BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829517.2.1
(913 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503798.1|AL503798 AL503798 Hordeum vulgare Barke roots... 313 6e-084
gb|AL504653.1|AL504653 AL504653 Hordeum vulgare Barke roots... 313 6e-084
gb|BQ466319.1|BQ466319 HT02D06r HT Hordeum vulgare subsp. v... 313 6e-084
gb|CA015021.1|CA015021 HT13A16r HT Hordeum vulgare subsp. v... 313 6e-084
gb|BE214454.2|BE214454 HV_CEb0003I03f Hordeum vulgare seedl... 289 8e-077
gb|BF624084.3|BF624084 HVSMEa0009E20f Hordeum vulgare seedl... 283 5e-075
gb|BE558888.2|BE558888 HV_CEb0020K23f Hordeum vulgare seedl... 283 5e-075
gb|BE558314.3|BE558314 HV_CEb0017D03f Hordeum vulgare seedl... 274 5e-072
gb|CA002182.1|CA002182 HS06M06r HS Hordeum vulgare subsp. v... 266 1e-069
gb|CA009432.1|CA009432 HU14B18r HU Hordeum vulgare subsp. v... 266 1e-069
gb|BE215769.2|BE215769 HV_CEb0008H02f Hordeum vulgare seedl... 262 2e-068
gb|CA003108.1|CA003108 HS09G23r HS Hordeum vulgare subsp. v... 262 2e-068
gb|BU984621.1|BU984621 HF04H12r HF Hordeum vulgare subsp. v... 240 7e-062
gb|BU985985.1|BU985985 HF09E04r HF Hordeum vulgare subsp. v... 240 7e-062
gb|CA003015.1|CA003015 HS09C16r HS Hordeum vulgare subsp. v... 230 6e-059
gb|BF253552.2|BF253552 HVSMEf0001D24f Hordeum vulgare seedl... 228 3e-058
gb|CA028826.1|CA028826 HZ63F21r HZ Hordeum vulgare subsp. v... 216 1e-054
gb|BJ544512.1|BJ544512 BJ544512 K. Sato unpublished cDNA li... 216 1e-054
gb|BU988530.1|BU988530 HF17O12r HF Hordeum vulgare subsp. v... 210 6e-053
gb|BF255119.2|BF255119 HVSMEf0006A03f Hordeum vulgare seedl... 206 9e-052
gb|BU989028.1|BU989028 HF19I13r HF Hordeum vulgare subsp. v... 204 4e-051
gb|CA018640.1|CA018640 HV09D16r HV Hordeum vulgare subsp. v... 204 4e-051
gb|BJ549486.1|BJ549486 BJ549486 K. Sato unpublished cDNA li... 186 9e-046
gb|BM370565.2|BM370565 EBro08_SQ004_J19_R root, 3 week, dro... 184 3e-045
gb|BJ544996.1|BJ544996 BJ544996 K. Sato unpublished cDNA li... 174 3e-042
gb|BJ545973.1|BJ545973 BJ545973 K. Sato unpublished cDNA li... 165 3e-039
gb|BJ550139.1|BJ550139 BJ550139 K. Sato unpublished cDNA li... 165 3e-039
gb|BI947528.1|BI947528 HVSMEl0005M13f Hordeum vulgare spike... 155 3e-036
gb|BE455419.2|BE455419 HVSMEg0017A13f Hordeum vulgare pre-a... 115 3e-024
gb|AJ462436.1|AJ462436 AJ462436 S00002 Hordeum vulgare subs... 109 2e-022
gb|CA016359.1|CA016359 HV09D16u HV Hordeum vulgare subsp. v... 105 3e-021
gb|BU967702.1|BU967702 HB05C06r BC Hordeum vulgare subsp. v... 103 1e-020
gb|BQ658168.1|BQ658168 HA05H06u HA Hordeum vulgare subsp. v... 96 2e-018
gb|AJ462435.1|AJ462435 AJ462435 S00002 Hordeum vulgare subs... 92 4e-017
gb|AL501950.1|AL501950 AL501950 Hordeum vulgare Barke roots... 86 2e-015
gb|BU990367.1|BU990367 HF24N04r HF Hordeum vulgare subsp. v... 86 2e-015
gb|BQ754649.1|BQ754649 EBed01_SQ003_G16_R endosperm, 6 DPA,... 80 1e-013
gb|CA000846.1|CA000846 HS06M06u HS Hordeum vulgare subsp. v... 80 1e-013
gb|BF629992.2|BF629992 HVSMEb0007J09f Hordeum vulgare seedl... 76 2e-012
gb|BF254477.2|BF254477 HVSMEf0004C05f Hordeum vulgare seedl... 76 2e-012
gb|BF258825.2|BF258825 HVSMEf0016M11f Hordeum vulgare seedl... 76 2e-012
gb|BE601932.2|BE601932 HVSMEh0100D18f Hordeum vulgare 5-45 ... 76 2e-012
gb|BG368555.1|BG368555 HVSMEi0019L09f Hordeum vulgare 20 DA... 76 2e-012
gb|BI949597.1|BI949597 HVSMEl0014N07f Hordeum vulgare spike... 76 2e-012
gb|BE214923.1|BE214923 HV_CEb0005D01f Hordeum vulgare seedl... 76 2e-012
gb|BG415780.1|BG415780 HVSMEk0007M14f Hordeum vulgare testa... 76 2e-012
gb|BQ471154.1|BQ471154 HV01D22T HV Hordeum vulgare subsp. v... 76 2e-012
gb|BQ753274.1|BQ753274 EBan01_SQ001_B08_R anther, yellow st... 76 2e-012
gb|CA014931.1|CA014931 HT12M06r HT Hordeum vulgare subsp. v... 76 2e-012
gb|CA032242.1|CA032242 HX12H05r HX Hordeum vulgare subsp. v... 76 2e-012
gb|BJ547013.1|BJ547013 BJ547013 K. Sato unpublished cDNA li... 76 2e-012
gb|BJ547046.1|BJ547046 BJ547046 K. Sato unpublished cDNA li... 76 2e-012
gb|BM928838.1|BM928838 LP10014 Lemma/palea-enriched cDNA li... 74 9e-012
gb|AL503620.1|AL503620 AL503620 Hordeum vulgare Barke roots... 72 4e-011
gb|BF256997.2|BF256997 HVSMEf0011J07f Hordeum vulgare seedl... 72 4e-011
gb|AL501218.1|AL501218 AL501218 Hordeum vulgare Barke roots... 66 2e-009
gb|BG415240.2|BG415240 HVSMEk0005K22f Hordeum vulgare testa... 66 2e-009
gb|AV917187.1|AV917187 AV917187 K. Sato unpublished cDNA li... 64 9e-009
gb|AV917494.1|AV917494 AV917494 K. Sato unpublished cDNA li... 64 9e-009
gb|AV919932.1|AV919932 AV919932 K. Sato unpublished cDNA li... 64 9e-009
gb|BQ465758.1|BQ465758 HU04J19r HU Hordeum vulgare subsp. v... 64 9e-009
gb|BQ657997.1|BQ657997 HA06C19u HA Hordeum vulgare subsp. v... 64 9e-009
gb|CA029926.1|CA029926 HX05J14r HX Hordeum vulgare subsp. v... 64 9e-009
gb|CB874547.1|CB874547 HX05J14w HX Hordeum vulgare subsp. v... 64 9e-009
gb|BQ764866.1|BQ764866 EBca01_SQ005_J02_R carpel, pre-anthe... 56 2e-006
gb|BI951613.1|BI951613 HVSMEm0001K07f Hordeum vulgare green... 52 3e-005
gb|AV912761.1|AV912761 AV912761 K. Sato unpublished cDNA li... 50 1e-004
gb|BF628758.3|BF628758 HVSMEb0007O03f Hordeum vulgare seedl... 44 0.008
gb|BJ457337.1|BJ457337 BJ457337 K. Sato unpublished cDNA li... 44 0.008
gb|CA028801.1|CA028801 HZ63E17r HZ Hordeum vulgare subsp. v... 44 0.008
gb|BI952427.1|BI952427 HVSMEm0006F23f Hordeum vulgare green... 38 0.49
gb|BI952888.1|BI952888 HVSMEm0008D11f Hordeum vulgare green... 38 0.49
gb|BF264373.2|BF264373 HV_CEa0009D24f Hordeum vulgare seedl... 38 0.49
gb|BJ449919.1|BJ449919 BJ449919 K. Sato unpublished cDNA li... 38 0.49
gb|CA002988.1|CA002988 HS09B09r HS Hordeum vulgare subsp. v... 38 0.49
gb|CA007626.1|CA007626 HU08I15r HU Hordeum vulgare subsp. v... 38 0.49
>gb|AL503798.1|AL503798 AL503798 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03H09T 5', mRNA sequence
Length = 700
Score = 313 bits (158), Expect = 6e-084
Identities = 412/497 (82%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 126 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 185
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 186 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 245
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 246 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 305
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 306 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 365
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 366 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 425
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 426 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 485
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 486 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 543
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 544 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 599
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 600 ttccttgcaccccagat 616
