BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 605 e-171
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 476 e-133
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 315 2e-084
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 315 2e-084
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 315 2e-084
gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow st... 139 2e-031
gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow st... 86 3e-015
gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots... 60 1e-007
gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots... 60 1e-007
gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedl... 60 1e-007
gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike... 60 1e-007
gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedl... 60 1e-007
gb|BF616370.3|BF616370 HVSMEc0007A02f Hordeum vulgare seedl... 60 1e-007
gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ466489.1|BJ466489 BJ466489 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ476665.1|BJ476665 BJ476665 K. Sato unpublished cDNA li... 60 1e-007
gb|BQ460921.1|BQ460921 HE01M06r HE Hordeum vulgare subsp. v... 60 1e-007
gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, n... 60 1e-007
gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, n... 60 1e-007
gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, wat... 60 1e-007
gb|BQ764551.1|BQ764551 EBca01_SQ004_O06_R carpel, pre-anthe... 60 1e-007
gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthe... 60 1e-007
gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. v... 60 1e-007
gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. v... 60 1e-007
gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. v... 60 1e-007
gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. v... 60 1e-007
gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. v... 60 1e-007
gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. v... 60 1e-007
gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgar... 60 1e-007
gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgar... 60 1e-007
gb|CA003910.1|CA003910 HS15O21r HS Hordeum vulgare subsp. v... 54 9e-006
gb|BI776278.2|BI776278 EBem04_SQ001_F10_R embryo, 12 DPA, n... 52 4e-005
gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no... 52 4e-005
gb|BJ460376.1|BJ460376 BJ460376 K. Sato unpublished cDNA li... 46 0.002
gb|AL502569.1|AL502569 AL502569 Hordeum vulgare Barke roots... 44 0.009
gb|AL502947.1|AL502947 AL502947 Hordeum vulgare Barke roots... 42 0.034
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 42 0.034
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 42 0.034
gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA li... 42 0.034
gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA li... 42 0.034
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 42 0.034
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 42 0.034
gb|AV931773.1|AV931773 AV931773 K. Sato unpublished cDNA li... 42 0.034
gb|BM817001.1|BM817001 HC05E10_T3.ab1 HC Hordeum vulgare su... 42 0.034
gb|AJ432815.1|AJ432815 AJ432815 S00002 Hordeum vulgare subs... 42 0.034
gb|AJ460671.1|AJ460671 AJ460671 S00002 Hordeum vulgare subs... 42 0.034
gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subs... 42 0.034
gb|BJ452829.1|BJ452829 BJ452829 K. Sato unpublished cDNA li... 42 0.034
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 42 0.034
gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA li... 42 0.034
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 42 0.034
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 42 0.034
gb|BQ468809.1|BQ468809 HM02G14r HM Hordeum vulgare subsp. v... 42 0.034
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 42 0.034
gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. v... 42 0.034
gb|BQ664619.1|BQ664619 HV04C01u HV Hordeum vulgare subsp. v... 42 0.034
gb|BQ665870.1|BQ665870 HZ01G16u HZ Hordeum vulgare subsp. v... 42 0.034
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 42 0.034
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 42 0.034
gb|BM373611.2|BM373611 EBma03_SQ002_B19_R maternal, 8 DPA, ... 42 0.034
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 42 0.034
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 42 0.034
gb|BQ765160.1|BQ765160 EBca01_SQ005_P20_R carpel, pre-anthe... 42 0.034
gb|BQ765444.1|BQ765444 EBro03_SQ007_N05_R root, 3 week, wat... 42 0.034
gb|BU977219.1|BU977219 HA11A17u HA Hordeum vulgare subsp. v... 42 0.034
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 42 0.034
gb|BU994803.1|BU994803 HM08E02r HM Hordeum vulgare subsp. v... 42 0.034
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 42 0.034
gb|CA017032.1|CA017032 HV05B16u HV Hordeum vulgare subsp. v... 42 0.034
gb|CA022424.1|CA022424 HZ43C05r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. v... 42 0.034
gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. v... 42 0.034
gb|CB880925.1|CB880925 HM08E02w HM Hordeum vulgare subsp. v... 42 0.034
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 605 bits (305), Expect = e-171
Identities = 476/533 (89%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||
Sbjct: 71 tctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcatcgac 130
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||||
Sbjct: 131 ctcctcacggccgacggcgtcatctaccacaagacctgcttcaaatgcagccactgcaaa 190
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct: 191 gggatcctctcgatgtgcagctattcttccatggacggtgtcctctactgcaagacgcac 250
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaag 310
||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||| |||
Sbjct: 251 ttcgagcagctcttcaaggagacagggagcttctcaaagaagttcacaccgggtaacaaa 310
Query: 311 tcttcagacaagggtgaactgacaagggcccccagcaagctatcatctgcgttttctggt 370
||| |||||| ||||||||||||||||||| ||||||||||| |||| || || |||
Sbjct: 311 tctggcgacaagagtgaactgacaagggccccaagcaagctatccgctgccttctccggt 370
Query: 371 actcaggataagtgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctg 430
|||||||||||||||||||| ||| |||||||||||| || || || ||| ||||||||
