BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713002.2.1
(923 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D... 567 e-160
emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucana... 567 e-160
gb|AV925542.1|AV925542 AV925542 K. Sato unpublished cDNA li... 559 e-158
gb|AV926710.1|AV926710 AV926710 K. Sato unpublished cDNA li... 559 e-158
gb|BQ465340.1|BQ465340 HU03F15r HU Hordeum vulgare subsp. v... 559 e-158
gb|CA018533.1|CA018533 HV08O12r HV Hordeum vulgare subsp. v... 559 e-158
emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanas... 559 e-158
gb|CB877858.1|CB877858 HP06G23T HP Hordeum vulgare subsp. v... 474 e-132
gb|BI950595.1|BI950595 HVSMEl0021J13f Hordeum vulgare spike... 470 e-131
gb|BF253425.2|BF253425 HVSMEf0001G05f Hordeum vulgare seedl... 464 e-129
gb|CB884203.1|CB884203 HV10H06u HV Hordeum vulgare subsp. v... 462 e-128
gb|BJ546633.1|BJ546633 BJ546633 K. Sato unpublished cDNA li... 440 e-122
gb|BJ545156.1|BJ545156 BJ545156 K. Sato unpublished cDNA li... 424 e-117
gb|BI950008.1|BI950008 HVSMEl0017K22f Hordeum vulgare spike... 406 e-112
gb|BI950007.1|BI950007 HVSMEl0017K20f Hordeum vulgare spike... 398 e-109
gb|CB884213.1|CB884213 HV14A09u HV Hordeum vulgare subsp. v... 396 e-109
gb|BF258566.3|BF258566 HVSMEf0016B09f Hordeum vulgare seedl... 391 e-107
gb|CK125397.1|CK125397 BES1824107o07 BES1824 Hordeum vulgar... 391 e-107
gb|AV927218.1|AV927218 AV927218 K. Sato unpublished cDNA li... 387 e-106
gb|AV923914.1|AV923914 AV923914 K. Sato unpublished cDNA li... 369 e-100
gb|AV923570.1|AV923570 AV923570 K. Sato unpublished cDNA li... 355 2e-096
gb|AV928494.1|AV928494 AV928494 K. Sato unpublished cDNA li... 355 2e-096
gb|DW474925.1|DW474925 1-n92 Subtracted libraries from epid... 353 7e-096
gb|CB884195.1|CB884195 HV09B24r HV Hordeum vulgare subsp. v... 347 4e-094
gb|BG415255.2|BG415255 HVSMEk0005L24f Hordeum vulgare testa... 341 2e-092
gb|AV927361.1|AV927361 AV927361 K. Sato unpublished cDNA li... 327 4e-088
gb|BJ545434.1|BJ545434 BJ545434 K. Sato unpublished cDNA li... 327 4e-088
gb|CB879399.1|CB879399 HP02B03w HP Hordeum vulgare subsp. v... 325 1e-087
gb|BI947339.1|BI947339 HVSMEl0005D01f Hordeum vulgare spike... 321 2e-086
gb|AV929134.1|AV929134 AV929134 K. Sato unpublished cDNA li... 319 9e-086
gb|AV930490.1|AV930490 AV930490 K. Sato unpublished cDNA li... 319 9e-086
gb|BQ661884.1|BQ661884 HP01K19w HP Hordeum vulgare subsp. v... 319 9e-086
gb|BJ548188.1|BJ548188 BJ548188 K. Sato unpublished cDNA li... 319 9e-086
gb|CB884196.1|CB884196 HV09B24u HV Hordeum vulgare subsp. v... 319 9e-086
gb|CB884210.1|CB884210 HV12O06u HV Hordeum vulgare subsp. v... 319 9e-086
gb|BQ664638.1|BQ664638 HV04D23u HV Hordeum vulgare subsp. v... 315 1e-084
gb|AV928013.1|AV928013 AV928013 K. Sato unpublished cDNA li... 313 6e-084
gb|BJ543926.1|BJ543926 BJ543926 K. Sato unpublished cDNA li... 307 3e-082
gb|CD663219.1|CD663219 UCRHV18_04da12_b1 Drought-stressed D... 307 3e-082
gb|AV928558.1|AV928558 AV928558 K. Sato unpublished cDNA li... 305 1e-081
gb|BE421550.1|BE421550 HWM010.E03 ITEC HWM Barley Leaf Libr... 295 1e-078
gb|AV931924.1|AV931924 AV931924 K. Sato unpublished cDNA li... 295 1e-078
gb|BQ464233.1|BQ464233 HF01L09T HF Hordeum vulgare subsp. v... 295 1e-078
gb|BQ661780.1|BQ661780 HP01E06w HP Hordeum vulgare subsp. v... 295 1e-078
gb|BJ547063.1|BJ547063 BJ547063 K. Sato unpublished cDNA li... 295 1e-078
gb|BQ468175.1|BQ468175 HP01E06T HP Hordeum vulgare subsp. v... 293 5e-078
gb|AV928246.1|AV928246 AV928246 K. Sato unpublished cDNA li... 291 2e-077
gb|BG310053.1|BG310053 HVSMEc0016D10f Hordeum vulgare seedl... 287 3e-076
gb|BE421248.1|BE421248 HWM007.D01 ITEC HWM Barley Leaf Libr... 285 1e-075
gb|BF265541.2|BF265541 HV_CEa0012I19f Hordeum vulgare seedl... 283 5e-075
gb|BF257633.2|BF257633 HVSMEf0013G15f Hordeum vulgare seedl... 281 2e-074
gb|AV930079.1|AV930079 AV930079 K. Sato unpublished cDNA li... 281 2e-074
gb|BE420625.1|BE420625 HWM000.H02 ITEC HWM Barley Leaf Libr... 280 8e-074
gb|CA016370.1|CA016370 HV09A23u HV Hordeum vulgare subsp. v... 280 8e-074
gb|CA017223.1|CA017223 HV14D06u HV Hordeum vulgare subsp. v... 280 8e-074
gb|BI953200.1|BI953200 HVSMEm0011J22f Hordeum vulgare green... 270 8e-071
gb|BQ659785.1|BQ659785 HF01L09w HF Hordeum vulgare subsp. v... 268 3e-070
gb|BE421306.1|BE421306 HWM007.H11 ITEC HWM Barley Leaf Libr... 264 5e-069
gb|BQ664073.1|BQ664073 HV01J14w HV Hordeum vulgare subsp. v... 262 2e-068
gb|BQ663609.1|BQ663609 HU03F15u HU Hordeum vulgare subsp. v... 256 1e-066
gb|CA016459.1|CA016459 HV08O12u HV Hordeum vulgare subsp. v... 256 1e-066
gb|CD662956.1|CD662956 UCRHV18_03db04_b1 Drought-stressed D... 248 3e-064
gb|BF254405.2|BF254405 HVSMEf0003O17f Hordeum vulgare seedl... 224 4e-057
gb|CA017203.1|CA017203 HV14G01u HV Hordeum vulgare subsp. v... 224 4e-057
gb|CD663748.1|CD663748 UCRHV18_06ca11_b1 Drought-stressed D... 218 2e-055
gb|CB879831.1|CB879831 HP03O01w HP Hordeum vulgare subsp. v... 202 1e-050
gb|BE438180.1|BE438180 SFR009.B07F990722 ITEC SFR Barley Le... 194 4e-048
gb|BJ546757.1|BJ546757 BJ546757 K. Sato unpublished cDNA li... 188 2e-046
gb|CB879174.1|CB879174 HP11D02T HP Hordeum vulgare subsp. v... 182 1e-044
gb|BF261425.2|BF261425 HV_CEa0001E01f Hordeum vulgare seedl... 180 5e-044
gb|BJ544200.1|BJ544200 BJ544200 K. Sato unpublished cDNA li... 172 1e-041
gb|AV926867.1|AV926867 AV926867 K. Sato unpublished cDNA li... 149 2e-034
gb|BI952980.1|BI952980 HVSMEm0008N09f Hordeum vulgare green... 143 1e-032
gb|CD662424.1|CD662424 UCRHV18_02ae08_b1 Drought-stressed D... 135 3e-030
gb|BG309932.1|BG309932 HVSMEc0015D06f Hordeum vulgare seedl... 133 1e-029
gb|AV924286.1|AV924286 AV924286 K. Sato unpublished cDNA li... 133 1e-029
gb|AV924287.1|AV924287 AV924287 K. Sato unpublished cDNA li... 133 1e-029
gb|AV924301.1|AV924301 AV924301 K. Sato unpublished cDNA li... 133 1e-029
gb|AV929381.1|AV929381 AV929381 K. Sato unpublished cDNA li... 133 1e-029
gb|AV929382.1|AV929382 AV929382 K. Sato unpublished cDNA li... 133 1e-029
gb|BQ664447.1|BQ664447 HV03E24u HV Hordeum vulgare subsp. v... 133 1e-029
gb|CD663600.1|CD663600 UCRHV18_06ab02_b1 Drought-stressed D... 125 3e-027
gb|CB884202.1|CB884202 HV10H06r HV Hordeum vulgare subsp. v... 123 1e-026
gb|BE437889.1|BE437889 SFR008.E12F990510 ITEC SFR Barley Le... 121 4e-026
gb|CD663936.1|CD663936 UCRHV18_07af06_b1 Drought-stressed D... 119 2e-025
gb|BI950097.1|BI950097 HVSMEl0018J20f Hordeum vulgare spike... 109 2e-022
gb|BF254287.1|BF254287 HVSMEf0003I20f Hordeum vulgare seedl... 103 1e-020
gb|CA016324.1|CA016324 HV09F21u HV Hordeum vulgare subsp. v... 98 6e-019
gb|BJ548398.1|BJ548398 BJ548398 K. Sato unpublished cDNA li... 94 1e-017
gb|BJ546564.1|BJ546564 BJ546564 K. Sato unpublished cDNA li... 90 2e-016
gb|AV928500.1|AV928500 AV928500 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ449157.1|BJ449157 BJ449157 K. Sato unpublished cDNA li... 74 9e-012
gb|BJ456617.1|BJ456617 BJ456617 K. Sato unpublished cDNA li... 74 9e-012
gb|BI778443.2|BI778443 EBro07_SQ003_F04_R root, 3 week, red... 70 1e-010
gb|AL509694.1|AL509694 AL509694 Hordeum vulgare Barke devel... 54 8e-006
gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke devel... 54 8e-006
gb|BE601595.2|BE601595 HVSMEh0098M24f Hordeum vulgare 5-45 ... 54 8e-006
gb|BF064576.1|BF064576 HV_CEb0015P01f Hordeum vulgare seedl... 54 8e-006
gb|BF264980.2|BF264980 HV_CEa0010O18f Hordeum vulgare seedl... 54 8e-006
gb|BM443712.1|BM443712 EBem09_SQ001_E03_R embryo, 1 Day ger... 54 8e-006
gb|BM444766.1|BM444766 EBem09_SQ006_G13_R embryo, 1 Day ger... 54 8e-006
gb|BJ447497.1|BJ447497 BJ447497 K. Sato unpublished cDNA li... 54 8e-006
gb|BJ455256.1|BJ455256 BJ455256 K. Sato unpublished cDNA li... 54 8e-006
gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, dro... 54 8e-006
gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. v... 54 8e-006
gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. v... 54 8e-006
gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. v... 54 8e-006
gb|CK125687.1|CK125687 BES1824110a22 BES1824 Hordeum vulgar... 54 8e-006
gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanas... 54 8e-006
emb|AJ271367.1|HVU271367 Hordeum vulgare mRNA for beta-1,3-... 54 8e-006
gb|AF515785.1| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 54 8e-006
gb|AF479647.2| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 54 8e-006
gb|AV909148.1|AV909148 AV909148 K. Sato unpublished cDNA li... 52 3e-005
