BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829259.2.1
(1019 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 420 e-116
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 391 e-107
gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA li... 212 2e-053
gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, dro... 176 9e-043
gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA li... 165 4e-039
gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA li... 153 1e-035
gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA li... 92 4e-017
gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA li... 92 4e-017
gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA li... 76 3e-012
gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA li... 76 3e-012
gb|BM100886.1|BM100886 EBpi01_SQ002_E12_R pistil, 1 DPA, no... 62 4e-008
gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots... 52 4e-005
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 52 4e-005
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 52 4e-005
gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. v... 52 4e-005
gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. v... 52 4e-005
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 52 4e-005
gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed D... 52 4e-005
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 46 0.002
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 44 0.009
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 44 0.009
gb|BG370002.2|BG370002 HVSMEi0026O13f Hordeum vulgare 20 DA... 40 0.14
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 420 bits (212), Expect = e-116
Identities = 441/516 (85%), Gaps = 1/516 (0%)
Strand = Plus / Minus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 530 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 471
Query: 536 gctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatca 595
|||||||||| ||| |||||||||||||| | | || |||||||||||| || |||
Sbjct: 470 gctttccagttgagttctctctctgctttaccagttcctgcaaagagaatctccgcgtca 411
Query: 596 ccaggacgccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgca 655
||||| || || || || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 410 ccagggcggcgctgaccgacgaccagcgggattttctttccagaagccttctcgaatgca 351
Query: 656 ttgactatctccaacactgatgttccttttccggttccaaggttgtatgcttcacatcct 715
|| ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||
Sbjct: 350 tttactatctccaacactgacgtcccttttccagttccaaggttgtatggttcacatcct 291
Query: 716 atgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaaggtca 775
|||||||| || || ||||||||||||| || ||| || ||| || |||||||| |||
Sbjct: 290 atgttagacgaactatcaaaaagcttccgtagtgcagcaatatgcccctcagcaagatca 231
Query: 776 accacatgagatataatcacgaacccctgtcccatcctttgttgcgtagttatttccaaa 835
| ||||||| |||||||| || ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 230 agcacatga-atataatctcgtaccccagtcccatctttagttgcatagttatttccaaa 172
Query: 836 tattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcataaggttgtt 895
||||| | || |||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 171 gattgtcactgacggcctcctcccaacagcaacttgctgaacgaagggcataaggttgtt 112
Query: 896 aggagttccacatgggtcttcaccaaggtatccactggggtgagccccaactggattaaa 955
||| ||||| ||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 111 tggaactccacgtgggtcttcaccaaggtatccactggggtgagccccaaccgggttgaa 52
Query: 956 gtacctaagcaaaatgatattccattcaggatctga 991
|||||||| |||||||| |||| |||| ||||||
Sbjct: 51 atacctaagtaaaatgatcctccactcagaatctga 16
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 391 bits (197), Expect = e-107
Identities = 411/481 (85%), Gaps = 1/481 (0%)
Strand = Plus / Minus
Query: 490 agcccagttccacaggtctccgcacatttctgtgatgccatatttcgctttccagtggag 549
||||||||||||| |||| | |||||| || ||||||||||| || |||||||||| |||
Sbjct: 540 agcccagttccactggtccctgcacatctccgtgatgccatactttgctttccagttgag 481
Query: 550 ctctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttg 609
|||||||||||||| | | || |||||||||||| || |||||||| || || ||
Sbjct: 480 ttctctctctgctttaccagttcctgcaaagagaatctccgcgtcaccagggcggcgctg 421
Query: 610 gcccatgaccaaagggattttctttccagaagccttctcaaatgcattgactatctccaa 669
|| | ||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 420 accgacgaccagcgggattttctttccagaagccttctcgaatgcatttactatctccaa 361
Query: 670 cactgatgttccttttccggttccaaggttgtatgcttcacatcctatgttagatgagct 729
|||||| || |||||||| |||||||||||||||| |||||||||||||||||| || ||
Sbjct: 360 cactgacgtcccttttccagttccaaggttgtatggttcacatcctatgttagacgaact 301
Query: 730 ttcaaaaagcttccttaatgcgaaaagatgtccttcagcaaggtcaaccacatgagatat 789
||||||||||||| || ||| || ||| || |||||||| |||| ||||||| ||||
Sbjct: 300 atcaaaaagcttccgtagtgcagcaatatgcccctcagcaagatcaagcacatga-atat 242
Query: 790 aatcacgaacccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatg 849
|||| || ||||| |||||||| || ||||| |||||||||||||| ||||| | || |