Sbjct: 371 actcaggataagtgtgcagcctgcacgaaaacagtgtatccactcgaaaagatgactctg 430
Query: 431 gaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctcacc 490
|| ||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 431 gagggcgatgcataccacaagagctgcttcaagtgctcccacgggggctgcatcctaacc 490
Query: 491 acctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctg 550
||||||||||| ||||| ||||||||||| |||||||||||||||| |||| ||| |||
Sbjct: 491 acctcctcctatgccgccctcaacggcgtcttgtactgcaagatccatttcgggcaactg 550
Query: 551 ttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
|||||||||| || |||||||||||||||| |||||||||||| || |||||
Sbjct: 551 ttcatggagagaggaagctacagccacatgaagaagaagagcccctcgcagga 603
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 476 bits (240), Expect = e-133
Identities = 372/416 (89%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||
Sbjct: 73 tctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcatcgac 132
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||||
Sbjct: 133 ctcctcacggccgacggcgtcatctaccacaagacctgcttcaaatgcagccactgcaaa 192
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct: 193 gggatcctctcgatgtgcagctattcttccatggacggtgtcctctactgcaagacgcac 252
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaag 310
||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||| |||
Sbjct: 253 ttcgagcagctcttcaaggagacagggagcttctcaaagaagttcacaccgggtaacaaa 312
Query: 311 tcttcagacaagggtgaactgacaagggcccccagcaagctatcatctgcgttttctggt 370
||| |||||| ||||||||||||||||||| ||||||||||| |||| || || |||
Sbjct: 313 tctggcgacaagagtgaactgacaagggccccaagcaagctatccgctgccttctccggt 372
Query: 371 actcaggataagtgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctg 430
||||| |||||||||||||| ||| |||||||||||| || || || ||| ||||||||
Sbjct: 373 actcaagataagtgtgcagcctgcacgaaaacagtgtatccactcgaaaagatgactctg 432
Query: 431 gaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcct 486
|| ||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 gagggcgatgcataccacaagagctgcttcaagtgctcccacgggggctgcatcct 488
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 315 bits (159), Expect = 2e-084
Identities = 219/239 (91%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 114 tctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccacttcatcgac 173
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 174 ctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaag 233
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
|||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||||
Sbjct: 234 gggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaagacccat 293
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaa 309
||||| || |||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 294 ttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccaggtggcaa 352
Score = 153 bits (77), Expect = 1e-035
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
|||||| | |||||||| || ||||| ||||||||||| ||||| || || || |||||
Sbjct: 384 agcaagatgtcatctgccttctctggaactcaggataaatgtgcggcctgtcaaaaaacc 443
Query: 404 gtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttcaag 463
|||||||| |||||||| | | |||| || || | |||||||||| |||||||||||
Sbjct: 444 gtgtacccattggagaagctatccttggagggagaatgctaccacaagggctgcttcaag 503
Query: 464 tgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctg 523
|||||||| || ||||||||||| || |||||||| ||||| ||||||||||| | ||
Sbjct: 504 tgctcgcatggtggctgcatcctgacgacctcctcgtacgctgcgctcaacggaatcctc 563
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
|||||||||||||| ||| | |||||||||| ||||||||| |||||||
Sbjct: 564 tactgcaagatccatttctcacagctgttcaaggagaagggaagctaca 612
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 315 bits (159), Expect = 2e-084
Identities = 219/239 (91%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 120 tctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccacttcatcgac 179
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 180 ctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaag 239
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
|||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||||
Sbjct: 240 gggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaagacccat 299
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaa 309
||||| || |||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 300 ttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccaggtggcaa 358
Score = 137 bits (69), Expect = 8e-031
Identities = 189/229 (82%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
|||||| | |||||||| || ||||| ||||||||||| ||||| || || || |||||
Sbjct: 390 agcaagatgtcatctgccttctctggaactcaggataaatgtgcggcctgtcaaaaaacc 449
Query: 404 gtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttcaag 463
|||||||| |||||||| | | |||| || || | |||||||||| |||||||||||
Sbjct: 450 gtgtacccattggagaagctatccttggagggagaatgctaccacaagggctgcttcaag 509
Query: 464 tgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctg 523
|||||||| || ||||||||||| || |||||||| ||||| ||||||||||| | ||
Sbjct: 510 tgctcgcatggtggctgcatcctgacgacctcctcgtacgctgcgctcaacggaatcctc 569
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||| ||||||| ||| | |||||||||| ||||||||| |||||||
Sbjct: 570 tactggcagatccatttctcacagctgttcaaggagaagggaagctaca 618
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 315 bits (159), Expect = 2e-084
Identities = 219/239 (91%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 123 tctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccacttcatcgac 182
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 183 ctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaag 242
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
|||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||||
Sbjct: 243 gggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaagacccat 302
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaa 309
||||| || |||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 303 ttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccaggtggcaa 361
Score = 113 bits (57), Expect = 1e-023
Identities = 144/173 (83%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