>gb|AL504653.1|AL504653 AL504653 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05P05V 5', mRNA sequence
Length = 700
Score = 313 bits (158), Expect = 6e-084
Identities = 412/497 (82%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 109 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 168
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 169 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 228
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 229 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 288
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 289 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 348
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 349 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 408
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 409 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 468
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 469 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 526
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 527 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 582
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 583 ttccttgcaccccagat 599
>gb|BQ466319.1|BQ466319 HT02D06r HT Hordeum vulgare subsp. vulgare cDNA clone HT02D06
5-PRIME, mRNA sequence
Length = 668
Score = 313 bits (158), Expect = 6e-084
Identities = 412/497 (82%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 107 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 166
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 167 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 226
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 227 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 286
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 287 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 346
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 347 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 406
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 407 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 466
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 467 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 524
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 525 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 580
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 581 ttccttgcaccccagat 597
>gb|CA015021.1|CA015021 HT13A16r HT Hordeum vulgare subsp. vulgare cDNA clone HT13A16
5-PRIME, mRNA sequence
Length = 635
Score = 313 bits (158), Expect = 6e-084
Identities = 412/497 (82%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 138 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 197
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 198 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 257
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 258 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 317
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 318 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 377
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 378 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 437
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 438 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 497
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 498 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 555
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 556 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 611
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 612 ttccttgcaccccagat 628
>gb|BE214454.2|BE214454 HV_CEb0003I03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003I03f, mRNA sequence
Length = 711
Score = 289 bits (146), Expect = 8e-077
Identities = 409/497 (82%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 54 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 113
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 114 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 173
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 174 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 233
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 234 gactcctacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 293
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 294 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 353
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 354 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 413
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 414 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 471
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 472 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 527
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 528 ttccttgcaccccagat 544
>gb|BF624084.3|BF624084 HVSMEa0009E20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009E20f, mRNA sequence
Length = 790
Score = 283 bits (143), Expect = 5e-075
Identities = 406/494 (82%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 121 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 180
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 181 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 240
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 241 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 300
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 301 gactcctacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 360
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 361 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 420
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 421 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 480
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 481 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 538
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 539 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 594
Query: 520 ttccttgcacccca 533
||||||||||||||
Sbjct: 595 ttccttgcacccca 608
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 614 cacaccctgcgtttgaagcagcgctccctggc 645
|||||||||| |||||||| |||||||||||
Sbjct: 690 cacaccctgcatttgaagcttcgctccctggc 721
>gb|BE558888.2|BE558888 HV_CEb0020K23f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020K23f, mRNA sequence
Length = 813
Score = 283 bits (143), Expect = 5e-075
Identities = 406/494 (82%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 88 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 147
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 148 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 207
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 208 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 267
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 268 gactcctacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 327