gb|AV911030.1|AV911030 AV911030 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ449523.1|BJ449523 BJ449523 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ450676.1|BJ450676 BJ450676 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ452679.1|BJ452679 BJ452679 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ452749.1|BJ452749 BJ452749 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ453971.1|BJ453971 BJ453971 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ456958.1|BJ456958 BJ456958 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ458099.1|BJ458099 BJ458099 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ460231.1|BJ460231 BJ460231 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ460297.1|BJ460297 BJ460297 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ461506.1|BJ461506 BJ461506 K. Sato unpublished cDNA li... 52 3e-005
gb|BI778131.2|BI778131 EBro07_SQ002_F02_R root, 3 week, red... 52 3e-005
gb|CB879078.1|CB879078 HP10O03T HP Hordeum vulgare subsp. v... 52 3e-005
gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedl... 50 1e-004
gb|BG415032.1|BG415032 HVSMEk0004M09f Hordeum vulgare testa... 50 1e-004
gb|BG416675.1|BG416675 HVSMEk0014B06f Hordeum vulgare testa... 50 1e-004
gb|AV925316.1|AV925316 AV925316 K. Sato unpublished cDNA li... 50 1e-004
gb|AV925324.1|AV925324 AV925324 K. Sato unpublished cDNA li... 50 1e-004
gb|BM816843.1|BM816843 HC03E07_T3.ab1 HC Hordeum vulgare su... 50 1e-004
gb|BJ450923.1|BJ450923 BJ450923 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ454422.1|BJ454422 BJ454422 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ462228.1|BJ462228 BJ462228 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ468211.1|BQ468211 HP01G14T HP Hordeum vulgare subsp. v... 50 1e-004
gb|BU974668.1|BU974668 HB28L10r BC Hordeum vulgare subsp. v... 50 1e-004
gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. v... 50 1e-004
gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. v... 50 1e-004
gb|CK124709.1|CK124709 BES1824110b24 BES1824 Hordeum vulgar... 50 1e-004
gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-... 50 1e-004
gb|AY239039.1| Hordeum vulgare subsp. vulgare clone SMEm002... 50 1e-004
gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedl... 44 0.008
gb|BI957130.1|BI957130 HVSMEn0007K04f Hordeum vulgare rachi... 44 0.008
gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedl... 44 0.008
gb|BQ766640.1|BQ766640 EBro08_SQ006_O15_R root, 3 week, dro... 44 0.008
gb|BQ766726.1|BQ766726 EBro08_SQ006_O23_R root, 3 week, dro... 44 0.008
gb|BQ768478.1|BQ768478 EBro08_SQ011_G22_R root, 3 week, dro... 44 0.008
gb|M96939.1|BLYGLCNHV Hordeum vulgare glucan endo-1,3-beta-... 44 0.008
gb|AL504555.1|AL504555 AL504555 Hordeum vulgare Barke roots... 42 0.032
gb|BF256955.3|BF256955 HVSMEf0011H13f Hordeum vulgare seedl... 42 0.032
gb|AY239038.1| Hordeum vulgare subsp. vulgare clone CEa0006... 42 0.032
gb|BF624630.2|BF624630 HVSMEa0017F02f Hordeum vulgare seedl... 40 0.13
gb|BG415029.1|BG415029 HVSMEk0004M05f Hordeum vulgare testa... 40 0.13
gb|BE519918.3|BE519918 HV_CEb0021L03f Hordeum vulgare seedl... 40 0.13
gb|BQ765468.1|BQ765468 EBro03_SQ007_C08_R root, 3 week, wat... 40 0.13
gb|BF265292.2|BF265292 HV_CEa0011J05f Hordeum vulgare seedl... 38 0.50
gb|BG417407.2|BG417407 HVSMEk0017D17f Hordeum vulgare testa... 38 0.50
gb|BQ469894.1|BQ469894 HX01C20T HX Hordeum vulgare subsp. v... 38 0.50
gb|BU986824.1|BU986824 HF13A05r HF Hordeum vulgare subsp. v... 38 0.50
gb|CA017497.1|CA017497 HV05G05r HV Hordeum vulgare subsp. v... 38 0.50
gb|CA030706.1|CA030706 HX07O01r HX Hordeum vulgare subsp. v... 38 0.50
>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
Length = 4849
Score = 567 bits (286), Expect = e-160
Identities = 406/446 (91%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4019 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 4078
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 4079 cgagcgccatggacatgagctacgcgctcttcaccgcctccggcaccgtggtccaggacg 4138
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 4139 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 4198
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 4199 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 4258
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 4259 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 4318
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4319 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 4378
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4379 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 4438
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 4439 agcacgtctaccccatcagcttctga 4464
>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
Length = 4643
Score = 567 bits (286), Expect = e-160
Identities = 406/446 (91%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3619 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 3678
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 3679 cgagcgccatggacatgagctacgcgctcttcaccgcctccggcaccgtggtccaggacg 3738
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 3739 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 3798
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 3799 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 3858
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 3859 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 3918
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3919 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 3978
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 4038
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 4039 agcacgtctaccccatcagcttctga 4064
>gb|AV925542.1|AV925542 AV925542 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24m02 5', mRNA sequence
Length = 643
Score = 559 bits (282), Expect = e-158
Identities = 405/446 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 71 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 130
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 131 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 190
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 191 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 250
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 251 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 310
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 311 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 370
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 430
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 490
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 491 agcacgtctaccccatcagcttctga 516
>gb|AV926710.1|AV926710 AV926710 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h17 5', mRNA sequence
Length = 690
Score = 559 bits (282), Expect = e-158
Identities = 405/446 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 162 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 221
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 222 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 281
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 282 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 341
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 342 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 401
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 402 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 461
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 462 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 521
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 581
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 582 agcacgtctaccccatcagcttctga 607
>gb|BQ465340.1|BQ465340 HU03F15r HU Hordeum vulgare subsp. vulgare cDNA clone HU03F15
5-PRIME, mRNA sequence
Length = 626
Score = 559 bits (282), Expect = e-158
Identities = 405/446 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 106 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 165
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 166 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 225
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 226 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 285
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 286 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 345
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 346 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 405
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 465
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 525
