BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665451.2.1
(911 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ766637.1|BQ766637 EBro08_SQ006_N18_R root, 3 week, dro... 111 4e-023
gb|BF622296.2|BF622296 HVSMEa0002K01f Hordeum vulgare seedl... 109 2e-022
gb|BF622298.2|BF622298 HVSMEa0002K03f Hordeum vulgare seedl... 109 2e-022
gb|BF624359.3|BF624359 HVSMEa0014E11f Hordeum vulgare seedl... 109 2e-022
gb|BQ763153.1|BQ763153 EBro02_SQ007_K08_R root, 3 week, hyd... 103 1e-020
gb|BF253803.2|BF253803 HVSMEf0002C17f Hordeum vulgare seedl... 96 2e-018
gb|BI777370.2|BI777370 EBro04_SQ001_A06_R root, 3 week, sal... 96 2e-018
gb|BM442923.2|BM442923 EBro02_SQ001_N17_R root, 3 week, hyd... 88 6e-016
gb|BF261927.2|BF261927 HV_CEa0002J15f Hordeum vulgare seedl... 86 2e-015
gb|AL450842.1|AL450842 AL450842 Hordeum vulgare Barke etiol... 84 9e-015
gb|BF253797.2|BF253797 HVSMEf0002C11f Hordeum vulgare seedl... 80 1e-013
gb|BF258539.2|BF258539 HVSMEf0016A04f Hordeum vulgare seedl... 80 1e-013
gb|BF623386.2|BF623386 HVSMEa0016I09f Hordeum vulgare seedl... 76 2e-012
gb|BF257698.2|BF257698 HVSMEf0013K02f Hordeum vulgare seedl... 76 2e-012
gb|BI950533.1|BI950533 HVSMEl0021D14f Hordeum vulgare spike... 76 2e-012
gb|BQ465287.1|BQ465287 HU03D01r HU Hordeum vulgare subsp. v... 76 2e-012
gb|CA004703.1|CA004703 HS18G22r HS Hordeum vulgare subsp. v... 76 2e-012
gb|CA007742.1|CA007742 HU08O02r HU Hordeum vulgare subsp. v... 76 2e-012
gb|CA012539.1|CA012539 HT05L11r HT Hordeum vulgare subsp. v... 76 2e-012
gb|CA017465.1|CA017465 HV05E15r HV Hordeum vulgare subsp. v... 76 2e-012
gb|CA017476.1|CA017476 HV05F04r HV Hordeum vulgare subsp. v... 76 2e-012
gb|CA019652.1|CA019652 HV12K19r HV Hordeum vulgare subsp. v... 76 2e-012
gb|BG299389.1|BG299389 HVSMEa0019L19f Hordeum vulgare seedl... 74 9e-012
gb|BF627874.2|BF627874 HVSMEb0006C01f Hordeum vulgare seedl... 74 9e-012
gb|BF256380.2|BF256380 HVSMEf0009H03f Hordeum vulgare seedl... 74 9e-012
gb|BF259078.2|BF259078 HVSMEf0017J19f Hordeum vulgare seedl... 74 9e-012
gb|BG368894.1|BG368894 HVSMEi0021D06f Hordeum vulgare 20 DA... 74 9e-012
gb|BE214207.2|BE214207 HV_CEb0002K18f Hordeum vulgare seedl... 74 9e-012
gb|BM375338.2|BM375338 EBem06_SQ003_A18_R embryo, 21 DPA, n... 74 9e-012
gb|CA022668.1|CA022668 HZ44A05r HZ Hordeum vulgare subsp. v... 74 9e-012
gb|BF255189.1|BF255189 HVSMEf0006D04f Hordeum vulgare seedl... 72 4e-011
gb|BF256426.3|BF256426 HVSMEf0009J14f Hordeum vulgare seedl... 70 1e-010
gb|AV924070.1|AV924070 AV924070 K. Sato unpublished cDNA li... 68 6e-010
gb|BM816911.1|BM816911 HB106C10_SK.ab1 HB Hordeum vulgare s... 68 6e-010
gb|BF624808.3|BF624808 HVSMEa0017M20f Hordeum vulgare seedl... 64 9e-009