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 328 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 387
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 388 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 447
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 448 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 505
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 506 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 561
Query: 520 ttccttgcacccca 533
||||||||||||||
Sbjct: 562 ttccttgcacccca 575
>gb|BE558314.3|BE558314 HV_CEb0017D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017D03f, mRNA sequence
Length = 822
Score = 274 bits (138), Expect = 5e-072
Identities = 407/497 (81%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 53 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 112
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 113 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 172
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 173 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 232
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| | | |||||| | ||
Sbjct: 233 gactcctacgcaatagcattgtatttggaggacaagtaccctcaacgccctcttttgccc 292
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 293 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 352
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 353 caacctcttcacaatctcaccttggtgagattcattgaacaaaaggtcggaacaggggag 412
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 413 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 470
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 471 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 526
Query: 520 ttccttgcaccccagat 536
|||||||| ||||||||
Sbjct: 527 ttccttgccccccagat 543
>gb|CA002182.1|CA002182 HS06M06r HS Hordeum vulgare subsp. vulgare cDNA clone HS06M06
5-PRIME, mRNA sequence
Length = 601
Score = 266 bits (134), Expect = 1e-069
Identities = 305/362 (84%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 198 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 257
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 258 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 317
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 318 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 377
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 378 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 437
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 438 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 497
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 498 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 557
Query: 400 ag 401
||
Sbjct: 558 ag 559
>gb|CA009432.1|CA009432 HU14B18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14B18
5-PRIME, mRNA sequence
Length = 474
Score = 266 bits (134), Expect = 1e-069
Identities = 305/362 (84%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 111 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 170
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 171 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 230
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 231 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 290
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 291 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 350
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 351 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 410
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 411 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 470
Query: 400 ag 401
||
Sbjct: 471 ag 472
>gb|BE215769.2|BE215769 HV_CEb0008H02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008H02f, mRNA sequence
Length = 519
Score = 262 bits (132), Expect = 2e-068
Identities = 395/483 (81%), Gaps = 6/483 (1%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 43 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 102
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 103 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 162
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 163 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 222
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 223 gactcctacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 282
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 283 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 342
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 343 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 402
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| |||
Sbjct: 403 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga-- 460
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
| ||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 461 ----tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 516
Query: 520 ttc 522
|||
Sbjct: 517 ttc 519
>gb|CA003108.1|CA003108 HS09G23r HS Hordeum vulgare subsp. vulgare cDNA clone HS09G23
5-PRIME, mRNA sequence
Length = 413
Score = 262 bits (132), Expect = 2e-068
Identities = 303/360 (84%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 54 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 113
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 114 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 173
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 174 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 233
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 234 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 293
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 294 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 353
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 354 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 413
>gb|BU984621.1|BU984621 HF04H12r HF Hordeum vulgare subsp. vulgare cDNA clone HF04H12
5-PRIME, mRNA sequence
Length = 566
Score = 240 bits (121), Expect = 7e-062
Identities = 351/428 (82%), Gaps = 6/428 (1%)
Strand = Plus / Plus
Query: 109 gagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagctt 168
|||||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||||||
Sbjct: 13 gagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttcatgaagctt 72
Query: 169 aatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggtgactcttac 228
||||||||||||||||||||||| | ||| | ||| | ||||| ||||||||||||
Sbjct: 73 aatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggtgactcttac 132
Query: 229 gcgataacactgtatttggaggacaagtacccagagcctcctcttctacctcaagacctt 288
|| ||| || |||||||||||||||||||||| ||| |||||| | || |||||||||
Sbjct: 133 gcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccccaagacctt 192
Query: 289 caaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtattcaacctctc 348
||||||| || ||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct: 193 gaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtattcaacctctt 252