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 526 agcacgtctaccccatcagcttctga 551
>gb|CA018533.1|CA018533 HV08O12r HV Hordeum vulgare subsp. vulgare cDNA clone HV08O12
5-PRIME, mRNA sequence
Length = 645
Score = 559 bits (282), Expect = e-158
Identities = 405/446 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 189 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 248
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 249 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 308
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 309 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 368
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 369 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 428
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 429 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 488
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 548
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 608
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 609 agcacgtctaccccatcagcttctga 634
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
Length = 6260
Score = 559 bits (282), Expect = e-158
Identities = 405/446 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5026 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 5085
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 5086 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 5145
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 5146 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 5205
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 5206 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 5265
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 5266 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 5325
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5326 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 5385
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 acgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgc 5445
Query: 421 agcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||
Sbjct: 5446 agcacgtctaccccatcagcttctga 5471
>gb|CB877858.1|CB877858 HP06G23T HP Hordeum vulgare subsp. vulgare cDNA clone HP06G23
5-PRIME, mRNA sequence
Length = 688
Score = 474 bits (239), Expect = e-132
Identities = 363/403 (90%), Gaps = 1/403 (0%)
Strand = Plus / Plus
Query: 44 ggcctgggcatacaaccccagcgccatggacatgagctacgcgctcttcacctcctccgg 103
||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct: 10 ggcctgggcctacaaccg-agcgccatggacatgagctacgcgctcttcaccgcgtccgg 68
Query: 104 caccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtcgacgc 163
|||||| || ||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 69 caccgtggtccaggacggctcctacgggtaccagaacctgttcgacaccaccgtggacgc 128
Query: 164 cttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagag 223
||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||||||||
Sbjct: 129 cttctacacggccatggccaagcacggcggctccaacgtgaagctggtggtgtccgagag 188
Query: 224 cgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaacca 283
|||||||||||| | ||||||| ||| || ||||||||||| ||| | ||||||||
Sbjct: 189 cgggtggccgtcagccggcggcacggcggcgaccccggccaacgccaggatctacaacca 248
Query: 284 gtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagaccta 343
||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct: 249 gtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagaccta 308
Query: 344 cctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggct 403
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 309 cgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcagaactgggggct 368
Query: 404 cttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttctaccccaacatgcagcacgtctaccccatcagcttctga 411
>gb|BI950595.1|BI950595 HVSMEl0021J13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021J13f, mRNA sequence
Length = 543
Score = 470 bits (237), Expect = e-131
Identities = 353/392 (90%)
Strand = Plus / Plus
Query: 55 acaaccccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgc 114
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| || |
Sbjct: 1 acaacccgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtcc 60
Query: 115 aggacggcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcg 174
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct: 61 aggacggctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacgg 120
Query: 175 ccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgt 234
|||||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 121 ccatggccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgt 180
Query: 235 ccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatca 294
| ||||||| ||| || ||||||||||| ||| | |||||||||||||||||||
Sbjct: 181 canccggcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatca 240
Query: 295 accacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctcca 354
|||||||||| ||||| || || ||||||||||||||||||||||||||| |||||||||
Sbjct: 241 accacgtcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctcca 300
Query: 355 tgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctacccca 414
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttcaacgagaaccagaaggacaacggcgtggagcagaactgggggctcttctacccca 360
Query: 415 acatgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||||||||
Sbjct: 361 acatgcagcacgtctaccccatcagcttctga 392
>gb|BF253425.2|BF253425 HVSMEf0001G05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001G05f, mRNA sequence
Length = 856
Score = 464 bits (234), Expect = e-129
Identities = 394/446 (88%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 100 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 159
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||| ||||||||||| | | ||||||||| || |||||||
Sbjct: 160 cgagcgccatggacatgagctacacgctcttcaccgcgtacggcaccgtggtccaggacg 219
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||
Sbjct: 220 gctcctacgggtaccagaacctgttcaacaccaccgtggacgccttctacacggccatgg 279
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| ||
Sbjct: 280 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcaaccg 339
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
|||| |||| || ||||||||||| || | |||||||||||||||||||||||||
Sbjct: 340 gcggaacggaggcgaccccggccaacgccagtatctacaaccagtacctcatcaaccacg 399
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || || |||||| ||||||||||||||||| |||||||||||||||
Sbjct: 400 tcgggcgcggcaccccccgtcacccgagcgccatcgagacctacgtcttctccatgttca 459
Query: 361 acgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgc 420
|||| ||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 460 acgataaccataaggacaacggcgtggagcagaactgggggctcttctacccc-acatgc 518
Query: 421 agcacgtctaccccatcagcttctga 446
| ||||||||||||||||||||||||
Sbjct: 519 atcacgtctaccccatcagcttctga 544
>gb|CB884203.1|CB884203 HV10H06u HV Hordeum vulgare subsp. vulgare cDNA clone HV10H06
3-PRIME, mRNA sequence
Length = 557
Score = 462 bits (233), Expect = e-128
Identities = 365/409 (89%)
Strand = Plus / Minus
Query: 38 gtacctggcctgggcatacaaccccagcgccatggacatgagctacgcgctcttcacctc 97
||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||| | |
Sbjct: 557 gtacctggcctgggcttacaacccgagcgccatggacatgggctacgctctcttcaacgc 498
Query: 98 ctccggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgt 157
||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 gtccggcaccgtggtcagggacggcgcctacgggtaccagaacctgttcgacaccaccgt 438
Query: 158 cgacgccttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtc 217
|||||||||||| |||||||| ||| ||||||||||| ||||| ||| ||||||||
Sbjct: 437 ggacgccttctacacggccatgggcaagcacggcggctccagcgtgaagctggtggtgtc 378
Query: 218 cgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgta 277
||||||||||||||||| ||||||||| ||| || ||||||||||| ||| | ||
Sbjct: 377 ggagagcgggtggccgtcgggcggcggcacggcggcgactccggccaacgctaggttcta 318
Query: 278 caaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcga 337
||||||| ||||||||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct: 317 caaccagcacctcatcaaccacgtcgggcgcggcaccccacgccacccgggcgccatcga 258
Query: 338 gacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactg 397
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 gacctacatcttcgccatgttcaacgagaaccagaaggacagcggcgtggagcagaactg 198
Query: 398 ggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 197 gggactcttctaccccaacatgcagcacgtctaccccatcaacttctga 149
>gb|BJ546633.1|BJ546633 BJ546633 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45b03 3', mRNA sequence
Length = 730
