BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA024243.1|CA024243 HZ48M07r HZ Hordeum vulgare subsp. v... 127 6e-028
gb|AJ461196.1|AJ461196 AJ461196 S00002 Hordeum vulgare subs... 80 1e-013
gb|AL503076.1|AL503076 AL503076 Hordeum vulgare Barke roots... 46 0.002
gb|BM372253.2|BM372253 EBro03_SQ004_H03_R root, 3 week, wat... 46 0.002
gb|BJ469140.1|BJ469140 BJ469140 K. Sato unpublished cDNA li... 42 0.027
gb|BJ470998.1|BJ470998 BJ470998 K. Sato unpublished cDNA li... 42 0.027
>gb|CA024243.1|CA024243 HZ48M07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M07
5-PRIME, mRNA sequence
Length = 518
Score = 127 bits (64), Expect = 6e-028
Identities = 168/203 (82%)
Strand = Plus / Minus
Query: 348 agctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacgg 407
|||| |||| |||| ||| |||| |||||| | || ||||| ||||||||||| ||||
Sbjct: 518 agcttccgatgtgcggctgttcgtggaggaagatggtggcgagcacggtggtgacgacgg 459
Query: 408 tgcagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgact 467
||||||| || ||||||||||| |||||||| || |||||||| | |||||||||||||
Sbjct: 458 tgcagagggggttgaacatggccgagtagagaggccccctcaccgttatgcaccacgact 399
Query: 468 gcaggtagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcga 527
||||||||||||| || || ||||| | | |||| | ||||| ||||| ||||||||
Sbjct: 398 gcaggtagaacgtcacccctgacccaaccgcgccggcgaagatgcagcccatgagctcga 339
Query: 528 agagcgagtggatcctccaggcg 550
||||||||| |||| ||||||||
Sbjct: 338 agagcgagttgatcttccaggcg 316
>gb|AJ461196.1|AJ461196 AJ461196 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200024D06F1, mRNA sequence
Length = 240
Score = 79.8 bits (40), Expect = 1e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
||||||||||||||||| | |||||||||||||| ||||||| ||| |||| ||||||
Sbjct: 108 gctttgccccacagcacgatgtacagccccgcgaccacggcgaacgcacccaacaagctt 49
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtg 400
|||| |||| ||| |||| |||||| | || ||||| ||||||||||
Sbjct: 48 ccgatgtgcggctgttcgtggaggaagatggtggcgagcacggtggtg 1
>gb|AL503076.1|AL503076 AL503076 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09K03u 3', mRNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 284 gcgtcgcccgctttgccccacagcaccacgtacag 318
|||||| | ||||||||||||||||| ||||||||
Sbjct: 186 gcgtcgtcagctttgccccacagcacaacgtacag 220
>gb|BM372253.2|BM372253 EBro03_SQ004_H03_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_H03 5', mRNA sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 284 gcgtcgcccgctttgccccacagcaccacgtacag 318
|||||| | ||||||||||||||||| ||||||||
Sbjct: 387 gcgtcgtcagctttgccccacagcacaacgtacag 353
>gb|BJ469140.1|BJ469140 BJ469140 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13f18 5', mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 368 tcgcggaggacggcggcggcg 388
|||||||||||||||||||||
Sbjct: 43 tcgcggaggacggcggcggcg 23
>gb|BJ470998.1|BJ470998 BJ470998 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30c15 5', mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 368 tcgcggaggacggcggcggcg 388
|||||||||||||||||||||
Sbjct: 49 tcgcggaggacggcggcggcg 29
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,641
Number of Sequences: 312970
Number of extensions: 135641
Number of successful extensions: 35644
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35637
Number of HSP's gapped (non-prelim): 6
length of query: 790
length of database: 175,134,539
effective HSP length: 19
effective length of query: 771
effective length of database: 169,188,109
effective search space: 130444032039
effective search space used: 130444032039
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)