Query: 349 cataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttg 408
|| || ||||| || |||| |||||||| || ||||| || |||||||||| | |
Sbjct: 253 cacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggagagcctcccg 312
Query: 409 tggactcaacaacaaatcgagagaggtttcacagctattgagaacctgatacaactaaaa 468
||| |||||||| || || ||||||||||||||| |||||||| ||| | |||
Sbjct: 313 tgggtccaacaacagattgatagaggtttcacagctgttgagaacatga------tcaaa 366
Query: 469 ggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgca 528
|| || || ||||||| ||| | ||||||||||||||||||||||| ||||||||||||
Sbjct: 367 ggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgtattccttgca 426
Query: 529 ccccagat 536
||||||||
Sbjct: 427 ccccagat 434
>gb|BU985985.1|BU985985 HF09E04r HF Hordeum vulgare subsp. vulgare cDNA clone HF09E04
5-PRIME, mRNA sequence
Length = 566
Score = 240 bits (121), Expect = 7e-062
Identities = 351/428 (82%), Gaps = 6/428 (1%)
Strand = Plus / Plus
Query: 109 gagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagctt 168
|||||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||||||
Sbjct: 13 gagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttcatgaagctt 72
Query: 169 aatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggtgactcttac 228
||||||||||||||||||||||| | ||| | ||| | ||||| ||||||||||||
Sbjct: 73 aatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggtgactcttac 132
Query: 229 gcgataacactgtatttggaggacaagtacccagagcctcctcttctacctcaagacctt 288
|| ||| || |||||||||||||||||||||| ||| |||||| | || |||||||||
Sbjct: 133 gcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccccaagacctt 192
Query: 289 caaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtattcaacctctc 348
||||||| || ||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct: 193 gaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtattcaacctctt 252
Query: 349 cataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttg 408
|| || ||||| || |||| |||||||| || ||||| || |||||||||| | |
Sbjct: 253 cacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggagagcctcccg 312
Query: 409 tggactcaacaacaaatcgagagaggtttcacagctattgagaacctgatacaactaaaa 468
||| |||||||| || || ||||||||||||||| |||||||| ||| | |||
Sbjct: 313 tgggtccaacaacagattgatagaggtttcacagctgttgagaacatga------tcaaa 366
Query: 469 ggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgca 528
|| || || ||||||| ||| | ||||||||||||||||||||||| ||||||||||||
Sbjct: 367 ggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgtattccttgca 426
Query: 529 ccccagat 536
||||||||
Sbjct: 427 ccccagat 434
>gb|CA003015.1|CA003015 HS09C16r HS Hordeum vulgare subsp. vulgare cDNA clone HS09C16
5-PRIME, mRNA sequence
Length = 337
Score = 230 bits (116), Expect = 6e-059
Identities = 242/284 (85%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 54 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 113
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 114 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 173
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 174 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 233
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||||||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 234 gactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 293
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcat 323
||||||||| ||||||| || ||||| |||||| ||||||||
Sbjct: 294 caagaccttgaaaagaaggccctgaatatccagatagcaagcat 337
>gb|BF253552.2|BF253552 HVSMEf0001D24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001D24f, mRNA sequence
Length = 558
Score = 228 bits (115), Expect = 3e-058
Identities = 289/347 (83%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 122 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 181
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 182 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 241
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | |||| ||
Sbjct: 242 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcaataatcggc 301
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||||||||| ||| |||||| | ||
Sbjct: 302 gactcctacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccc 361
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 362 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 421
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggt 386
|||||||| || || ||||| || |||| |||||||| || |||||
Sbjct: 422 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggt 468
>gb|CA028826.1|CA028826 HZ63F21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63F21
5-PRIME, mRNA sequence
Length = 365
Score = 216 bits (109), Expect = 1e-054
Identities = 193/221 (87%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||
Sbjct: 139 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggt 198
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 199 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 258
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| | ||| | ||||| |||
Sbjct: 259 atgaagcttaatcctatgaagttcgtccctgcctgggtcaacggcgacgcagtaatcggt 318
Query: 220 gactcttacgcgataacactgtatttggaggacaagtaccc 260
||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 319 gactcttacgcaatagcattgtatttggaggacaagtaccc 359
>gb|BJ544512.1|BJ544512 BJ544512 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30e08 5', mRNA sequence
Length = 503
Score = 216 bits (109), Expect = 1e-054
Identities = 343/420 (81%), Gaps = 7/420 (1%)
Strand = Plus / Plus
Query: 117 ggcggtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagcttaatcctat 176
|||||| ||||| |||| |||||||||||||||||| || ||| | ||||||||||||||
Sbjct: 2 ggcggtcaacctcctca-gggcgagcagtctgatcccgagttcatgaagcttaatcctat 60
Query: 177 gaagttcgtccctgcgttggttgatggcagttctgtaataggtgactcttacgcgataac 236
||||||||||||||| | ||| || ||| | ||||| |||||||||||||| ||| |
Sbjct: 61 gaagttcgtccctgcctgggtcgacggcgacgcagtaatcggtgactcttacgcaatagc 120
Query: 237 actgtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaa 296
| |||||||||||||||||||||| ||| |||||| | || ||||||||| |||||||
Sbjct: 121 attgtatttggaggacaagtaccctcagcgccctcttttgccccaagaccttgaaaagaa 180
Query: 297 agctttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacct 356
|| ||||| |||||| ||||||||||| |||||||||||||||||| || || ||
Sbjct: 181 ggccctgaatatccagatagcaagcattgtgtgttctggtattcaacctcttcacaatct 240
Query: 357 cacagtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactca 416
||| || |||| |||||||| || ||||| || |||||||||| | |||| ||
Sbjct: 241 caccttggtgagattcattgagcaaaaggtcggaacaggggagagcctcccgtgggtcca 300
Query: 417 acaacaaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgc 476
|||||| || || ||||||||||||||| |||||||| ||| | ||||| || ||
Sbjct: 301 acaacagattgatagaggtttcacagctgttgagaacatga------tcaaaggctgtgc 354
Query: 477 cgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 tgggaagtttgctatgggagatgaagtccaactggcagacgtattccttgcaccccagat 414
>gb|BU988530.1|BU988530 HF17O12r HF Hordeum vulgare subsp. vulgare cDNA clone HF17O12
5-PRIME, mRNA sequence