Sbjct: 241 aatctcgtaccccagtcccatctttagttgcatagttatttccaaagattgtcactgacg 182
Query: 850 gcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatg 909
||||||| ||||| |||| ||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 181 gcctcctcccaacagcaacttgctgaacgaagggcataaggttgtttggaactccacgtg 122
Query: 910 ggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaa 969
||||||||||||||||||||||||||||||||||||| || || || |||||||| ||||
Sbjct: 121 ggtcttcaccaaggtatccactggggtgagccccaaccgggttgaaatacctaagtaaaa 62
Query: 970 t 970
|
Sbjct: 61 t 61
>gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 5', mRNA sequence
Length = 588
Score = 212 bits (107), Expect = 2e-053
Identities = 209/243 (86%)
Strand = Plus / Minus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 244 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 185
Query: 536 gctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatca 595
|||||||||| ||| |||||||||||||| | | || |||||||||||| || |||
Sbjct: 184 gctttccagttgagttctctctctgctttaccagttcctgcaaagagaatctcggcgtca 125
Query: 596 ccaggacgccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgca 655
||||| || || || || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 124 ccagggcggcgctgaccgacgaccagcgggattttctttccagaagccttctcgaatgca 65
Query: 656 ttgactatctccaacactgatgttccttttccggttccaaggttgtatgcttcacatcct 715
|| ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||
Sbjct: 64 tttactatctccaacactgacgtcccttttccagttccaaggttgtatggttcacatcct 5
Query: 716 atg 718
|||
Sbjct: 4 atg 2
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 541 agaattgaattagctggttgactatagcaag 511
>gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C17 5', mRNA sequence
Length = 639
Score = 176 bits (89), Expect = 9e-043
Identities = 188/221 (85%)
Strand = Plus / Minus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 221 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 162
Query: 536 gctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatca 595
|||||||||| ||| |||||||||||||| | | || |||||||||||| || |||
Sbjct: 161 gctttccagttgagttctctctctgctttaccagttcctgcaaagagaatctccgcgtca 102
Query: 596 ccaggacgccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgca 655
||||| || || || || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 101 ccagggcggcgctgaccgacgaccagcgggattttctttccagaagccttctcgaatgca 42
Query: 656 ttgactatctccaacactgatgttccttttccggttccaag 696
|| ||||||||||||||||| || |||||||| ||||||||
Sbjct: 41 tttactatctccaacactgacgtcccttttccagttccaag 1
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 518 agaattgaattagctggttgactatagcaag 488
>gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 3', mRNA sequence
Length = 667
Score = 165 bits (83), Expect = 4e-039
Identities = 179/211 (84%)
Strand = Plus / Plus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 457 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 516
Query: 536 gctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatca 595
|||||||||| ||| |||||||||||||| | | || |||||||||||| || |||
Sbjct: 517 gctttccagttgagttctctctctgctttaccagttcctgcaaagagaatctccgcgtca 576
Query: 596 ccaggacgccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgca 655
||||| || || || || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 577 ccagggcggcgctgaccgacgaccagcgggattttctttccagaagccttctcgaatgca 636
Query: 656 ttgactatctccaacactgatgttccttttc 686
|| ||||||||||||||||| || |||||||
Sbjct: 637 tttactatctccaacactgacgtcccttttc 667
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 160 agaattgaattagctggttgactatagcaag 190
>gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 3', mRNA sequence
Length = 579
Score = 153 bits (77), Expect = 1e-035
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 379 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 438
Query: 536 gctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatca 595
|||||||||| ||| |||||||||||||| | | || |||||||||||| || |||
Sbjct: 439 gctttccagttgagttctctctctgctttaccagttcctgcaaagagaatctcggcgtca 498
Query: 596 ccaggacgccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgca 655
||||| || || || || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 499 ccagggcggcgctgaccgacgaccagcgggattttctttccagaagccttctcgaatgca 558
Query: 656 ttgactatctccaacactga 675
|| ||||||| |||||||||
Sbjct: 559 tttactatctncaacactga 578
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 82 agaattgaattagctggttgactatagcaag 112
>gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 3', mRNA sequence
Length = 468
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 383 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 442
Query: 536 gctttccagtggagctctctctctgc 561
|||||||||| ||| |||||||||||
Sbjct: 443 gctttccagttgagttctctctctgc 468
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 86 agaattgaattagctggttgactatagcaag 116
>gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 3', mRNA sequence
Length = 469
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 384 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 443
Query: 536 gctttccagtggagctctctctctgc 561
|||||||||| ||| |||||||||||
Sbjct: 444 gctttccagttgagttctctctctgc 469
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 87 agaattgaattagctggttgactatagcaag 117
>gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 5', mRNA sequence
Length = 488
Score = 75.8 bits (38), Expect = 3e-012
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 72 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 13
Query: 536 gctttccagt 545
||||||||||
Sbjct: 12 gctttccagt 3
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 369 agaattgaattagctggttgactatagcaag 339
>gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 5', mRNA sequence
Length = 492
Score = 75.8 bits (38), Expect = 3e-012
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 476 taagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttc 535
|||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| ||
Sbjct: 76 taagggttcttgctagcccagttccactggtccctgcacatctccgtgatgccatacttt 17
Query: 536 gctttccagt 545
||||||||||
Sbjct: 16 gctttccagt 7
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 373 agaattgaattagctggttgactatagcaag 343
>gb|BM100886.1|BM100886 EBpi01_SQ002_E12_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_E12 5', mRNA sequence
Length = 410
Score = 61.9 bits (31), Expect = 4e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 195 agaattgaattagctggttgactatagcaag 225
|||||||||||||||||||||||||||||||
Sbjct: 289 agaattgaattagctggttgactatagcaag 259
>gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D01u 3', mRNA sequence
Length = 468
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 396 tcttgcttgcccagttccacaggtctctgcacat 429
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 355 tcttgcttgcccagttccacaggtctctgcacat 388
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 489 accagagggattttctttccgcaagccttctcgaatgc 526
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 438 tcttgcttgcccagttccacaggtctctgcacat 405
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 304 accagagggattttctttccgcaagccttctcgaatgc 267
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 432 tcttgcttgcccagttccacaggtctctgcacat 399
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 298 accagagggattttctttccgcaagccttctcgaatgc 261
>gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11O08
3-PRIME, mRNA sequence
Length = 477
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 372 tcttgcttgcccagttccacaggtctctgcacat 405
>gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C10
3-PRIME, mRNA sequence
Length = 503
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 368 tcttgcttgcccagttccacaggtctctgcacat 401
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 525 tcttgcttgcccagttccacaggtctctgcacat 492
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 391 accagagggattttctttccgcaagccttctcgaatgc 354
>gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B01
5-PRIME, mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 283 tcttgcttgcccagttccacaggtctctgcacat 250
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 149 accagagggattttctttccgcaagccttctcgaatgc 112
>gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03cd03, mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacat 516
||||||| ||||||||||||||||||| ||||||
Sbjct: 383 tcttgcttgcccagttccacaggtctctgcacat 416
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 478 agggctcttgctagcccagttccacaggtctccgcacat 516
|||| ||||||| ||| ||||||||||||||| ||||||
Sbjct: 643 agggttcttgcttgccaagttccacaggtctctgcacat 605
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 504 accagagggattttctttccgcaagccttctcgaatgc 467
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 347 accagagggattttctttccgcaagccttctcgaatgc 310
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 617 accaaagggattttctttccagaagccttctcaaatgc 654
|||| ||||||||||||||| |||||||||| |||||
Sbjct: 560 accagagggattttctttccgcaagccttctcgaatgc 523
>gb|BG370002.2|BG370002 HVSMEi0026O13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026O13f, mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccg 606
||||||||||||||||||||
Sbjct: 198 tcagcatcaccaggacgccg 217
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,407
Number of Sequences: 312970
Number of extensions: 78407
Number of successful extensions: 19123
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19057
Number of HSP's gapped (non-prelim): 64
length of query: 1019
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1000
effective length of database: 169,188,109
effective search space: 169188109000
effective search space used: 169188109000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)