES1824 Hordeum vulgar... 40 0.20
gb|AH014393.1|SEG_AY643842S Hordeum vulgare subsp. vulgare ... 40 0.20
gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clo... 40 0.20
>gb|BF625661.2|BF625661 HVSMEa0013C18f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0013C18f, mRNA sequence
Length = 518
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 364 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 305
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 304 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 246
>gb|BF624099.3|BF624099 HVSMEa0009I02f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0009I02f, mRNA sequence
Length = 790
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 374 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 315
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 314 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 256
>gb|BF631617.2|BF631617 HVSMEb0016K07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0016K07f, mRNA sequence
Length = 809
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 376 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 317
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 316 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 258
>gb|BF256372.2|BF256372 HVSMEf0009G12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0009G12f, mRNA sequence
Length = 777
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 376 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 317
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 316 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 258
>gb|BE213788.1|BE213788 HV_CEb0001E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001E12f, mRNA sequence
Length = 959
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 394 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 335
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 334 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 276
>gb|BF264795.1|BF264795 HV_CEa0010G08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0010G08f, mRNA sequence
Length = 887
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 375 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 316
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 315 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 257
>gb|BE216623.2|BE216623 HV_CEb0010P19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010P19f, mRNA sequence
Length = 910
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 362 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 303
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 302 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 244
>gb|BG365693.2|BG365693 HVSMEi0003M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003M06f, mRNA sequence
Length = 744
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 366 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 307
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 306 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 248
>gb|BE558276.2|BE558276 HV_CEb0017A19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017A19f, mRNA sequence
Length = 706
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 388 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 329
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 328 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 270
>gb|AV925389.1|AV925389 AV925389 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22p21 5', mRNA sequence
Length = 601
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 367 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 308
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 307 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 249
>gb|BQ467976.1|BQ467976 HR01I12r HR Hordeum vulgare subsp. vulgare cDNA clone HR01I12
5-PRIME, mRNA sequence
Length = 563
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 370 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 311
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 310 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 252
>gb|BQ471145.1|BQ471145 HV01D01T HV Hordeum vulgare subsp. vulgare cDNA clone HV01D01
5-PRIME, mRNA sequence
Length = 534
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 363 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 304
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 303 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 245
>gb|BQ471792.1|BQ471792 HV03H22r HV Hordeum vulgare subsp. vulgare cDNA clone HV03H22
5-PRIME, mRNA sequence
Length = 517
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 204 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 145