|||||| | |||||||| || ||||| ||||||||||| ||||| || || || |||||
Sbjct: 393 agcaagatgtcatctgccttctctggaactcaggataaatgtgcggcctgtcaaaaaacc 452
Query: 404 gtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttcaag 463
|||||||| |||||||| | | |||| || || | |||||||||| |||||||||||
Sbjct: 453 gtgtacccattggagaagctatccttggagggagaatgctaccacaagggctgcttcaag 512
Query: 464 tgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacgg 516
|||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 513 tgctcgcatggtggctgcatcctgacgacctcctcgtacgctgcgctcaacgg 565
>gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_A02 5', mRNA sequence
Length = 483
Score = 139 bits (70), Expect = 2e-031
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 478 ctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatcca 537
||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 82 ctgcatcctaaccacctcctcctatgccgccctcaacggcgtcttgtactgcaagatcca 141
Query: 538 cttcgcgcagctgttcatggagaaggggagctacagccacatgatgaagaagagcccgtc 597
|||| ||| ||||||||||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 142 tttcgggcaactgttcatggagagaggaagctacagccacatgaagaagaagagcccctc 201
Query: 598 ccagga 603
|||||
Sbjct: 202 gcagga 207
Score = 113 bits (57), Expect = 1e-023
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 85 gcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctcctcacggccga 144
||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1 gcaggacaagtgctcggcgtgcgaaaagacggtccacttcatcgacctcctcacggccga 60
Query: 145 cggcgtcacctaccataagac 165
|||||||| |||||| |||||
Sbjct: 61 cggcgtcatctaccacaagac 81
>gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I23 5', mRNA sequence
Length = 284
Score = 85.7 bits (43), Expect = 3e-015
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 108 acaagaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacat 167
|||||||||| || ||||| ||||||||||| ||||| |||| ||||||| ||| |
Sbjct: 89 acaagaccgttcatttcattgacctcctcactgccgatagcgttccctaccacaagtatt 148
Query: 168 gcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatggacg 227
||||||| |||||||| |||||| | | || || |||||||||||||| |||||||| |
Sbjct: 149 gcttcaaatgcagccattgcaaaagcactctttcaatgtgcagctactcctccatggatg 208
Query: 228 gtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
| || || | ||||||||| || || |||||||| ||||||||
Sbjct: 209 gagttcttttctgcaagactcattttgagcagcttttcaagga 251
>gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08A11V 5', mRNA sequence
Length = 689
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 197 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 242
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 197 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 245
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 500 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 548
>gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D21V 5', mRNA sequence
Length = 470
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 226 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 271
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 226 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 274
>gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010G24f, mRNA sequence
Length = 517
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 186 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 231
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 186 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 234
>gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021J24f, mRNA sequence
Length = 865
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 268 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 313
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 268 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 316
Score = 40.1 bits (20), Expect = 0.14
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctac 571
||||||||| ||| ||| | ||||| |||| ||||||||||||||||
Sbjct: 571 tactgcaagccccatttctcacagcttttcagggagaaggggagctac 618
>gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E03f, mRNA sequence
Length = 652
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 76 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 121
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 76 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 124
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 379 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 427
>gb|BF616370.3|BF616370 HVSMEc0007A02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007A02f, mRNA sequence
Length = 600
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 441 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 486
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 441 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 489
>gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c07 5', mRNA sequence
Length = 733
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 380 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 425
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 380 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 428
>gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 5', mRNA sequence
Length = 604
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 210 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 255
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 210 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 258
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 513 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 561
>gb|BJ466489.1|BJ466489 BJ466489 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 3', mRNA sequence
Length = 619
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 606 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 561
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 606 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 558
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 303 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 255
>gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33a06 3', mRNA sequence
