BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802544.2.1
(814 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG366389.2|BG366389 HVSMEi0006O04f Hordeum vulgare 20 DA... 180 5e-044
gb|CA025221.1|CA025221 HZ51I21r HZ Hordeum vulgare subsp. v... 174 3e-042
gb|BF627283.3|BF627283 HVSMEb0004H03f Hordeum vulgare seedl... 119 1e-025
gb|CA022392.1|CA022392 HZ42P20r HZ Hordeum vulgare subsp. v... 101 4e-020
gb|CA022456.1|CA022456 HZ43D23r HZ Hordeum vulgare subsp. v... 84 8e-015
gb|AJ461820.1|AJ461820 AJ461820 S00002 Hordeum vulgare subs... 58 5e-007
gb|CA029511.1|CA029511 HZ65G22r HZ Hordeum vulgare subsp. v... 50 1e-004
>gb|BG366389.2|BG366389 HVSMEi0006O04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006O04f, mRNA sequence
Length = 940
Score = 180 bits (91), Expect = 5e-044
Identities = 467/592 (78%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 135 ttcatgtactcatccatgcgggtatactgaacctctgggtacaacagagtagcgtctgct 194
||||||||||| ||||| | ||| ||||||||||||||||| | |||| ||| ||| ||
Sbjct: 602 ttcatgtactcgtccatcctggtgtactgaacctctgggtagagtagagaagcctcttct 543
Query: 195 ---ccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatag 251
||||| | ||||| ||| | |||||||||||||| |||||||||||||| || ||
Sbjct: 542 tccccatcatgtccgatctcanagtttgtcaagcaaccctcatagaaaatgtgatagtaa 483
Query: 252 tgtcccactccggcttgattggccaagtcagtacctttcattgaagccaagaattcatct 311
|| || | || | ||||| || | ||| |||||||||||||| ||||||||||||||
Sbjct: 482 tgccctatccccacctgattagcaaggtctgtacctttcattgacgccaagaattcatca 423
Query: 312 gcaggaatgtggattttctccagaacgtttccggaaagcttttcccacttcgagataaca 371
|||||| | |||||||| ||||| ||||| || | ||||||||| || | || |
Sbjct: 422 ctcggaatgggaattttctcaagaacctttcccgagaccttttcccatttagcaatcaac 363
Query: 372 tcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcga 431
|| || ||| | | ||||||||| |||| | || ||||| |||||||||||| || |
Sbjct: 362 tcattctgactaaggatgttttcctgtggccgtaggtatattgtcttgttcaaggccagt 303
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagct 491
|||||||||| |||||||||| |||| ||||| || ||||| || ||||| |||
Sbjct: 302 ggatcatcaatgcacttgattgtgtacgctgcaatgtcatcttcgtccatgaataccgct 243
Query: 492 ttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatc 551
||||| ||||| |||||||| || |||||||| || ||||| || | |||||| | |||
Sbjct: 242 ttgacgttgccatctccataaacgtgaactttctccttgggtggaagaagggtacccatt 183
Query: 552 tgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgagga 611
||||| | ||| || |||||||||||||||||| || ||||||| |||||||| |||
Sbjct: 182 tgacacaagttaggagcaaagtaagcagcaaagcagttagcagaaatgtaggtgtgggga 123
Query: 612 atgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttcct 671
||||| |||||||| || | |||| |||||||| ||||||||||| | |||||||
Sbjct: 122 atgtttctttcttctatcgcccttcttatctccatcttctcatcaaatgtgatccttcct 63
Query: 672 ggttcaagagcatgccccatcttggatggatccatgccgaattccgatggta 723
|||||||| ||||| |||||| | | ||| |||||||||||||| |||||||
Sbjct: 62 ggttcaagggcatgtcccatccttgctgggtccatgccgaattcagatggta 11
>gb|CA025221.1|CA025221 HZ51I21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51I21
5-PRIME, mRNA sequence
Length = 578
Score = 174 bits (88), Expect = 3e-042
Identities = 412/520 (79%)
Strand = Plus / Minus
Query: 204 ccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatagtgtcccactccg 263
||||| ||||| |||||||||||||| |||||||||||||| || || || || | ||
Sbjct: 567 ccgatctcaaagtttgtcaagcaaccctcatagaaaatgtgatagtaatgccctatcccc 508
Query: 264 gcttgattggccaagtcagtacctttcattgaagccaagaattcatctgcaggaatgtgg 323
| ||||| || | ||| |||||||||||||| |||||||||||||| |||||| |
Sbjct: 507 acctgattagcaaggtctgtacctttcattgacgccaagaattcatcactcggaatggga 448
Query: 324 attttctccagaacgtttccggaaagcttttcccacttcgagataacatcgttttgagtc 383
|||||||| ||||| ||||| || | ||||||||| || | || | || || ||| |
Sbjct: 447 attttctcaagaacctttcccgagaccttttcccatttagcaatcaactcattctgacta 388
Query: 384 aagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaaca 443
| ||||||||| |||| | || ||||| |||||||||||| || | ||||||||||
Sbjct: 387 aggatgttttcctgtggccgtaggtatattgtcttgttcaaggccagtggatcatcaatg 328
Query: 444 gacttgattgtatacgttgcaacatcgtcttcatcacagaatatagctttgacattgccg 503
|||||||||| |||| ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 327 cacttgattgtgtacgctgcaatgtcatcttcgtccatgaataccgctttgacgttgcca 268
Query: 504 tctccatatacatgaactttttctttgggcggcaaaagggtgcgcatctgacataggttt 563
|||||||| || |||||||| || ||||| || | |||||| | ||| ||||| | |||
Sbjct: 267 tctccatagacgtgaactttctccttgggtggaagaagggtacccatttgacacaagtta 208
Query: 564 gggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatgttggcatct 623
|| |||||||||||||||||| || ||||||| |||||||| |||||||| |||