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 144 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 86
>gb|CA008921.1|CA008921 HU12I16r HU Hordeum vulgare subsp. vulgare cDNA clone HU12I16
5-PRIME, mRNA sequence
Length = 556
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 339 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 280
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 279 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 221
>gb|CA019917.1|CA019917 HV13L09r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L09
5-PRIME, mRNA sequence
Length = 554
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 374 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 315
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 314 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 256
>gb|CA025023.1|CA025023 HZ51A03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51A03
5-PRIME, mRNA sequence
Length = 674
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 361 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 302
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 301 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 243
>gb|CB882606.1|CB882606 HL02F15w HL Hordeum vulgare subsp. vulgare cDNA clone HL02F15
3-PRIME, mRNA sequence
Length = 557
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 372 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 313
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 312 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 254
>gb|BI952890.1|BI952890 HVSMEm0008D15f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0008D15f, mRNA sequence
Length = 884
Score = 91.7 bits (46), Expect = 6e-017
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 364 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 305
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaac 1152
|| ||||| || | ||||||||| ||||||||| || |||||||| ||||||
Sbjct: 304 ccggcgtcggcggcggcgttgtgctggtcgatgtagcggaggttgtcccggaac 251
>gb|BE213833.1|BE213833 HV_CEb0001G10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001G10f, mRNA sequence
Length = 895
Score = 85.7 bits (43), Expect = 4e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 328 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 269
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| | | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 268 ccggcgtcgacggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 210
>gb|BI959700.1|BI959700 HVSMEn0020N17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N17f, mRNA sequence
Length = 655
Score = 79.8 bits (40), Expect = 2e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||||| ||||||||||||||||| | |||||| |||||| |||| ||||| |
Sbjct: 559 gcagtcgatgagctcctgctccgacagcgccgtcaggttgcccgtcacgatggcgttgat 500
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||| ||||||||
Sbjct: 499 cccctccaccgccgccaccgtcgagaaggcccagca 464
>gb|BJ464204.1|BJ464204 BJ464204 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f02 5', mRNA sequence
Length = 615
Score = 79.8 bits (40), Expect = 2e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||||| ||||||||||||||||| | |||||| |||||| |||| ||||| |
Sbjct: 448 gcagtcgatgagctcctgctccgacagcgccgtcaggttgcccgtcacgatggcgttgat 389
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||| ||||||||
Sbjct: 388 cccctccaccgccgccaccgtcgagaaggcccagca 353
>gb|BF256657.2|BF256657 HVSMEf0010J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J23f, mRNA sequence
Length = 861
Score = 73.8 bits (37), Expect = 1e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 788 cgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttca 847
|||||||||||| ||| |||| |||||||| | |||||| |||||| |||| ||||| |
Sbjct: 559 cgcagtcgatgagctcatgcttcgacagcgccgtcaggttgcccgtcacgatggcgttga 500
Query: 848 ccccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | ||||||||||| |||||| ||||||||
Sbjct: 499 tcccctccacggccgccaccgtcgagaaggcccagca 463
>gb|BF267713.2|BF267713 HV_CEa0018K22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018K22f, mRNA sequence
Length = 515
Score = 69.9 bits (35), Expect = 2e-010
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||| || |||||||||| ||||| |
Sbjct: 376 cggtactcctcgttggtgaggtcggcgaagcggttgagtcctaggcggaaggagtggacc 317
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| || | ||||||||| ||| ||||| || |||||||| |||||| ||||
Sbjct: 316 ccggcgtcggcggcggcgttgtgctggtccatgtaacggaggttgtcccggaacgcctc 258
>gb|BQ471140.1|BQ471140 HV01B20T HV Hordeum vulgare subsp. vulgare cDNA clone HV01B20
5-PRIME, mRNA sequence
Length = 542
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 488 gtcgcagtcgatgagctcctgctccgacagcgacaccag 450
>gb|BQ471157.1|BQ471157 HV01F03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01F03
