BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802297.2.1
         (606 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB859122.1|CB859122  HI09G17w HI Hordeum vulgare subsp. v...    48   3e-004
gb|CB859989.1|CB859989  HI12E03w HI Hordeum vulgare subsp. v...    48   3e-004
gb|CK122193.1|CK122193  BES1824101p15 BES1824 Hordeum vulgar...    42   0.021
gb|BF255865.2|BF255865  HVSMEf0008A17f Hordeum vulgare seedl...    40   0.082
gb|BG309465.1|BG309465  HVSMEc0010F16f Hordeum vulgare seedl...    38   0.32 

>gb|CB859122.1|CB859122 HI09G17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09G17
           3-PRIME, mRNA sequence
          Length = 565

 Score = 48.1 bits (24), Expect = 3e-004
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 106 cttcctgggccgcccgtggaaggagcactcgcgcac 141
           |||||| ||||| |||||||||||| ||||||||||
Sbjct: 377 cttcctcggccggccgtggaaggagtactcgcgcac 342



>gb|CB859989.1|CB859989 HI12E03w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E03
           3-PRIME, mRNA sequence
          Length = 521

 Score = 48.1 bits (24), Expect = 3e-004
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 106 cttcctgggccgcccgtggaaggagcactcgcgcac 141
           |||||| ||||| |||||||||||| ||||||||||
Sbjct: 378 cttcctcggccggccgtggaaggagtactcgcgcac 343



>gb|CK122193.1|CK122193 BES1824101p15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
           MPMGp2010P151 5-PRIME, mRNA sequence
          Length = 641

 Score = 42.1 bits (21), Expect = 0.021
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 106 cttcctgggccgcccgtggaaggagcactcgcg 138
           |||||| ||||| |||||||||||| |||||||
Sbjct: 592 cttcctcggccggccgtggaaggagtactcgcg 624



>gb|BF255865.2|BF255865 HVSMEf0008A17f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0008A17f, mRNA sequence
          Length = 896

 Score = 40.1 bits (20), Expect = 0.082
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  ggagaggcggtcggtgggcg 35
           ||||||||||||||||||||
Sbjct: 818 ggagaggcggtcggtgggcg 837



>gb|BG309465.1|BG309465 HVSMEc0010F16f Hordeum vulgare seedling shoot EST library
           HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEc0010F16f, mRNA sequence
          Length = 910

 Score = 38.2 bits (19), Expect = 0.32
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 391 cccggggctgctgccgcagcagc 413
           ||||||||||| |||||||||||
Sbjct: 157 cccggggctgcagccgcagcagc 179



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,201
Number of Sequences: 312970
Number of extensions: 68201
Number of successful extensions: 19884
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19875
Number of HSP's gapped (non-prelim): 9
length of query: 606
length of database: 175,134,539
effective HSP length: 19
effective length of query: 587
effective length of database: 169,188,109
effective search space: 99313419983
effective search space used: 99313419983
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)