Sbjct: 207 ggagcaaagtaagcagcaaagcagttagcagaaatgtaggtgtggggaatgtttctttct 148
Query: 624 tctattgcacgccttaggtccatcttttcatcaaatgtaacccttcctggttcaagagca 683
||||| || | |||| |||||||| ||||||||||| | ||||||||||||||| |||
Sbjct: 147 tctatcgcccttcttatctccatcttctcatcaaatgtgatccttcctggttcaagggca 88
Query: 684 tgccccatcttggatggatccatgccgaattccgatggta 723
|| |||||| | | ||| |||||||||||||| |||||||
Sbjct: 87 tgtcccatccttgctgggtccatgccgaattcagatggta 48
>gb|BF627283.3|BF627283 HVSMEb0004H03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H03f, mRNA sequence
Length = 770
Score = 119 bits (60), Expect = 1e-025
Identities = 234/292 (80%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagct 491
|||||||||| |||||||||| |||| ||||| || ||||| || ||||| |||
Sbjct: 644 ggatcatcaatgcacttgattgtgtacgctgcaatgtcatcttcgtccatgaataccgct 585
Query: 492 ttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatc 551
||||| ||||| | |||||| || |||||||| || ||||| || | |||||| | |||
Sbjct: 584 ttgacgttgccatatccataaacgtgaactttctccttgggtggaagaagggtacccatt 525
Query: 552 tgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgagga 611
||||| | ||| || |||||||||||||||||| || ||||||| |||||||| |||
Sbjct: 524 tgacacaagttaggagcaaagtaagcagcaaagcagttagcagaaatgtaggtgtgggga 465
Query: 612 atgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttcct 671
||||| |||||||| || | |||| |||||||| ||||||||||| | |||||||
Sbjct: 464 atgtttctttcttctatcgcccttcttatctccatcttctcatcaaatgtgatccttcct 405
Query: 672 ggttcaagagcatgccccatcttggatggatccatgccgaattccgatggta 723
|||||||| ||||| |||||| | | ||| |||||||||||||| |||||||
Sbjct: 404 ggttcaagggcatgtcccatccttgctgggtccatgccgaattcagatggta 353
>gb|CA022392.1|CA022392 HZ42P20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42P20
5-PRIME, mRNA sequence
Length = 547
Score = 101 bits (51), Expect = 4e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 569 aaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatgttggcatcttctat 628
|||||||||||||||||| || ||||||| |||||||| | |||||| ||||||||
Sbjct: 519 aaagtaagcagcaaagcagttagcagaaatgtaggtgtgggcaatgtttctttcttctat 460
Query: 629 tgcacgccttaggtccatcttttcatcaaatgtaacccttcctggttcaagagcatgccc 688
|| | |||| |||||||| ||||||||||| | ||||||||||||||| ||||| ||
Sbjct: 459 cgcccttcttatctccatcttctcatcaaatgtgatccttcctggttcaagggcatgtcc 400
Query: 689 catcttggatggatccatgccgaattccgatggta 723
|||| | | ||| |||||||||||||| |||||||
Sbjct: 399 catccttgctgggtccatgccgaattcagatggta 365
>gb|CA022456.1|CA022456 HZ43D23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43D23
5-PRIME, mRNA sequence
Length = 536
Score = 83.8 bits (42), Expect = 8e-015
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 642 tccatcttttcatcaaatgtaacccttcctggttcaagagcatgccccatcttggatgga 701
|||||||| ||||||||||| | ||||||||||||||| ||||| |||||| | | |||
Sbjct: 481 tccatcttctcatcaaatgtgatccttcctggttcaagggcatgtcccatccttgctggg 422
Query: 702 tccatgccgaattccgatggta 723
|||||||||||||| |||||||
Sbjct: 421 tccatgccgaattcagatggta 400
>gb|AJ461820.1|AJ461820 AJ461820 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012E06F1, mRNA sequence
Length = 180
Score = 58.0 bits (29), Expect = 5e-007
Identities = 89/109 (81%)
Strand = Plus / Minus
Query: 138 atgtactcatccatgcgggtatactgaacctctgggtacaacagagtagcgtctgctcca 197
|||||||| ||||| ||||| || |||||||||||||| | |||| ||| || |||||
Sbjct: 180 atgtactcctccatccgggtgtattgaacctctgggtagagtagagaagcttcctctcca 121
Query: 198 tcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggt 246
|| || || || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 120 tcctccccaatatcaaagtttgttgagcaaccctcgtagaaaatgtggt 72
>gb|CA029511.1|CA029511 HZ65G22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65G22
5-PRIME, mRNA sequence
Length = 549
Score = 50.1 bits (25), Expect = 1e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 286 ctttcattgaagccaagaattcatctgcaggaatgtggattttctccagaacgtttccgg 345
|||||||||| |||||||||||||| |||||| | |||||||| ||||| ||||| |
Sbjct: 121 ctttcattgacgccaagaattcatcactcggaatgggaattttctcaagaacctttcccg 62
Query: 346 aaagcttttccca 358
| | |||||||||
Sbjct: 61 agaccttttccca 49
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,869
Number of Sequences: 312970
Number of extensions: 59869
Number of successful extensions: 16151
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16133
Number of HSP's gapped (non-prelim): 12
length of query: 814
length of database: 175,134,539
effective HSP length: 19
effective length of query: 795
effective length of database: 169,188,109
effective search space: 134504546655
effective search space used: 134504546655
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)