5-PRIME, mRNA sequence
Length = 584
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 gtcgcagtcgatgagctcctgctccgacagcgacaccag 257
>gb|BQ762725.1|BQ762725 EBro02_SQ004_J24 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_J24 5', mRNA sequence
Length = 689
Score = 69.9 bits (35), Expect = 2e-010
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | || || ||||||||| ||||||||||| | ||| ||| |||| |||
Sbjct: 636 gtcgcagtccacgagctgctgctccgagagcgacaccagctcaccggtcctgatcttgtt 577
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
|| |||||||||||||||||||||| |||||||||||
Sbjct: 576 catgccctcgatggccgccaccgccgcaaacgcccagca 538
>gb|CB884207.1|CB884207 HV11M07r HV Hordeum vulgare subsp. vulgare cDNA clone HV11M07
5-PRIME, mRNA sequence
Length = 520
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 gtcgcagtcgatgagctcctgctccgacagcgacaccag 349
>gb|AL504152.1|AL504152 AL504152 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04F17V 5', mRNA sequence
Length = 527
Score = 65.9 bits (33), Expect = 4e-009
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || ||||||| |||||||||| ||||| |
Sbjct: 109 cggtactcctcgttggtgaggtcggcgaagcggttgaggccnaggcggaaggagtggacc 50
Query: 1099 ccagcgtc 1106
|| |||||
Sbjct: 49 ccggcgtc 42
>emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cysteine endopeptidase EP-A
Length = 2752
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtc 834
||||||||| |||| |||||||||||||||||||||||| || ||||||
Sbjct: 1800 gtcgcagtccatgagctcctgctccgacagcgacaccagcttccccgtc 1752
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 408 ccacgagttcttcacgatccagta 431
||||||||||||||||||||||||
Sbjct: 2361 ccacgagttcttcacgatccagta 2338
>emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cysteine endopeptidase EP-A
Length = 1299
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtc 834
||||||||| |||| |||||||||||||||||||||||| || ||||||
Sbjct: 606 gtcgcagtccatgagctcctgctccgacagcgacaccagcttccccgtc 558
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 408 ccacgagttcttcacgatccagta 431
||||||||||||||||||||||||
Sbjct: 984 ccacgagttcttcacgatccagta 961
>gb|BJ470509.1|BJ470509 BJ470509 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22p15 5', mRNA sequence
Length = 318
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1053 ggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtgga 1096
|||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 62 ggtgaggtcggcgaagcggttgaggccgaggcggaaggagtgga 19
>gb|BJ470713.1|BJ470713 BJ470713 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26c09 5', mRNA sequence
Length = 618
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaagg 1090
||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 88 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaagg 37
>gb|BM097386.2|BM097386 EBro01_SQ004_P20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_P20 5', mRNA sequence
Length = 615
Score = 61.9 bits (31), Expect = 6e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | || || ||||||||| ||||||||||| | ||| ||| ||| |||
Sbjct: 612 gtcgcagtccacgagctgctgctccgagagcgacaccagctcaccggtcttgattttgtt 553
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
|| |||||||||||||||||||||| |||||||||||
Sbjct: 552 catgccctcgatggccgccaccgccgcaaacgcccagca 514
>gb|BI956727.1|BI956727 HVSMEn0005A04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005A04f, mRNA sequence
Length = 799
Score = 58.0 bits (29), Expect = 9e-007
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
|||||| |||| ||||||||||||||| | | |||||| |||||| |||| ||||| |
Sbjct: 569 gcagtcnatgagctcctgctccgacagggccgtcaggttgcccgtcacgatggcgttgat 510
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||| | |||||| ||||||||
Sbjct: 509 cccctccaccgccgccactgtcgagaaggcccagca 474
>gb|BQ767647.1|BQ767647 EBro08_SQ009_P12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_P12 5', mRNA sequence
Length = 411
Score = 56.0 bits (28), Expect = 3e-006
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | || || ||||||||| ||||||||||| | || ||| |||| |||
Sbjct: 295 gtcgcagtccacgagctgctgctccgagagcgacaccagctcgccggtcctgatcttgtt 236
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| || |||||||||||||| |||| |||||||||||||
Sbjct: 235 catgccttcgatggccgccacggccgcgaacgcccagcac 196
>gb|BF258102.2|BF258102 HVSMEf0014M15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0014M15f, mRNA sequence
Length = 570
Score = 54.0 bits (27), Expect = 1e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| ||| |||||||| | ||| ||||||| |||||||||| ||||| |
Sbjct: 372 cggtactcctcgttggtaaggtcggcaagcgggttgaggcccaggcggaaggagtggacc 313
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtcgcggaacacctc 1157
|| ||||| | | ||||||||| ||||||||| || |||||||| |||||| ||||
Sbjct: 312 ccggcgtcgccggcggcgttgtgctggtcgatgtagcggaggttgtcccggaacgcctc 254