Length = 497
Score = 210 bits (106), Expect = 6e-053
Identities = 330/405 (81%), Gaps = 6/405 (1%)
Strand = Plus / Plus
Query: 132 caagggcgagcagtctgatccagaattcgtcaagcttaatcctatgaagttcgtccctgc 191
||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||
Sbjct: 1 caagggcgagcagtctgatcccgagttcatgaagcttaatcctatgaagttcgtccctgc 60
Query: 192 gttggttgatggcagttctgtaataggtgactcttacgcgataacactgtatttggagga 251
| ||| | ||| | ||||| |||||||||||||| ||| || |||||||||||||
Sbjct: 61 ctgggtcaacggcgacgcagtaatcggtgactcttacgcaatagcattgtatttggagga 120
Query: 252 caagtacccagagcctcctcttctacctcaagaccttcaaaagaaagctttgaatcacca 311
||||||||| ||| |||||| | || ||||||||| ||||||| || ||||| |||
Sbjct: 121 caagtaccctcagcgccctcttttgccccaagaccttgaaaagaaggccctgaatatcca 180
Query: 312 gattgcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgaggtt 371
||| ||||||||||| |||||||||||||||||| || || ||||| || |||| ||
Sbjct: 181 gatagcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgagatt 240
Query: 372 cattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagag 431
|||||| || ||||| || |||||||||| | |||| |||||||| || || ||
Sbjct: 241 cattgagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattgatag 300
Query: 432 aggtttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgcaac 491
||||||||||||| |||||||| ||| | ||||| || || ||||||| ||| |
Sbjct: 301 aggtttcacagctgttgagaacatga------tcaaaggctgtgctgggaagtttgctat 354
Query: 492 aggagatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 gggagatgaagtccaactggcagacgtattccttgcaccccagat 399
>gb|BF255119.2|BF255119 HVSMEf0006A03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006A03f, mRNA sequence
Length = 604
Score = 206 bits (104), Expect = 9e-052
Identities = 257/308 (83%)
Strand = Plus / Plus
Query: 40 tactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggt 99
|||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 79 tactcgtactggcgcagctcctgctcccaccgcgtccgcatcgcgctcaacctcaaaggc 138
Query: 100 gtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaattc 159
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct: 139 atcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagttc 198
Query: 160 gtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggt 219
| ||||||||||||||||||||||||||||| | ||| || || | ||||| ||
Sbjct: 199 atgaagcttaatcctatgaagttcgtccctgcctgggtcgacggggacgcagtaatcggc 258
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || |||||||||||||||| ||||| ||| |||||| | ||
Sbjct: 259 gactcctacgcaatagcattgtatttggaggacaattaccctcagcgccctcttttgccc 318
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| |||||||||| ||||| ||||
Sbjct: 319 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgagtgttctgatatt 378
Query: 340 caacctct 347
||||||||
Sbjct: 379 caacctct 386
Score = 71.9 bits (36), Expect = 4e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 493 ggagatgaagtccaactggcagatgtattccttgcaccccagat 536
|||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 525 ggagatgaagtccacctggcagacgtattccttgcaccccagat 568
>gb|BU989028.1|BU989028 HF19I13r HF Hordeum vulgare subsp. vulgare cDNA clone HF19I13
5-PRIME, mRNA sequence
Length = 495
Score = 204 bits (103), Expect = 4e-051
Identities = 327/402 (81%), Gaps = 6/402 (1%)
Strand = Plus / Plus
Query: 135 gggcgagcagtctgatccagaattcgtcaagcttaatcctatgaagttcgtccctgcgtt 194
|||||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |
Sbjct: 1 gggcgagcagtctgatcccgagttcatgaagcttaatcctatgaagttcgtccctgcctg 60
Query: 195 ggttgatggcagttctgtaataggtgactcttacgcgataacactgtatttggaggacaa 254
||| | ||| | ||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct: 61 ggtcaacggcgacgcagtaatcggtgactcttacgcaatagcattgtatttggaggacaa 120
Query: 255 gtacccagagcctcctcttctacctcaagaccttcaaaagaaagctttgaatcaccagat 314
|||||| ||| |||||| | || ||||||||| ||||||| || ||||| ||||||
Sbjct: 121 gtaccctcagcgccctcttttgccccaagaccttgaaaagaaggccctgaatatccagat 180
Query: 315 tgcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgaggttcat 374
||||||||||| |||||||||||||||||| || || ||||| || |||| |||||
Sbjct: 181 agcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgagattcat 240
Query: 375 tgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagagagg 434
||| || ||||| || |||||||||| | |||| |||||||| || || |||||
Sbjct: 241 tgagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattgatagagg 300
Query: 435 tttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgcaacagg 494
|||||||||| |||||||| ||| | ||||| || || ||||||| ||| | ||
Sbjct: 301 tttcacagctgttgagaacatga------tcaaaggctgtgctgggaagtttgctatggg 354
Query: 495 agatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 agatgaagtccaactggcagacgtattccttgcaccccagat 396
>gb|CA018640.1|CA018640 HV09D16r HV Hordeum vulgare subsp. vulgare cDNA clone HV09D16
5-PRIME, mRNA sequence
Length = 570
Score = 204 bits (103), Expect = 4e-051
Identities = 327/402 (81%), Gaps = 6/402 (1%)
Strand = Plus / Plus
Query: 135 gggcgagcagtctgatccagaattcgtcaagcttaatcctatgaagttcgtccctgcgtt 194
|||||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |
Sbjct: 1 gggcgagcagtctgatcccgagttcatgaagcttaatcctatgaagttcgtccctgcctg 60
Query: 195 ggttgatggcagttctgtaataggtgactcttacgcgataacactgtatttggaggacaa 254
||| | ||| | ||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct: 61 ggtcaacggcgacgcagtaatcggtgactcttacgcaatagcattgtatttggaggacaa 120
Query: 255 gtacccagagcctcctcttctacctcaagaccttcaaaagaaagctttgaatcaccagat 314
|||||| ||| |||||| | || ||||||||| ||||||| || ||||| ||||||
Sbjct: 121 gtaccctcagcgccctcttttgccccaagaccttgaaaagaaggccctgaatatccagat 180
Query: 315 tgcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgaggttcat 374
||||||||||| |||||||||||||||||| || || ||||| || |||| |||||
Sbjct: 181 agcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgagattcat 240
Query: 375 tgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagagagg 434
||| || ||||| || |||||||||| | |||| |||||||| || || |||||
Sbjct: 241 tgagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattgatagagg 300
Query: 435 tttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgcaacagg 494
|||||||||| |||||||| ||| | ||||| || || ||||||| ||| | ||
Sbjct: 301 tttcacagctgttgagaacatga------tcaaaggctgtgctgggaagtttgctatggg 354
Query: 495 agatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 agatgaagtccaactggcagacgtattccttgcaccccagat 396
>gb|BJ549486.1|BJ549486 BJ549486 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m16 5', mRNA sequence
Length = 686
Score = 186 bits (94), Expect = 9e-046
Identities = 318/393 (80%), Gaps = 6/393 (1%)
Strand = Plus / Plus
Query: 144 gtctgatccagaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatgg 203
||||||||| || ||| | ||||||||||||||||||||||||||||| | ||| | ||
Sbjct: 22 gtctgatcccgagttcatgaagcttaatcctatgaagttcgtccctgcctgggtcaacgg 81
Query: 204 cagttctgtaataggtgactcttacgcgataacactgtatttggaggacaagtacccaga 263
| | ||||| |||||||||||||| ||| || |||||||||||||||||||||| |
Sbjct: 82 cgacgcagtaatcggtgactcttacgcaatagcattgtatttggaggacaagtaccctca 141
