BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3713074.2.1
         (527 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU996805.1|BU996805  HM14N04r HM Hordeum vulgare subsp. v...   127   4e-028
gb|CB874756.1|CB874756  HX06D16w HX Hordeum vulgare subsp. v...    56   1e-006
gb|CB875233.1|CB875233  HX07K22w HX Hordeum vulgare subsp. v...    56   1e-006
gb|BJ451080.1|BJ451080  BJ451080 K. Sato unpublished cDNA li...    48   3e-004

>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
           5-PRIME, mRNA sequence
          Length = 612

 Score =  127 bits (64), Expect = 4e-028
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                       
Query: 31  atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
           ||||||||||||||||| |||||||||||| | || | ||||||| ||  ||||||||||
Sbjct: 311 atctgccacccaacagagtttgatttcttcctctgtagccatgctgggatcaagggaaca 370

                                                                       
Query: 91  agccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcagatgctctg 150
           ||||||||| |||||||||| ||||| |||||||||||||| ||||  || ||||  |||
Sbjct: 371 agccgtcctgcgcattaccacgtgctgcgagatgacaacaacttcagtgctgatgacctg 430

                                       
Query: 151 cagtctctaacatataacttgtgctaca 178
           |||||||| ||| | ||| |||||||||
Sbjct: 431 cagtctcttacaaacaacctgtgctaca 458



>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
           3-PRIME, mRNA sequence
          Length = 635

 Score = 56.0 bits (28), Expect = 1e-006
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                       
Query: 83  agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
           ||||||||||||||||| | ||||| || || ||| | ||||| ||||||||||| || |
Sbjct: 518 agggaacaagccgtcctgctcattatcacgtactatgggatgagaacaagttcactgctg 459

                                               
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
           |||   ||||  |||||||| | |||||||||||||
Sbjct: 458 atgagttgcaaactctaacaaacaacttgtgctaca 423



>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
           3-PRIME, mRNA sequence
          Length = 603

 Score = 56.0 bits (28), Expect = 1e-006
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                       
Query: 83  agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
           ||||||||||||||||| | ||||| || || ||| | ||||| ||||||||||| || |
Sbjct: 585 agggaacaagccgtcctgctcattatcacgtactatgggatgagaacaagttcactgctg 526

                                               
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
           |||   ||||  |||||||| | |||||||||||||
Sbjct: 525 atgagttgcaaactctaacaaacaacttgtgctaca 490



>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak32j21 5', mRNA sequence
          Length = 576

 Score = 48.1 bits (24), Expect = 3e-004
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                       
Query: 83  agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
           ||||||||||||| ||| ||||||||||||| ||  | ||||| ||||| || ||||| |
Sbjct: 281 agggaacaagccgccctgcgcattaccatgtcctttgggatgagaacaattttaccgcgg 340

                           
Query: 143 atgctctgcagtctct 158
           ||| | ||||| ||||
Sbjct: 341 atggtttgcagactct 356



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,769
Number of Sequences: 312970
Number of extensions: 37769
Number of successful extensions: 9531
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9527
Number of HSP's gapped (non-prelim): 4
length of query: 527
length of database: 175,134,539
effective HSP length: 18
effective length of query: 509
effective length of database: 169,501,079
effective search space: 86276049211
effective search space used: 86276049211
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)