gb|BF257083.2|BF257083 HVSMEf0011M23f Hordeum vulgare seedl... 64 9e-009
gb|BF255920.2|BF255920 HVSMEf0008D10f Hordeum vulgare seedl... 64 9e-009
gb|BM369733.2|BM369733 EBem07_SQ004_H07_R embryo, 28 DPA, n... 62 3e-008
gb|BF622044.2|BF622044 HVSMEa0001J20f Hordeum vulgare seedl... 60 1e-007
gb|BF259210.2|BF259210 HVSMEf0018C22f Hordeum vulgare seedl... 60 1e-007
gb|BF267193.3|BF267193 HV_CEa0017D12f Hordeum vulgare seedl... 60 1e-007
gb|BQ763720.1|BQ763720 EBro03_SQ005_A10_R root, 3 week, wat... 60 1e-007
gb|BU989585.1|BU989585 HF22C07r HF Hordeum vulgare subsp. v... 58 5e-007
gb|BE411006.1|BE411006 ISC001.D03F990519 ITEC ISC Barley Le... 56 2e-006
gb|BF623987.2|BF623987 HVSMEa0008F14f Hordeum vulgare seedl... 56 2e-006
gb|BI953615.1|BI953615 HVSMEm0013J07f Hordeum vulgare green... 56 2e-006
gb|BI954235.1|BI954235 HVSMEm0016M03f Hordeum vulgare green... 56 2e-006
gb|BE215757.1|BE215757 HV_CEb0008G14f Hordeum vulgare seedl... 56 2e-006
gb|BE216520.1|BE216520 HV_CEb0010L11f Hordeum vulgare seedl... 56 2e-006
gb|BF065573.1|BF065573 HV_CEb0012M23f Hordeum vulgare seedl... 56 2e-006
gb|BF065604.1|BF065604 HV_CEb0012O15f Hordeum vulgare seedl... 56 2e-006
gb|BF065899.1|BF065899 HV_CEb0014E21f Hordeum vulgare seedl... 56 2e-006
gb|BF065922.1|BF065922 HV_CEb0014F21f Hordeum vulgare seedl... 56 2e-006
gb|BF065944.1|BF065944 HV_CEb0014G19f Hordeum vulgare seedl... 56 2e-006
gb|BF065968.1|BF065968 HV_CEb0014H19f Hordeum vulgare seedl... 56 2e-006
gb|BF264380.2|BF264380 HV_CEa0009E08f Hordeum vulgare seedl... 56 2e-006
gb|BF266117.2|BF266117 HV_CEa0014D16f Hordeum vulgare seedl... 56 2e-006
gb|BF267015.2|BF267015 HV_CEa0016L05f Hordeum vulgare seedl... 56 2e-006
gb|BF267384.2|BF267384 HV_CEa0017M06f Hordeum vulgare seedl... 56 2e-006
gb|BE559055.2|BE559055 HV_CEb0022I16f Hordeum vulgare seedl... 56 2e-006
gb|AV922724.1|AV922724 AV922724 K. Sato unpublished cDNA li... 56 2e-006
gb|BG299457.1|BG299457 HVSMEa0020C09f Hordeum vulgare seedl... 52 3e-005
gb|BU998635.1|BU998635 HI11L03r HI Hordeum vulgare subsp. v... 52 3e-005
gb|AL504826.1|AL504826 AL504826 Hordeum vulgare Barke roots... 50 1e-004
gb|AL505815.1|AL505815 AL505815 Hordeum vulgare Barke roots... 50 1e-004
gb|AV833639.1|AV833639 AV833639 K. Sato unpublished cDNA li... 50 1e-004
gb|BF622591.2|BF622591 HVSMEa0007C21f Hordeum vulgare seedl... 50 1e-004
gb|BF623115.2|BF623115 HVSMEa0014H14f Hordeum vulgare seedl... 50 1e-004
gb|BF625970.2|BF625970 HVSMEa0015B01f Hordeum vulgare seedl... 50 1e-004
gb|BF623190.3|BF623190 HVSMEa0015C04f Hordeum vulgare seedl... 50 1e-004
gb|BF265689.1|BF265689 HV_CEa0013B06f Hordeum vulgare seedl... 50 1e-004
gb|BF066033.2|BF066033 HV_CEb0014K12f Hordeum vulgare seedl... 50 1e-004