Query: 264 gcctcctcttctacctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcat 323
|| |||||| | || ||||||||| ||||||| || ||||| |||||| ||||||||
Sbjct: 142 gcgccctcttttgccccaagaccttgaaaagaaggccctgaatatccagatagcaagcat 201
Query: 324 tgtagcttctggtattcaacctctccataacctcacagtgttgaggttcattgaccagaa 383
||| |||||||||||||||||| || || ||||| || |||| |||||||| || ||
Sbjct: 202 tgtgtgttctggtattcaacctcttcacaatctcaccttggtgagattcattgagcaaaa 261
Query: 384 ggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagc 443
||| || |||||||||| | |||| |||||||| || || ||||||||||||||
Sbjct: 262 ggtcggaacaggggagagcctcccgtgggtccaacaacagattgatagaggtttcacagc 321
Query: 444 tattgagaacctgatacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagt 503
| |||||||| ||| | ||||| || || ||||||| ||| | |||||||||||
Sbjct: 322 tgttgagaacatga------tcaaaggctgtgctgggaagtttgctatgggagatgaagt 375
Query: 504 ccaactggcagatgtattccttgcaccccagat 536
|||||||||||| ||||||||||||||||||||
Sbjct: 376 ccaactggcagacgtattccttgcaccccagat 408
>gb|BM370565.2|BM370565 EBro08_SQ004_J19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_J19 5', mRNA sequence
Length = 679
Score = 184 bits (93), Expect = 3e-045
Identities = 302/372 (81%), Gaps = 6/372 (1%)
Strand = Plus / Plus
Query: 165 gcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggtgactc 224
||||||||||||||||||||||||||| | ||| || ||| | ||||| ||||||||
Sbjct: 1 gcttaatcctatgaagttcgtccctgcctgggtcgacggcgacgcagtaatcggtgactc 60
Query: 225 ttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacctcaaga 284
|||||| ||| || |||||||||||||||||||||| ||| |||||| | || |||||
Sbjct: 61 ttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgccccaaga 120
Query: 285 ccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtattcaacc 344
|||| ||||||| || ||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 121 ccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtattcaacc 180
Query: 345 tctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggagagtgt 404
||| || || ||||| || |||| |||||||| || ||||| || |||||||||| |
Sbjct: 181 tcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggagagcct 240
Query: 405 gttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgatacaact 464
|||| |||||||| || || ||||||||||||||| |||||||| ||| |
Sbjct: 241 cccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatga------t 294
Query: 465 aaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgtattcct 524
||||| || || ||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 295 caaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgtattcct 354
Query: 525 tgcaccccagat 536
||||||||||||
Sbjct: 355 tgcaccccagat 366
>gb|BJ544996.1|BJ544996 BJ544996 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41o12 5', mRNA sequence
Length = 297
Score = 174 bits (88), Expect = 3e-042
Identities = 230/276 (83%), Gaps = 1/276 (0%)
Strand = Plus / Plus
Query: 103 gattacgagtacaagg-cggtgaaccttctcaagggcgagcagtctgatccagaattcgt 161
||||| |||||||||| ||| ||||| ||||||||||||||||||||||| || ||| |
Sbjct: 19 gattatgagtacaaggtcggacaacctcctcaagggcgagcagtctgatcccgagttcat 78
Query: 162 caagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaataggtga 221
||||||||||||||||||||||||||||| | ||| || ||| | ||||| |||||
Sbjct: 79 gaagcttaatcctatgaagttcgtccctgcctgggtcgacggcgacgcagtaatcggtga 138
Query: 222 ctcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacctca 281
||||||||| ||| || |||||||||||||||||||||| ||| |||||| | || ||
Sbjct: 139 ctcttacgcaatagcattgtatttggaggacaagtaccctcagcgccctcttttgcccca 198
Query: 282 agaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtattca 341
||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||||
Sbjct: 199 agaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtattca 258
Query: 342 acctctccataacctcacagtgttgaggttcattga 377
|||||| || || ||||| || |||| ||||||||
Sbjct: 259 acctcttcacaatctcaccttggtgagattcattga 294
>gb|BJ545973.1|BJ545973 BJ545973 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30e08 3', mRNA sequence
Length = 586
Score = 165 bits (83), Expect = 3e-039
Identities = 265/326 (81%), Gaps = 6/326 (1%)
Strand = Plus / Minus
Query: 211 gtaataggtgactcttacgcgataacactgtatttggaggacaagtacccagagcctcct 270
||||| |||||||||||||| ||| || |||||||||||||||||||||| ||| |||
Sbjct: 568 gtaatcggtgactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccct 509
Query: 271 cttctacctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagct 330
||| | || ||||||||| ||||||| || ||||| |||||| ||||||||||| |
Sbjct: 508 cttttgccccaagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgt 449
Query: 331 tctggtattcaacctctccataacctcacagtgttgaggttcattgaccagaaggttggt 390
||||||||||||||||| || || ||||| || |||| |||||||| || ||||| ||
Sbjct: 448 tctggtattcaacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcgga 389
Query: 391 gcaggggagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgag 450
|||||||||| | |||| |||||||| || || ||||||||||||||| |||||
Sbjct: 388 acaggggagagcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgag 329
Query: 451 aacctgatacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactg 510
||| ||| | ||||| || || ||||||| ||| | ||||||||||||||||||
Sbjct: 328 aacatga------tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactg 275
Query: 511 gcagatgtattccttgcaccccagat 536
||||| ||||||||||||||||||||
Sbjct: 274 gcagacgtattccttgcaccccagat 249
>gb|BJ550139.1|BJ550139 BJ550139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m16 3', mRNA sequence
Length = 684
Score = 165 bits (83), Expect = 3e-039
Identities = 265/326 (81%), Gaps = 6/326 (1%)
Strand = Plus / Minus
Query: 211 gtaataggtgactcttacgcgataacactgtatttggaggacaagtacccagagcctcct 270
||||| |||||||||||||| ||| || |||||||||||||||||||||| ||| |||
Sbjct: 670 gtaatcggtgactcttacgcaatagcattgtatttggaggacaagtaccctcagcgccct 611
Query: 271 cttctacctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagct 330
||| | || ||||||||| ||||||| || ||||| |||||| ||||||||||| |
Sbjct: 610 cttttgccccaagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgt 551
Query: 331 tctggtattcaacctctccataacctcacagtgttgaggttcattgaccagaaggttggt 390
||||||||||||||||| || || ||||| || |||| |||||||| || ||||| ||
Sbjct: 550 tctggtattcaacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcgga 491
Query: 391 gcaggggagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgag 450
|||||||||| | |||| |||||||| || || ||||||||||||||| |||||
Sbjct: 490 acaggggagagcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgag 431
Query: 451 aacctgatacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactg 510
||| ||| | ||||| || || ||||||| ||| | ||||||||||||||||||
Sbjct: 430 aacatga------tcaaaggctgtgctgggaagtttgctatgggagatgaagtccaactg 377
Query: 511 gcagatgtattccttgcaccccagat 536
||||| ||||||||||||||||||||
Sbjct: 376 gcagacgtattccttgcaccccagat 351
>gb|BI947528.1|BI947528 HVSMEl0005M13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005M13f, mRNA sequence
Length = 499
Score = 155 bits (78), Expect = 3e-036