Length = 688
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 621 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 576
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 621 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 573
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 318 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 270
>gb|BJ476665.1|BJ476665 BJ476665 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36f06 3', mRNA sequence
Length = 620
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 605 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 560
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 605 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 557
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 302 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 254
>gb|BQ460921.1|BQ460921 HE01M06r HE Hordeum vulgare subsp. vulgare cDNA clone HE01M06
5-PRIME, mRNA sequence
Length = 510
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 373 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 418
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 373 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 421
>gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01G16
5-PRIME, mRNA sequence
Length = 509
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 256 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 301
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 256 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 304
>gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_D11 5', mRNA sequence
Length = 625
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 339 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 384
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 339 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 387
>gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D10 5', mRNA sequence
Length = 512
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 181 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 226
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 181 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 229
>gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_N12 5', mRNA sequence
Length = 581
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 107 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 152
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 107 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 155
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 410 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 458
>gb|BQ764551.1|BQ764551 EBca01_SQ004_O06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_O06 5', mRNA sequence
Length = 646
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 14 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 59
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 14 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 62
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 317 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 365
>gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_N18 5', mRNA sequence
Length = 716
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 283
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 286
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 541 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 589
>gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A17
5-PRIME, mRNA sequence
Length = 558
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 349 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 394
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 349 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 397
>gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA26G16
5-PRIME, mRNA sequence
Length = 417
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 236 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 281
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 236 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 284
>gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H14
5-PRIME, mRNA sequence
Length = 558
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 309 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 354
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 309 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 357
>gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. vulgare cDNA clone HI15I03
5-PRIME, mRNA sequence
Length = 543
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 308 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 353
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 308 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 356
>gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B16
5-PRIME, mRNA sequence
Length = 500
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 326 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 371
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 326 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 374
>gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D05
5-PRIME, mRNA sequence
Length = 587
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 217 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 262
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 217 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 265
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 520 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 568
>gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61H10
5-PRIME, mRNA sequence
Length = 556
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 347 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 392
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 347 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 395
>gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. vulgare cDNA clone HX12K14
5-PRIME, mRNA sequence
Length = 666
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 370 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 415