gb|CA004877.1|CA004877 HS18P04r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CA025935.1|CA025935 HZ53J07r HZ Hordeum vulgare subsp. v... 50 1e-004
gb|AL503324.1|AL503324 AL503324 Hordeum vulgare Barke roots... 48 5e-004
gb|BF622191.2|BF622191 HVSMEa0001P16f Hordeum vulgare seedl... 48 5e-004
gb|BF622224.2|BF622224 HVSMEa0002C05f Hordeum vulgare seedl... 48 5e-004
gb|BF622512.2|BF622512 HVSMEa0004K18f Hordeum vulgare seedl... 48 5e-004
gb|BF621550.2|BF621550 HVSMEa0011F24f Hordeum vulgare seedl... 48 5e-004
gb|BF624202.2|BF624202 HVSMEa0012J22f Hordeum vulgare seedl... 48 5e-004
gb|BF623248.2|BF623248 HVSMEa0016A09f Hordeum vulgare seedl... 48 5e-004
gb|BF624618.2|BF624618 HVSMEa0017E14f Hordeum vulgare seedl... 48 5e-004
gb|BG299731.1|BG299731 HVSMEa0021J09f Hordeum vulgare seedl... 48 5e-004
gb|BF621862.3|BF621862 HVSMEa0001C05f Hordeum vulgare seedl... 48 5e-004
gb|BF622215.3|BF622215 HVSMEa0002A20f Hordeum vulgare seedl... 48 5e-004
gb|BF624504.3|BF624504 HVSMEa0016N24f Hordeum vulgare seedl... 48 5e-004
gb|BG299804.2|BG299804 HVSMEa0021O04f Hordeum vulgare seedl... 48 5e-004
gb|BF259948.2|BF259948 HVSMEf0020L05f Hordeum vulgare seedl... 48 5e-004
gb|BI954877.1|BI954877 HVSMEm0020D03f Hordeum vulgare green... 48 5e-004
gb|BE558770.2|BE558770 HV_CEb0020E13f Hordeum vulgare seedl... 48 5e-004
gb|BF629286.3|BF629286 HVSMEb0010K15f Hordeum vulgare seedl... 48 5e-004
gb|BQ466487.1|BQ466487 HT02K21r HT Hordeum vulgare subsp. v... 48 5e-004
gb|BM442945.2|BM442945 EBro02_SQ001_P16_R root, 3 week, hyd... 48 5e-004
gb|BQ766372.1|BQ766372 EBro08_SQ005_E23 _R root, 3 week, dr... 48 5e-004
gb|BI948705.1|BI948705 HVSMEl0010J03f Hordeum vulgare spike... 46 0.002
gb|BI949974.1|BI949974 HVSMEl0017G12f Hordeum vulgare spike... 46 0.002
gb|BQ464763.1|BQ464763 HU01G03T HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ466342.1|BQ466342 HT02E05r HT Hordeum vulgare subsp. v... 46 0.002
gb|BQ466475.1|BQ466475 HT02K07r HT Hordeum vulgare subsp. v... 46 0.002
gb|BQ466550.1|BQ466550 HT02N19r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA004080.1|CA004080 HS16H17r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004785.1|CA004785 HS18K23r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA013624.1|CA013624 HT09A14r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA014093.1|CA014093 HT10F20r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA014271.1|CA014271 HT10O05r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA014392.1|CA014392 HT11D14r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA015258.1|CA015258 HT13M04r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA015289.1|CA015289 HT13N17r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA015381.1|CA015381 HT14C07r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA015590.1|CA015590 HT14M12r HT Hordeum vulgare subsp. v... 46 0.002