Identities = 135/154 (87%)
Strand = Plus / Plus
Query: 38 tgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaag 97
||||||| ||||||||||| || ||||||||||| | |||||||| ||||| |||||||
Sbjct: 53 tgtactcatactggcgcagatcctgctcccaccgcgtacgcatcgcgctcaacctcaaag 112
Query: 98 gtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaat 157
| | ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct: 113 gcatcgattatgagtacaaggcggtcaacctcctcaagggcgagcagtctgatcccgagt 172
Query: 158 tcgtcaagcttaatcctatgaagttcgtccctgc 191
|| | |||||||||||||||||| ||||||||||
Sbjct: 173 tcatgaagcttaatcctatgaagctcgtccctgc 206
Score = 63.9 bits (32), Expect = 9e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 220 gactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttctacct 279
||||| ||||| ||| || ||||| |||||||||||||||| ||| |||||| | ||
Sbjct: 235 gactcctacgcaatagcattgtatctggaggacaagtaccctcagcgccctcttttgccc 294
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| |||||||||| |||||||||
Sbjct: 295 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgcgtgctctggtatt 354
Query: 340 caacctct 347
||||||||
Sbjct: 355 caacctct 362
>gb|BE455419.2|BE455419 HVSMEg0017A13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017A13f, mRNA sequence
Length = 587
Score = 115 bits (58), Expect = 3e-024
Identities = 207/257 (80%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 26 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 85
Query: 340 caacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggag 399
|||||||| || || ||||| || |||| |||||||| || ||||| || ||||||||
Sbjct: 86 caacctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggag 145
Query: 400 agtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgata 459
|| | |||| |||||||| || || ||||||||||||||| |||||||| ||||
Sbjct: 146 agcctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatgatc 205
Query: 460 caactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgta 519
||||| || || ||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 206 ------aaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgta 259
Query: 520 ttccttgcaccccagat 536
|||||||||||||||||
Sbjct: 260 ttccttgcaccccagat 276
>gb|AJ462436.1|AJ462436 AJ462436 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078F04F1, mRNA sequence
Length = 360
Score = 109 bits (55), Expect = 2e-022
Identities = 204/254 (80%), Gaps = 6/254 (2%)
Strand = Plus / Plus
Query: 283 gaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtattcaa 342
|||||| ||||||| || ||||| |||||| ||||||||||| |||||||||||||
Sbjct: 1 gaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtattcaa 60
Query: 343 cctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggggagagt 402
||||| || || ||||| || |||| |||||||| || ||||| || ||||||||||
Sbjct: 61 cctcttcacaatctcaccttggtgagattcattgagcaaaaggtcggaacaggggagagc 120
Query: 403 gtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgatacaa 462
| |||| |||||||| || || ||||||||||||||| |||||||| ||||
Sbjct: 121 ctcccgtgggtccaacaacagattgatagaggtttcacagctgttgagaacatgatc--- 177
Query: 463 ctaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgtattc 522
||||| || || ||||||| ||| | ||||||||||||||||||||||| ||||||
Sbjct: 178 ---aaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgtattc 234
Query: 523 cttgcaccccagat 536
||||||||||||||
Sbjct: 235 cttgcaccccagat 248
>gb|CA016359.1|CA016359 HV09D16u HV Hordeum vulgare subsp. vulgare cDNA clone HV09D16
3-PRIME, mRNA sequence
Length = 533
Score = 105 bits (53), Expect = 3e-021
Identities = 184/228 (80%), Gaps = 6/228 (2%)
Strand = Plus / Minus
Query: 309 ccagattgcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgag 368
|||||| ||||||||||| |||||||||||||||||| || || ||||| || ||||
Sbjct: 521 ccagatagcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgag 462
Query: 369 gttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcga 428
|||||||| || ||||| || |||||||||| | |||| |||||||| || ||
Sbjct: 461 attcattgagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattga 402
Query: 429 gagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgc 488
||||||||||||||| |||||||| |||| ||||| || || ||||||| |||
Sbjct: 401 tagaggtttcacagctgttgagaacatgatc------aaaggctgtgctgggaagtttgc 348
Query: 489 aacaggagatgaagtccaactggcagatgtattccttgcaccccagat 536
| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 347 tatgggagatgaagtccaactggcagacgtattccttgcaccccagat 300
>gb|BU967702.1|BU967702 HB05C06r BC Hordeum vulgare subsp. vulgare cDNA clone HB05C06
5-PRIME, mRNA sequence
Length = 377
Score = 103 bits (52), Expect = 1e-020
Identities = 183/227 (80%), Gaps = 6/227 (2%)
Strand = Plus / Plus
Query: 310 cagattgcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgagg 369
||||| ||||||||||| |||||||||||||||||| || || ||||| || ||||
Sbjct: 30 cagatagcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgaga 89
Query: 370 ttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgag 429
|||||||| || ||||| || |||||||||| | |||| |||||||| || ||
Sbjct: 90 ttcattgagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattgat 149
Query: 430 agaggtttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgca 489
||||||||||||||| |||||||| |||| ||||| || || ||||||| |||
Sbjct: 150 agaggtttcacagctgttgagaacatgatc------aaaggctgtgctgggaagtttgct 203
Query: 490 acaggagatgaagtccaactggcagatgtattccttgcaccccagat 536
| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 atgggagatgaagtccaactggcagacgtattccttgcaccccagat 250
>gb|BQ658168.1|BQ658168 HA05H06u HA Hordeum vulgare subsp. vulgare cDNA clone HA05H06
3-PRIME, mRNA sequence
Length = 620
Score = 95.6 bits (48), Expect = 2e-018
Identities = 206/258 (79%), Gaps = 7/258 (2%)
Strand = Plus / Minus
Query: 280 caagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggtatt 339
||||||||| ||||||| || ||||| |||||| ||||||||||| ||||||||||
Sbjct: 616 caagaccttgaaaagaaggccctgaatatccagatagcaagcattgtgtgttctggtatt 557
Query: 340 caacctct-ccataacctcacagtgttgaggttcattgaccagaaggttggtgcagggga 398
|||||||| || || ||||| || |||| |||||||| || ||||| || |||||||
Sbjct: 556 caacctcttncacaatctcaccttggtgagattcattgagcaaaaggtcggaacagggga 497
Query: 399 gagtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctgat 458
||| | |||| |||||||| || || |||||||||||| || |||||||| ||||
Sbjct: 496 gagcctcccgtgggtccaacaacagattgatagaggtttcacaactgttgagaacatgat 437
Query: 459 acaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagatgt 518
||||| || || ||||||| ||| | ||||||||||||||||||||||| ||
Sbjct: 436 c------aaaggctgtgctgggaagtttgctatgggagatgaagtccaactggcagacgt 383
Query: 519 attccttgcaccccagat 536
||||||||||||||||||
Sbjct: 382 attccttgcaccccagat 365
>gb|AJ462435.1|AJ462435 AJ462435 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019H02F1, mRNA sequence
Length = 360
Score = 91.7 bits (46), Expect = 4e-017
Identities = 177/221 (80%), Gaps = 6/221 (2%)
Strand = Plus / Plus
Query: 316 gcaagcattgtagcttctggtattcaacctctccataacctcacagtgttgaggttcatt 375
||||||||||| |||||||||||||||||| || || ||||| || |||| ||||||