Score = 440 bits (222), Expect = e-122
Identities = 333/370 (90%)
Strand = Plus / Minus
Query: 77 gagctacgcgctcttcacctcctccggcaccgtcgtgcaggacggcgcctacgggtacca 136
||||||||||||||||||| | ||||||||||| || ||||||||| |||||||||||||
Sbjct: 730 gagctacgcgctcttcaccgcgtccggcaccgtggtccaggacggctcctacgggtacca 671
Query: 137 gaacctcttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggctc 196
|||||| |||||||||||||| |||||||||||| ||||||| ||| ||||||||||
Sbjct: 670 gaacctgttcgacaccaccgtggacgccttctacacggccatggccaagcacggcggctc 611
Query: 197 cggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccac 256
| |||| ||| |||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct: 610 caacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgac 551
Query: 257 gccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgcc 316
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 550 cccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcacccc 491
Query: 317 gcgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaagga 376
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 490 ccgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaagga 431
Query: 377 gagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccat 436
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccat 371
Query: 437 cagcttctga 446
||||||||||
Sbjct: 370 cagcttctga 361
>gb|BJ545156.1|BJ545156 BJ545156 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45b03 5', mRNA sequence
Length = 554
Score = 424 bits (214), Expect = e-117
Identities = 331/370 (89%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 244
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 245 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 304
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 305 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 364
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 365 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 424
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 425 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 484
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttca 360
|||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 tcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttca 544
Query: 361 acgagaacca 370
||||||||||
Sbjct: 545 acgagaacca 554
>gb|BI950008.1|BI950008 HVSMEl0017K22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017K22f, mRNA sequence
Length = 449
Score = 406 bits (205), Expect = e-112
Identities = 310/345 (89%)
Strand = Plus / Plus
Query: 102 ggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtcgac 161
|||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 1 ggcaccgtggtccaggacggctcctacgggtaccagaacctgttcgacaccaccgtggac 60
Query: 162 gccttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgag 221
||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||||||
Sbjct: 61 gccttctacacggccatggccaagcacggcggctccaacgtgaagctggtggtgtccgag 120
Query: 222 agcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaac 281
|||||||||||||| | ||||||| ||| || ||||||||||| ||| | ||||||
Sbjct: 121 agcgggtggccgtcagccggcggcacggcggcgaccccggccaacgccaggatctacaac 180
Query: 282 cagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacc 341
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct: 181 cagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagacc 240
Query: 342 tacctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactggggg 401
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 241 tacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcagaactggggg 300
Query: 402 ctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcttctaccccaacatgcagcacgtctaccccatcagcttctga 345
>gb|BI950007.1|BI950007 HVSMEl0017K20f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017K20f, mRNA sequence
Length = 449
Score = 398 bits (201), Expect = e-109
Identities = 309/345 (89%)
Strand = Plus / Plus
Query: 102 ggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtcgac 161
|||||||| || ||||||||| ||||||||||||||||||| ||| |||||||||| |||
Sbjct: 1 ggcaccgtggtccaggacggctcctacgggtaccagaacctgttctacaccaccgtggac 60
Query: 162 gccttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgag 221
||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||||||
Sbjct: 61 gccttctacacggccatggccaagcacggcggctccaacgtgaagctggtggtgtccgag 120
Query: 222 agcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaac 281
|||||||||||||| | ||||||| ||| || ||||||||||| ||| | ||||||
Sbjct: 121 agcgggtggccgtcagccggcggcacggcggcgaccccggccaacgccaggatctacaac 180
Query: 282 cagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacc 341
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct: 181 cagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagacc 240
Query: 342 tacctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactggggg 401
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 241 tacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcagaactggggg 300
Query: 402 ctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcttctaccccaacatgcagcacgtctaccccatcagcttctga 345
>gb|CB884213.1|CB884213 HV14A09u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A09
3-PRIME, mRNA sequence
Length = 556
Score = 396 bits (200), Expect = e-109
Identities = 311/348 (89%)
Strand = Plus / Minus
Query: 99 tccggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtc 158
||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 550 tccggcaccgtggtcagggacggcgcctacgggtaccagaacctgttcgacaccaccgtg 491
Query: 159 gacgccttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtcc 218
|||||||||||| |||||||| ||| ||||||||||| ||||| ||| ||||||||
Sbjct: 490 gacgccttctacacggccatgggcaagcacggcggctccagcgtgaagctggtggtgtcg 431
Query: 219 gagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgtac 278
||||||||||||||||| ||||||||| ||| || ||||||||||| ||| | |||
Sbjct: 430 gagagcgggtggccgtcgggcggcggcacggcggcgactccggccaacgctaggttctac 371
Query: 279 aaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcgag 338
|||||| ||||||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 370 aaccagcacctcatcaaccacgtcgggcgcggcaccccacgccacccgggcgccatcgag 311
Query: 339 acctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactgg 398
|||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 310 acctacatcttcgccatgttcaacgagaaccagaaggacagcggcgtggagcagaactgg 251
Query: 399 gggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 ggactcttctaccccaacatgcagcacgtctaccccatcaacttctga 203
>gb|BF258566.3|BF258566 HVSMEf0016B09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016B09f, mRNA sequence
Length = 773
Score = 391 bits (197), Expect = e-107
Identities = 323/365 (88%)
Strand = Plus / Plus
Query: 82 acgcgctcttcacctcctccggcaccgtcgtgcaggacggcgcctacgggtaccagaacc 141
|||||||||||||| | | ||||||||| || || |||||| ||||||||||||||||||
Sbjct: 1 acgcgctcttcaccgcgtacggcaccgtggtccatgacggctcctacgggtaccagaacc 60
Query: 142 tcttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggctccggcg 201
| |||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||
Sbjct: 61 tgttcgacaccaccgtggacgccttctacacggccatggacaagcacggcggctccaacg 120
Query: 202 tgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccgg 261
|| ||| |||||||||||||||||||||||||| ||||||| || || ||||
Sbjct: 121 tgaagctggtggtgtccgagagcgggtggccgtcaaccggcggcacggcggtgaccccgg 180
Query: 262 ccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgcc 321
||||||| ||| | ||||||||||||||||||||||||||||| ||||| || || ||||
Sbjct: 181 ccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgcc 240
Query: 322 acccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcg 381
||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||
Sbjct: 241 acccgggcgccatcgagacctacgtcttctgcatgttcaacgagaaccagaaggacaacg 300
Query: 382 gcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagct 360
Query: 442 tctga 446
|||||
Sbjct: 361 tctga 365
>gb|CK125397.1|CK125397 BES1824107o07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O077 5-PRIME, mRNA sequence
Length = 716
Score = 391 bits (197), Expect = e-107
Identities = 293/325 (90%)
Strand = Plus / Plus
Query: 122 cgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatggg 181
||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 15 cgcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatggc 74
Query: 182 aaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcgg 241
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | |||
Sbjct: 75 caagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccgg 134
Query: 242 cggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgt 301