>gb|BE216298.2|BE216298 HV_CEb0010C01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010C01f, mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 859 gccgccaccgccgagaacgcccagcacccaccgca 893
|||||||||||||||||||||||||| | ||||||
Sbjct: 563 gccgccaccgccgagaacgcccagcagcaaccgca 529
>emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine proteinase
Length = 5593
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 859 gccgccaccgccgagaacgcccagca 884
||||||||||||||||||||||||||
Sbjct: 4359 gccgccaccgccgagaacgcccagca 4334
Score = 42.1 bits (21), Expect = 0.051
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccag 824
|||||||||||||||||||||
Sbjct: 4414 ctgctccgacagcgacaccag 4394
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 408 ccacgagttcttcacgatccagta 431
|||||||||||||| |||||||||
Sbjct: 4810 ccacgagttcttcatgatccagta 4787
>gb|BG343507.1|BG343507 HVSMEg0005P07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005P07f, mRNA sequence
Length = 938
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcg 817
||||||||||| |||||||||||||||||
Sbjct: 329 gcagtcgatgagctcctgctccgacagcg 301
>gb|BI960036.1|BI960036 HVSMEn0022P09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022P09f, mRNA sequence
Length = 646
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcg 817
||||||||||| |||||||||||||||||
Sbjct: 581 gcagtcgatgagctcctgctccgacagcg 553
>gb|AJ461406.1|AJ461406 AJ461406 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200033G07F1, mRNA sequence
Length = 240
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgca 341
||||||||||| |||||||||||||||||
Sbjct: 150 gggtaggacgcctccatggcgatgccgca 122
>gb|AJ461407.1|AJ461407 AJ461407 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200033G07F2, mRNA sequence
Length = 240
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgca 341
||||||||||| |||||||||||||||||
Sbjct: 136 gggtaggacgcctccatggcgatgccgca 108
>gb|BQ664085.1|BQ664085 HV01L06w HV Hordeum vulgare subsp. vulgare cDNA clone HV01L06
3-PRIME, mRNA sequence
Length = 610
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 313 gggtaggacgcgtccatggcgatgccgca 341
||||||||||| |||||||||||||||||
Sbjct: 279 gggtaggacgcctccatggcgatgccgca 307
>gb|BQ763183.1|BQ763183 EBro02_SQ007_A15_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_A15 5', mRNA sequence
Length = 618
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||| |||||||| | || ||| |||| ||||| ||||||||||||||
Sbjct: 579 ctgctccgacagagacaccagttcgccggtcctgatcttgttcatgccctcgatggccgc 520
Query: 864 caccgccgagaacgcccagca 884
||| |||| ||| ||||||||
Sbjct: 519 cacggccgcgaatgcccagca 499
>gb|CB884204.1|CB884204 HV10K10u HV Hordeum vulgare subsp. vulgare cDNA clone HV10K10
3-PRIME, mRNA sequence
Length = 399
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 313 gggtaggacgcgtccatggcgatgccgca 341
||||||||||| |||||||||||||||||
Sbjct: 276 gggtaggacgcctccatggcgatgccgca 304
>gb|CB884208.1|CB884208 HV11M07u HV Hordeum vulgare subsp. vulgare cDNA clone HV11M07
3-PRIME, mRNA sequence
Length = 486
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 313 gggtaggacgcgtccatggcgatgccgca 341
||||||||||| |||||||||||||||||
Sbjct: 296 gggtaggacgcctccatggcgatgccgca 324
>emb|A98645.1| Sequence 1 from Patent WO9910500
Length = 1286
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 853 tcgatggccgccaccgccgagaacgcccagcac 885
||||| ||||||||||||| |||||||||||||
Sbjct: 545 tcgatcgccgccaccgccgcgaacgcccagcac 513
>gb|AV915782.1|AV915782 AV915782 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p21 5', mRNA sequence
Length = 567
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 790 cagtcgatgatctcctgctccgacagcg 817
|||||||||| |||||||||||||||||
Sbjct: 41 cagtcgatgagctcctgctccgacagcg 14
>gb|BQ471297.1|BQ471297 HV02B01r HV Hordeum vulgare subsp. vulgare cDNA clone HV02B01
5-PRIME, mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacac 821
|||||||||||||| |||||||||||| || |||||
Sbjct: 202 gtcgcagtcgatgagctcctgctccgagagggacac 167
>gb|BQ472128.1|BQ472128 HV04H20r HV Hordeum vulgare subsp. vulgare cDNA clone HV04H20
5-PRIME, mRNA sequence
Length = 501
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacac 821
|||||||||||||| |||||||||||| || |||||
Sbjct: 188 gtcgcagtcgatgagctcctgctccgagagggacac 153
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 294,351
Number of Sequences: 312970
Number of extensions: 294351
Number of successful extensions: 100790
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100205
Number of HSP's gapped (non-prelim): 556
length of query: 1467
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1448
effective length of database: 169,188,109
effective search space: 244984381832
effective search space used: 244984381832
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)