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 370 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 418
>gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N215 5-PRIME, mRNA sequence
Length = 823
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 283
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 286
Score = 40.1 bits (20), Expect = 0.14
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctac 571
||||||||| ||| ||| | ||||| |||| ||||||||||||||||
Sbjct: 541 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctac 588
>gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B069 5-PRIME, mRNA sequence
Length = 782
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 246 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 291
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| ||||||||||
Sbjct: 246 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagctaca 294
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 549 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 597
>gb|CA003910.1|CA003910 HS15O21r HS Hordeum vulgare subsp. vulgare cDNA clone HS15O21
5-PRIME, mRNA sequence
Length = 451
Score = 54.0 bits (27), Expect = 9e-006
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||| |||||| ||||||||||||| |||||
Sbjct: 341 tactgcaagccccatttcgcgcagctgttcaaggagaccgngagct 386
Score = 44.1 bits (22), Expect = 0.009
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| |||||||||||||||| ||||| | ||||||||
Sbjct: 341 tactgcaagccccatttcgcgcagctgttcaaggagaccgngagctaca 389
>gb|BI776278.2|BI776278 EBem04_SQ001_F10_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F10 5', mRNA sequence
Length = 662
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||| ||| |||| |||| |||||| |||||||||||||||||||
Sbjct: 30 tactggaagccccatttcgcgcagctgttcaaggagaccgggagct 75
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 539 ttcgcgcagctgttcatggagaaggggagctaca 572
|||||||||||||||| ||||| ||||||||||
Sbjct: 45 ttcgcgcagctgttcaaggagaccgggagctaca 78
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 333 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 381
>gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_O19 5', mRNA sequence
Length = 452
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| ||| |||||| |||||||||||||||||||
Sbjct: 256 tactgcaagccccatttcccgcagctgttcaaggagaccgggagct 301
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| |||||||||||| ||||| ||||||||||
Sbjct: 256 tactgcaagccccatttcccgcagctgttcaaggagaccgggagctaca 304
>gb|BJ460376.1|BJ460376 BJ460376 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40j17 3', mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 251 ttcgagcagctcttcaaggagaccgggagct 281
|||| |||||| |||||||||||||||||||
Sbjct: 589 ttcgcgcagctgttcaaggagaccgggagct 559
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 539 ttcgcgcagctgttcatggagaaggggagctaca 572
|||||||||||||||| ||||| ||||||||||
Sbjct: 589 ttcgcgcagctgttcaaggagaccgggagctaca 556
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 301 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 253
>gb|AL502569.1|AL502569 AL502569 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08A11u 3', mRNA sequence
Length = 694
Score = 44.1 bits (22), Expect = 0.009
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagcca 576
||||||||| ||| ||| | ||||| |||| ||||||||||||||||| |||
Sbjct: 420 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctacancca 368
>gb|AL502947.1|AL502947 AL502947 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D21u 3', mRNA sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 423 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 375
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 435 taccacaagagctgcttcaaatgct 459
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 559 taccacaagagctgcttcaaatgct 583
>gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 5', mRNA sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 284 taccacaagagctgcttcaaatgct 308
>gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 5', mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 285 taccacaagagctgcttcaaatgct 309
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 366 taccacaagagctgcttcaaatgct 342
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgct 467
|||||||||||||||||||| ||||
Sbjct: 376 taccacaagagctgcttcaaatgct 352
>gb|AV931773.1|AV931773 AV931773 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c07 3', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.034
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 246 cccacttcgagcagctcttcaaggagaccgggagct 281
|||| |||| |||||| |||||||||||||| ||||
Sbjct: 656 cccatttcgcgcagctgttcaaggagaccggnagct 621
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 363 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 315
>gb|BM817001.1|BM817001 HC05E10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC05E10_T3.ab1 similar to (AF116851) LIM domain protein
PLIM-2 [Nicotiana tabacum], mRNA sequence
Length = 839
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 200 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 248
>gb|AJ432815.1|AJ432815 AJ432815 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019H05F1, mRNA sequence
Length = 300
Score = 42.1 bits (21), Expect = 0.034
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 524 tactgcaagatccacttcgcgcagctgttcatggagaaggggagctaca 572
||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct: 134 tactgcaagcaccatttctcacagcttttcaaggagaaggggagctaca 182
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,031
Number of Sequences: 312970
Number of extensions: 115031
Number of successful extensions: 34589
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34328
Number of HSP's gapped (non-prelim): 253
length of query: 993
length of database: 175,134,539
effective HSP length: 19
effective length of query: 974
effective length of database: 169,188,109
effective search space: 164789218166
effective search space used: 164789218166
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)