|||| ||| || ||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 135 cggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgt 194
Query: 302 cggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaa 361
||| ||||| || || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 195 cgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttcaa 254
Query: 362 cgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgca 421
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgca 314
Query: 422 gcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||
Sbjct: 315 gcacgtctaccccatcagcttctga 339
>gb|AV927218.1|AV927218 AV927218 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a02 3', mRNA sequence
Length = 691
Score = 387 bits (195), Expect = e-106
Identities = 291/323 (90%)
Strand = Plus / Minus
Query: 124 cctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgggaa 183
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |
Sbjct: 689 cctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatggcca 630
Query: 184 agaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcg 243
|| ||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||
Sbjct: 629 agcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcg 570
Query: 244 gcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcg 303
|| ||| || ||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 569 gcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgtcg 510
Query: 304 gccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacg 363
| ||||| || || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 509 ggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttcaacg 450
Query: 364 agaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgcagc 423
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaaccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgcagc 390
Query: 424 acgtctaccccatcagcttctga 446
|||||||||||||||||||||||
Sbjct: 389 acgtctaccccatcagcttctga 367
>gb|AV923914.1|AV923914 AV923914 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20b23 5', mRNA sequence
Length = 520
Score = 369 bits (186), Expect = e-100
Identities = 300/338 (88%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 242
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 243 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 302
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 303 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 362
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 363 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 422
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 423 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 482
Query: 301 tcggccgcgggacgccgcgccacccgggcgccatcgag 338
|||| ||||| || || |||||||||||||||||||||
Sbjct: 483 tcgggcgcggcaccccccgccacccgggcgccatcgag 520
>gb|AV923570.1|AV923570 AV923570 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j20 5', mRNA sequence
Length = 630
Score = 355 bits (179), Expect = 2e-096
Identities = 272/303 (89%)
Strand = Plus / Plus
Query: 144 ttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggctccggcgtg 203
|||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||
Sbjct: 200 ttcgacaccaccgtggacgccttctacacggccatggccaagcacggcggctccaacgtg 259
Query: 204 ccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggcc 263
||| |||||||||||||||||||||||||| | ||||||| ||| || ||||||
Sbjct: 260 aagctggtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggcc 319
Query: 264 aacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccac 323
||||| ||| | ||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 320 aacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccac 379
Query: 324 ccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggc 383
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 380 ccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggc 439
Query: 384 gtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttc 499
Query: 444 tga 446
|||
Sbjct: 500 tga 502
>gb|AV928494.1|AV928494 AV928494 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdk07 3', mRNA sequence
Length = 664
Score = 355 bits (179), Expect = 2e-096
Identities = 272/303 (89%)
Strand = Plus / Minus
Query: 144 ttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggctccggcgtg 203
|||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||
Sbjct: 662 ttcgacaccaccgtggacgccttctacacggccatggccaagcacggcggctccaacgtg 603
Query: 204 ccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggcc 263
||| |||||||||||||||||||||||||| | ||||||| ||| || ||||||
Sbjct: 602 aagctggtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggcc 543
Query: 264 aacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccac 323
||||| ||| | ||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 542 aacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccac 483
Query: 324 ccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggc 383
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 482 ccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggc 423
Query: 384 gtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttc 363
Query: 444 tga 446
|||
Sbjct: 362 tga 360
>gb|DW474925.1|DW474925 1-n92 Subtracted libraries from epidermis of 7 day old barley
plants inoculated with R. secalis or the avirulence
protein NIP1 Hordeum vulgare subsp. vulgare cDNA clone
1-n92 similar to Identical to licheninase (EC 3.2.1.73)
in barley (S13734), mRNA sequence
Length = 343
Score = 353 bits (178), Expect = 7e-096
Identities = 280/314 (89%)
Strand = Plus / Minus
Query: 133 accagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcg 192
|||||||||| |||||||||||||| |||||||||||| |||| || ||| ||||||
Sbjct: 343 accagaacctgttcgacaccaccgtggacgccttctacacggccacggccaagcacggcg 284
Query: 193 gctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccagg 252
||||| |||| ||| |||||||||||||||||||||||||| | ||||||| ||
Sbjct: 283 gctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcggcacggcgg 224
Query: 253 ccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcggga 312
| || ||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| |
Sbjct: 223 cgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggca 164
Query: 313 cgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccaga 372
| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 163 ccccccgccacccgggcgtcatcgagacctacgtcttctccatgttcaacgagaaccaga 104
Query: 373 aggagagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctacc 432
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 aggacaacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctacc 44
Query: 433 ccatcagcttctga 446
||||||||||||||
Sbjct: 43 ccatcagcttctga 30
>gb|CB884195.1|CB884195 HV09B24r HV Hordeum vulgare subsp. vulgare cDNA clone HV09B24
5-PRIME, mRNA sequence
Length = 502
Score = 347 bits (175), Expect = 4e-094
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 144 ttcgacaccaccgtcgacgccttctacgtcgccatgggaaagaacggcggctccggcgtg 203
|||||||||||||| |||||||||||| |||||||| ||| ||||||||||| |||||
Sbjct: 12 ttcgacaccaccgtggacgccttctacacggccatgggcaagcacggcggctccagcgtg 71
Query: 204 ccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggcc 263
||| |||||||| ||||||||||||||||| ||||||||| ||| || ||||||
Sbjct: 72 aagctggtggtgtcggagagcgggtggccgtcgggcggcggcacggcggcgactccggcc 131
Query: 264 aacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccac 323
||||| ||| | ||||||||| ||||||||||||||||||| ||||| || || ||||||
Sbjct: 132 aacgctaggttctacaaccagcacctcatcaaccacgtcgggcgcggcaccccacgccac 191
Query: 324 ccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggc 383
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 192 ccgggcgccatcgagacctacatcttcgccatgttcaacgagaaccagaaggacagcggc 251
Query: 384 gtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttc 443
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 252 gtggagcagaactggggactcttctaccccaacatgcagcacgtctaccccatcaacttc 311
Query: 444 tga 446
|||
Sbjct: 312 tga 314
>gb|BG415255.2|BG415255 HVSMEk0005L24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005L24f, mRNA sequence
Length = 626
Score = 341 bits (172), Expect = 2e-092
Identities = 304/348 (87%)
Strand = Plus / Plus
Query: 99 tccggcaccgtcgtgcaggacggcgcctacgggtaccagaacctcttcgacaccaccgtc 158
||||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||| ||
Sbjct: 10 tccggcaccgtggtccaggacggctcctacgggtaccaaaacctgttcgacaccacggtg 69
Query: 159 gacgccttctacgtcgccatgggaaagaacggcggctccggcgtgccgctcgtggtgtcc 218