Sbjct: 2 gcaagcattgtgtgttctggtattcaacctcttcacaatctcaccttggtgagattcatt 61
Query: 376 gaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagagaggt 435
|| || ||||| || |||||||||| | |||| |||||||| || || ||||||
Sbjct: 62 gagcaaaaggtcggaacaggggagagcctcccgtgggtccaacaacagattgatagaggt 121
Query: 436 ttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtatgcaacagga 495
||||||||| |||||||| |||| ||||| || || ||||||| ||| | |||
Sbjct: 122 ttcacagctgttgagaacatgatc------aaaggctgtgctgggaagtttgctatggga 175
Query: 496 gatgaagtccaactggcagatgtattccttgcaccccagat 536
|||||||||||||||||| | ||||||||||||||||||||
Sbjct: 176 gatgaagtccaactggcatacgtattccttgcaccccagat 216
>gb|AL501950.1|AL501950 AL501950 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05P05u 3', mRNA sequence
Length = 572
Score = 85.7 bits (43), Expect = 2e-015
Identities = 102/122 (83%), Gaps = 6/122 (4%)
Strand = Plus / Minus
Query: 415 caacaacaaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgc 474
|||||||| || || ||||||||||||||| |||||||| |||| ||||| ||
Sbjct: 499 caacaacagattgatagaggtttcacagctgttgagaacatgatc------aaaggctgt 446
Query: 475 gccgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccag 534
|| ||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 gctgggaagtttgctatgggagatgaagtccaactggcagacgtattccttgcaccccag 386
Query: 535 at 536
||
Sbjct: 385 at 384
>gb|BU990367.1|BU990367 HF24N04r HF Hordeum vulgare subsp. vulgare cDNA clone HF24N04
5-PRIME, mRNA sequence
Length = 519
Score = 85.7 bits (43), Expect = 2e-015
Identities = 102/122 (83%), Gaps = 6/122 (4%)
Strand = Plus / Plus
Query: 415 caacaacaaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgc 474
|||||||| || || ||||||||||||||| |||||||| |||| ||||| ||
Sbjct: 33 caacaacagattgatagaggtttcacagctgttgagaacatgatc------aaaggctgt 86
Query: 475 gccgggaagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccag 534
|| ||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 87 gctgggaagtttgctatgggagatgaagtccaactggcagacgtattccttgcaccccag 146
Query: 535 at 536
||
Sbjct: 147 at 148
>gb|BQ754649.1|BQ754649 EBed01_SQ003_G16_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_G16 5', mRNA sequence
Length = 477
Score = 79.8 bits (40), Expect = 1e-013
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 493 ggagatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 40 ggagatgaagtccaactggcagacgtattccttgcaccccagat 83
>gb|CA000846.1|CA000846 HS06M06u HS Hordeum vulgare subsp. vulgare cDNA clone HS06M06
3-PRIME, mRNA sequence
Length = 326
Score = 79.8 bits (40), Expect = 1e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 493 ggagatgaagtccaactggcagatgtattccttgcaccccagat 536
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 287 ggagatgaagtccaactggcagacgtattccttgcaccccagat 244
>gb|BF629992.2|BF629992 HVSMEb0007J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007J09f, mRNA sequence
Length = 496
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 117 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 176
Query: 114 caaggc 119
||||||
Sbjct: 177 caaggc 182
>gb|BF254477.2|BF254477 HVSMEf0004C05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004C05f, mRNA sequence
Length = 863
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 144 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 203
Query: 114 caaggc 119
||||||
Sbjct: 204 caaggc 209
>gb|BF258825.2|BF258825 HVSMEf0016M11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016M11f, mRNA sequence
Length = 591
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 57 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 116
Query: 114 caaggc 119
||||||
Sbjct: 117 caaggc 122
>gb|BE601932.2|BE601932 HVSMEh0100D18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100D18f, mRNA sequence
Length = 709
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 189 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 248
Query: 114 caaggc 119
||||||
Sbjct: 249 caaggc 254
>gb|BG368555.1|BG368555 HVSMEi0019L09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019L09f, mRNA sequence
Length = 624
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 122 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 181
Query: 114 caaggc 119
||||||
Sbjct: 182 caaggc 187
>gb|BI949597.1|BI949597 HVSMEl0014N07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0014N07f, mRNA sequence
Length = 861
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 62 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 121
Query: 114 caaggc 119
||||||
Sbjct: 122 caaggc 127
>gb|BE214923.1|BE214923 HV_CEb0005D01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005D01f, mRNA sequence
Length = 920
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 281 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 340
Query: 114 caaggc 119
||||||
Sbjct: 341 caaggc 346
>gb|BG415780.1|BG415780 HVSMEk0007M14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007M14f, mRNA sequence
Length = 671
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 156 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 215
Query: 114 caaggc 119
||||||
Sbjct: 216 caaggc 221
>gb|BQ471154.1|BQ471154 HV01D22T HV Hordeum vulgare subsp. vulgare cDNA clone HV01D22
5-PRIME, mRNA sequence
Length = 561
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 103 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 162
Query: 114 caaggc 119
||||||
Sbjct: 163 caaggc 168
>gb|BQ753274.1|BQ753274 EBan01_SQ001_B08_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_B08 5', mRNA sequence
Length = 650
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 181 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 240
Query: 114 caaggc 119
||||||
Sbjct: 241 caaggc 246
>gb|CA014931.1|CA014931 HT12M06r HT Hordeum vulgare subsp. vulgare cDNA clone HT12M06
5-PRIME, mRNA sequence
Length = 643
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||||| ||| ||||||||||| |||||||||||||| || |||||
Sbjct: 25 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 84
Query: 114 caaggc 119
||||||
Sbjct: 85 caaggc 90
>gb|CA032242.1|CA032242 HX12H05r HX Hordeum vulgare subsp. vulgare cDNA clone HX12H05
5-PRIME, mRNA sequence
Length = 654
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
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Sbjct: 128 cagctcttgctctcaccgtgtccggatcgctctcaacctcaaaggtgtggactatgagta 187
Query: 114 caaggc 119
||||||
Sbjct: 188 caaggc 193
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,979
Number of Sequences: 312970
Number of extensions: 77979
Number of successful extensions: 21073
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20886
Number of HSP's gapped (non-prelim): 181
length of query: 913
length of database: 175,134,539
effective HSP length: 19
effective length of query: 894
effective length of database: 169,188,109
effective search space: 151254169446
effective search space used: 151254169446
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)