||| |||||||| ||||||| ||| ||| |||||| |||| ||| |||||||||
Sbjct: 70 gaccccttctacacggccatggccaagcgcgggggctccaacgtgaagctggtggtgtcc 129
Query: 219 gagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcgagggtgtac 278
||||||||||||||||| | ||||||| ||| || ||||||||||| ||| | |||
Sbjct: 130 gagagcgggtggccgtcagccggcggcacggcggcaaccccggccaacgccaggatctac 189
Query: 279 aaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggcgccatcgag 338
||||||| ||||||||||||||| || ||||| || || |||||||||||||||||||||
Sbjct: 190 aaccagtccctcatcaaccacgtggggcgcggcaccccccgccacccgggcgccatcgag 249
Query: 339 acctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggagcagaactgg 398
|||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct: 250 acctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcataactgg 309
Query: 399 gggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 310 gggctcttctacccaaacatgcagcacgtctaccccatcagcttctga 357
>gb|AV927361.1|AV927361 AV927361 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1l14 3', mRNA sequence
Length = 619
Score = 327 bits (165), Expect = 4e-088
Identities = 246/273 (90%)
Strand = Plus / Minus
Query: 174 gccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccg 233
||||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 612 gccatggccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccg 553
Query: 234 tccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatc 293
|| | ||||||| ||| || ||||||||||| ||| | ||||||||||||||||||
Sbjct: 552 tcagccggcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatc 493
Query: 294 aaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctcc 353
||||||||||| ||||| || || ||||||||||||||||||||||||||| ||||||||
Sbjct: 492 aaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctcc 433
Query: 354 atgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctacccc 413
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 432 atgttcaacgagaaccagaaggacaacggcgtggagcagaactgggggctcttctacccc 373
Query: 414 aacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||
Sbjct: 372 aacatgcagcacgtctaccccatcagcttctga 340
>gb|BJ545434.1|BJ545434 BJ545434 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35e23 3', mRNA sequence
Length = 494
Score = 327 bits (165), Expect = 4e-088
Identities = 246/273 (90%)
Strand = Plus / Minus
Query: 174 gccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccg 233
||||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 483 gccatggccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccg 424
Query: 234 tccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatc 293
|| | ||||||| ||| || ||||||||||| ||| | ||||||||||||||||||
Sbjct: 423 tcagccggcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatc 364
Query: 294 aaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctcc 353
||||||||||| ||||| || || ||||||||||||||||||||||||||| ||||||||
Sbjct: 363 aaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctcc 304
Query: 354 atgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctacccc 413
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 303 atgttcaacgagaaccagaaggacaacggcgtggagcagaactgggggctcttctacccc 244
Query: 414 aacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||
Sbjct: 243 aacatgcagcacgtctaccccatcagcttctga 211
>gb|CB879399.1|CB879399 HP02B03w HP Hordeum vulgare subsp. vulgare cDNA clone HP02B03
3-PRIME, mRNA sequence
Length = 644
Score = 325 bits (164), Expect = 1e-087
Identities = 236/260 (90%)
Strand = Plus / Minus
Query: 187 acggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcg 246
||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||
Sbjct: 639 acggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcggca 580
Query: 247 tccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggcc 306
||| || ||||||||||| ||| | ||||||||||||||||||||||||||||| |
Sbjct: 579 cggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggc 520
Query: 307 gcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacgaga 366
|||| || || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 519 gcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttcaacgaga 460
Query: 367 accagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacg 426
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 accagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgcagcacg 400
Query: 427 tctaccccatcagcttctga 446
||||||||||||||||||||
Sbjct: 399 tctaccccatcagcttctga 380
>gb|BI947339.1|BI947339 HVSMEl0005D01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D01f, mRNA sequence
Length = 484
Score = 321 bits (162), Expect = 2e-086
Identities = 267/302 (88%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 166 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 225
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 226 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 285
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 286 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 345
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| ||||||||||| |||||||||||||| | ||
Sbjct: 346 ccaagcacggcggctccaacgtgaagctggtggtgtccgaaagcgggtggccgtcagccg 405
Query: 241 gcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacg 300
||||| ||| || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 406 gcggcacggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacg 465
Query: 301 tc 302
||
Sbjct: 466 tc 467
>gb|AV929134.1|AV929134 AV929134 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11b22 3', mRNA sequence
Length = 644
Score = 319 bits (161), Expect = 9e-086
Identities = 218/237 (91%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcg 269
|||||||||||||||||||||||||| | ||||||| ||| || |||||||||||
Sbjct: 599 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggccaacgcc 540
Query: 270 agggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggc 329
||| | ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 539 aggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggc 480
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggag 389
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 479 gccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggag 420
Query: 390 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 363
>gb|AV930490.1|AV930490 AV930490 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22m09 3', mRNA sequence
Length = 642
Score = 319 bits (161), Expect = 9e-086
Identities = 218/237 (91%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcg 269
|||||||||||||||||||||||||| | ||||||| ||| || |||||||||||
Sbjct: 597 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggccaacgcc 538
Query: 270 agggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggc 329
||| | ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 537 aggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggc 478
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggag 389
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 477 gccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggag 418
Query: 390 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 361
>gb|BQ661884.1|BQ661884 HP01K19w HP Hordeum vulgare subsp. vulgare cDNA clone HP01K19
3-PRIME, mRNA sequence
Length = 617
Score = 319 bits (161), Expect = 9e-086
Identities = 218/237 (91%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcg 269
|||||||||||||||||||||||||| | ||||||| ||| || |||||||||||
Sbjct: 616 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggccaacgcc 557
Query: 270 agggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggc 329
||| | ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 556 aggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggc 497
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggag 389
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 496 gccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggag 437
Query: 390 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 380
>gb|BJ548188.1|BJ548188 BJ548188 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14c14 3', mRNA sequence
Length = 607
Score = 319 bits (161), Expect = 9e-086
Identities = 218/237 (91%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcg 269
|||||||||||||||||||||||||| | ||||||| ||| || |||||||||||
Sbjct: 576 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggccaacgcc 517
Query: 270 agggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggc 329
||| | ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 516 aggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggc 457
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggag 389
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 456 gccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggag 397
Query: 390 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 340
>gb|CB884196.1|CB884196 HV09B24u HV Hordeum vulgare subsp. vulgare cDNA clone HV09B24
3-PRIME, mRNA sequence
Length = 534
Score = 319 bits (161), Expect = 9e-086
Identities = 245/273 (89%)
Strand = Plus / Minus
Query: 174 gccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccg 233
|||||||| ||| ||||||||||| ||||| ||| |||||||| |||||||||||||||
Sbjct: 530 gccatgggcaagcacggcggctccagcgtgaagctggtggtgtcggagagcgggtggccg 471
Query: 234 tccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatc 293
|| ||||||||| ||| || ||||||||||| ||| | ||||||||| ||||||||
Sbjct: 470 tcgggcggcggcacggcggcgactccggccaacgctaggttctacaaccagcacctcatc 411
Query: 294 aaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctcc 353
||||||||||| ||||| || || ||||||||||||||||||||||||||| ||||| ||
Sbjct: 410 aaccacgtcgggcgcggcaccccacgccacccgggcgccatcgagacctacatcttcgcc 351
Query: 354 atgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctacccc 413
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 350 atgttcaacgagaaccagaaggacagcggcgtggagcagaactggggactcttctacccc 291
Query: 414 aacatgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||| |||||||
Sbjct: 290 aacatgcagcacgtctaccccatcaacttctga 258
>gb|CB884210.1|CB884210 HV12O06u HV Hordeum vulgare subsp. vulgare cDNA clone HV12O06
3-PRIME, mRNA sequence
Length = 526
Score = 319 bits (161), Expect = 9e-086
Identities = 245/273 (89%)
Strand = Plus / Minus
Query: 174 gccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccg 233
|||||||| ||| ||||||||||| ||||| ||| |||||||| |||||||||||||||
Sbjct: 522 gccatgggcaagcacggcggctccagcgtgaagctggtggtgtcggagagcgggtggccg 463
Query: 234 tccggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatc 293
|| ||||||||| ||| || ||||||||||| ||| | ||||||||| ||||||||
Sbjct: 462 tcgggcggcggcacggcggcgactccggccaacgctaggttctacaaccagcacctcatc 403
Query: 294 aaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctcc 353
||||||||||| ||||| || || ||||||||||||||||||||||||||| ||||| ||
Sbjct: 402 aaccacgtcgggcgcggcaccccacgccacccgggcgccatcgagacctacatcttcgcc 343
Query: 354 atgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctacccc 413
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 342 atgttcaacgagaaccagaaggacagcggcgtggagcagaactggggactcttctacccc 283
Query: 414 aacatgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||| |||||||
Sbjct: 282 aacatgcagcacgtctaccccatcaacttctga 250
>gb|BQ664638.1|BQ664638 HV04D23u HV Hordeum vulgare subsp. vulgare cDNA clone HV04D23
3-PRIME, mRNA sequence
Length = 528
Score = 315 bits (159), Expect = 1e-084
Identities = 243/271 (89%)
Strand = Plus / Minus
Query: 176 catgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtc 235
|||||| ||| ||||||||||| ||||| ||| |||||||| |||||||||||||||||
Sbjct: 528 catgggcaagcacggcggctccagcgtgaagctggtggtgtcggagagcgggtggccgtc 469
Query: 236 cggcggcggcgtccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaa 295
||||||||| ||| || ||||||||||| ||| | ||||||||| ||||||||||
Sbjct: 468 gggcggcggcacggcggcgactccggccaacgctaggttttacaaccagcacctcatcaa 409
Query: 296 ccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctccat 355
||||||||| ||||| || || ||||||||||||||||||||||||||| ||||| ||||
Sbjct: 408 ccacgtcgggcgcggcaccccacgccacccgggcgccatcgagacctacatcttcgccat 349
Query: 356 gttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccccaa 415
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 348 gttcaacgagaaccagaaggacagcggcgtggagcagaactggggactcttctaccccaa 289
Query: 416 catgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||| |||||||
Sbjct: 288 catgcagcacgtctaccccatcaacttctga 258
>gb|AV928013.1|AV928013 AV928013 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j20 3', mRNA sequence
Length = 647
Score = 313 bits (158), Expect = 6e-084
Identities = 246/274 (89%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 174 gccatgggaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccg 233
||||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 636 gccatggccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccg 577
Query: 234 tccggcggcggcgtccaggccacgccgg-ccaacgcgagggtgtacaaccagtacctcat 292
|| | ||||||| ||| || |||| ||||||| ||| | |||||||||||||||||
Sbjct: 576 tcagccggcggcacggcggcgaccccgggccaacgccaggatctacaaccagtacctcat 517
Query: 293 caaccacgtcggccgcgggacgccgcgccacccgggcgccatcgagacctacctcttctc 352
|||||||||||| ||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct: 516 caaccacgtcgggcgcggcaccccccgccacccgggcgccatcgagacctacgtcttctc 457
Query: 353 catgttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 456 catgttcaacgagaaccagaaggacaacggcgtggagcagaactgggggctcttctaccc 397
Query: 413 caacatgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||||||||||
Sbjct: 396 caacatgcagcacgtctaccccatcagcttctga 363
>gb|BJ543926.1|BJ543926 BJ543926 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35e23 5', mRNA sequence
Length = 266
Score = 307 bits (155), Expect = 3e-082
Identities = 216/237 (91%)
Strand = Plus / Plus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccggccaacgcg 269
|||||||||||||||||||||||||| | ||||||| ||| || |||||||||||
Sbjct: 25 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccggccaacgcc 84
Query: 270 agggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccgggc 329
||| | ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 85 aggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccgggc 144
Query: 330 gccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtggag 389
||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 145 gccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggngtggag 204
Query: 390 cagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cagaactgngggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 261
>gb|CD663219.1|CD663219 UCRHV18_04da12_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_04da12, mRNA sequence
Length = 541
Score = 307 bits (155), Expect = 3e-082
Identities = 233/259 (89%)
Strand = Plus / Minus
Query: 188 cggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcgt 247
|||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||
Sbjct: 541 cggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcggcac 482
Query: 248 ccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccg 307
||| || ||||||||||| ||| | ||||||||||||||||||||||||||||| ||
Sbjct: 481 ggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcg 422
Query: 308 cgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaa 367
||| || || ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 421 cggcaccccccgccacccgggcgccatggagacctacgtcttctccatgttcaacgagaa 362
Query: 368 ccagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgt 427
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgt 302
Query: 428 ctaccccatcagcttctga 446
||||||||||| |||||||
Sbjct: 301 ctaccccatcaccttctga 283
>gb|AV928558.1|AV928558 AV928558 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn24 3', mRNA sequence
Length = 658
Score = 305 bits (154), Expect = 1e-081
Identities = 218/238 (91%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggcgtccaggccacgccgg-ccaacgc 268
|||||||||||||||||||||||||| | ||||||| ||| || |||| |||||||
Sbjct: 609 gtggtgtccgagagcgggtggccgtcagccggcggcacggcggcgaccccgggccaacgc 550
Query: 269 gagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgccacccggg 328
||| | ||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct: 549 caggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgccacccggg 490
Query: 329 cgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcggcgtgga 388
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 489 cgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtgga 430
Query: 389 gcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagcttctga 372
>gb|BE421550.1|BE421550 HWM010.E03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM010.E03, mRNA sequence
Length = 1044
Score = 295 bits (149), Expect = 1e-078
Identities = 179/189 (94%)
Strand = Plus / Plus
Query: 258 ccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccg 317
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 122 ccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccc 181
Query: 318 cgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggag 377
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 182 cgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggac 241
Query: 378 agcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 301
Query: 438 agcttctga 446
|||||||||
Sbjct: 302 agcttctga 310
>gb|AV931924.1|AV931924 AV931924 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26l23 3', mRNA sequence
Length = 564
Score = 295 bits (149), Expect = 1e-078
Identities = 179/189 (94%)
Strand = Plus / Minus
Query: 258 ccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccg 317
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 548 ccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccc 489
Query: 318 cgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggag 377
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 488 cgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggac 429
Query: 378 agcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 369
Query: 438 agcttctga 446
|||||||||
Sbjct: 368 agcttctga 360
>gb|BQ464233.1|BQ464233 HF01L09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01L09
5-PRIME, mRNA sequence
Length = 489
Score = 295 bits (149), Expect = 1e-078
Identities = 179/189 (94%)
Strand = Plus / Plus
Query: 258 ccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccg 317
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 8 ccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccc 67
Query: 318 cgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggag 377
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68 cgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggac 127
Query: 378 agcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 187
Query: 438 agcttctga 446
|||||||||
Sbjct: 188 agcttctga 196
>gb|BQ661780.1|BQ661780 HP01E06w HP Hordeum vulgare subsp. vulgare cDNA clone HP01E06
3-PRIME, mRNA sequence
Length = 600
Score = 295 bits (149), Expect = 1e-078
Identities = 179/189 (94%)
Strand = Plus / Minus
Query: 258 ccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccg 317
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 568 ccggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccc 509
Query: 318 cgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggag 377
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 508 cgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggac 449
Query: 378 agcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 389
Query: 438 agcttctga 446
|||||||||
Sbjct: 388 agcttctga 380
>gb|BJ547063.1|BJ547063 BJ547063 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14c14 5', mRNA sequence
Length = 412
Score = 295 bits (149), Expect = 1e-078
Identities = 221/245 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 139 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 198
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||
Sbjct: 199 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaggacg 258
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 259 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacacggccatgg 318
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcg 240
||| ||||||||||| |||| ||| |||||||||||||||||||||||||| | ||
Sbjct: 319 ccaagcacggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccg 378
Query: 241 gcggc 245
|||||
Sbjct: 379 gcggc 383
>gb|BQ468175.1|BQ468175 HP01E06T HP Hordeum vulgare subsp. vulgare cDNA clone HP01E06
5-PRIME, mRNA sequence
Length = 547
Score = 293 bits (148), Expect = 5e-078
Identities = 232/260 (89%)
Strand = Plus / Plus
Query: 187 acggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtccggcggcggcg 246
||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||
Sbjct: 30 acggcggctccaacgtgaagctggtggtgtccgagagcgggtggccgtcagccggcggca 89
Query: 247 tccaggccacgccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggcc 306
||| || ||||||||||| ||| | |||||||||||||||||||||||||| |
Sbjct: 90 cggcggcgaccccggccaacgccaggatctacaaccagtacctcatcaaccacgttgttt 149
Query: 307 gcgggacgccgcgccacccgggcgccatcgagacctacctcttctccatgttcaacgaga 366
||| || || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 150 tcggcaccccccgccacccgggcgccatcgagacctacgtcttctccatgttcaacgaga 209
Query: 367 accagaaggagagcggcgtggagcagaactgggggctcttctaccccaacatgcagcacg 426
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 accagaaggacaacggcgtggagcagaactgggggctcttctaccccaacatgcagcacg 269
Query: 427 tctaccccatcagcttctga 446
||||||||||||||||||||
Sbjct: 270 tctaccccatcagcttctga 289
>gb|AV928246.1|AV928246 AV928246 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i24 3', mRNA sequence
Length = 641
Score = 291 bits (147), Expect = 2e-077
Identities = 177/187 (94%)
Strand = Plus / Minus
Query: 260 ggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcg 319
||||||||| ||| | ||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 558 ggccaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccg 499
Query: 320 ccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagag 379
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 498 ccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaa 439
Query: 380 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 379
Query: 440 cttctga 446
|||||||
Sbjct: 378 cttctga 372
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 210 gtggtgtccgagagcgggtggccgtccggcggcggc 245
|||||||||||||||||||||||||| | |||||||
Sbjct: 610 gtggtgtccgagagcgggtggccgtcagccggcggc 575
>gb|BG310053.1|BG310053 HVSMEc0016D10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016D10f, mRNA sequence
Length = 817
Score = 287 bits (145), Expect = 3e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 258 ccggccaacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccg 317
||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 570 ccggcaaacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccc 511
Query: 318 cgccacccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggag 377
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 510 cgccacccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggac 451
Query: 378 agcggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aacggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatc 391
Query: 438 agcttctga 446
|||||||||
Sbjct: 390 agcttctga 382
>gb|BE421248.1|BE421248 HWM007.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM007.D01, mRNA sequence
Length = 813
Score = 285 bits (144), Expect = 1e-075
Identities = 174/184 (94%)
Strand = Plus / Plus
Query: 263 caacgcgagggtgtacaaccagtacctcatcaaccacgtcggccgcgggacgccgcgcca 322
|||||| ||| | ||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct: 132 caacgccaggatctacaaccagtacctcatcaaccacgtcgggcgcggcaccccccgcca 191
Query: 323 cccgggcgccatcgagacctacctcttctccatgttcaacgagaaccagaaggagagcgg 382
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 192 cccgggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacaacgg 251
Query: 383 cgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagctt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcagctt 311
Query: 443 ctga 446
||||
Sbjct: 312 ctga 315
>gb|BF265541.2|BF265541 HV_CEa0012I19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012I19f, mRNA sequence
Length = 751
Score = 283 bits (143), Expect = 5e-075
Identities = 212/235 (90%)
Strand = Plus / Plus
Query: 1 cccgcaccgggtcgccgctcatggccaacatctacccgtacctggcctgggcatacaacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 cccgcaccggcgcgccgctcatggccaacatctacccgtacctggcctgggcctacaacc 495
Query: 61 ccagcgccatggacatgagctacgcgctcttcacctcctccggcaccgtcgtgcaggacg 120
| ||||||||||||||||||||||||||||||||| | ||||||||||| || || ||||
Sbjct: 496 cgagcgccatggacatgagctacgcgctcttcaccgcgtccggcaccgtggtccaagacg 555
Query: 121 gcgcctacgggtaccagaacctcttcgacaccaccgtcgacgccttctacgtcgccatgg 180
|| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 556 gctcctacgggtaccagaacctgttcgacaccaccgtggacgccttctacaccgccatgg 615
Query: 181 gaaagaacggcggctccggcgtgccgctcgtggtgtccgagagcgggtggccgtc 235
||| ||||||||||| |||| ||| ||||||||||| ||||||||||||||
Sbjct: 616 ccaagcacggcggctccaacgtgaagctggtggtgtccgaaagcgggtggccgtc 670
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,740
Number of Sequences: 312970
Number of extensions: 151740
Number of successful extensions: 39480
Number of sequences better than 0.5: 166
Number of HSP's better than 0.5 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39056
Number of HSP's gapped (non-prelim): 419
length of query: 923
length of database: 175,134,539
effective HSP length: 19
effective length of query: 904
effective length of database: 169,188,109
effective search space: 152946050536
effective search space used: 152946050536
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)