gb|BF622265.2|BF622265 HVSMEa0002G13f Hordeum vulgare seedl... 44 0.008
gb|BF623684.2|BF623684 HVSMEa0003M02f Hordeum vulgare seedl... 44 0.008
gb|BF623830.2|BF623830 HVSMEa0007D03f Hordeum vulgare seedl... 44 0.008
gb|BF625550.2|BF625550 HVSMEa0011E08f Hordeum vulgare seedl... 44 0.008
gb|BG299996.1|BG299996 HVSMEa0022O20f Hordeum vulgare seedl... 44 0.008
gb|BF631562.2|BF631562 HVSMEb0016G15f Hordeum vulgare seedl... 44 0.008
gb|BF257478.2|BF257478 HVSMEf0013A10f Hordeum vulgare seedl... 44 0.008
gb|BF259240.3|BF259240 HVSMEf0018G18f Hordeum vulgare seedl... 44 0.008
gb|BE195630.3|BE195630 HVSMEh0089P24f Hordeum vulgare 5-45 ... 44 0.008
gb|BQ765875.1|BQ765875 EBro03_SQ008_M07_R root, 3 week, wat... 44 0.008
gb|CA003018.1|CA003018 HS09C19r HS Hordeum vulgare subsp. v... 44 0.008
gb|CA027668.1|CA027668 HZ59K12r HZ Hordeum vulgare subsp. v... 44 0.008
gb|BF623515.3|BF623515 HVSMEa0002H21f Hordeum vulgare seedl... 42 0.032
gb|BI960529.1|BI960529 HVSMEn0024O20f Hordeum vulgare rachi... 42 0.032
gb|BG343212.2|BG343212 HVSMEg0005B17f Hordeum vulgare pre-a... 42 0.032
gb|CA023567.1|CA023567 HZ46K21r HZ Hordeum vulgare subsp. v... 42 0.032
gb|CA030217.1|CA030217 HX06G19r HX Hordeum vulgare subsp. v... 42 0.032
gb|CA030738.1|CA030738 HX07P15r HX Hordeum vulgare subsp. v... 42 0.032
gb|CA032479.1|CA032479 HX13C24r HX Hordeum vulgare subsp. v... 42 0.032
gb|CB874821.1|CB874821 HX06G19w HX Hordeum vulgare subsp. v... 42 0.032
gb|CB875329.1|CB875329 HX07P15w HX Hordeum vulgare subsp. v... 42 0.032
gb|CV057605.1|CV057605 BNEL29g1 Barley EST endosperm librar... 42 0.032
gb|CV058924.1|CV058924 BNEL42e11 Barley EST endosperm libra... 42 0.032
gb|CV061498.1|CV061498 BNEL69f11 Barley EST endosperm libra... 42 0.032
gb|BF622292.2|BF622292 HVSMEa0002I21f Hordeum vulgare seedl... 40 0.12
gb|BF625851.2|BF625851 HVSMEa0013N14f Hordeum vulgare seedl... 40 0.12
gb|BF259796.2|BF259796 HVSMEf0020E15f Hordeum vulgare seedl... 40 0.12
gb|BI954394.1|BI954394 HVSMEm0017K14f Hordeum vulgare green... 40 0.12
gb|BF064527.1|BF064527 HV_CEb0015J21f Hordeum vulgare seedl... 40 0.12
gb|AV913623.1|AV913623 AV913623 K. Sato unpublished cDNA li... 40 0.12
gb|BM817225.1|BM817225 HC109B04_T3.ab1 HC Hordeum vulgare s... 40 0.12
gb|BQ467879.1|BQ467879 HR01D11r HR Hordeum vulgare subsp. v... 40 0.12
gb|BQ471126.1|BQ471126 HV01D06T HV Hordeum vulgare subsp. v... 40 0.12
gb|BQ472178.1|BQ472178 HV04K06r HV Hordeum vulgare subsp. v... 40 0.12
gb|BM375129.2|BM375129 EBem06_SQ002_H03_R embryo, 21 DPA, n... 40 0.12
gb|BF625649.2|BF625649 HVSMEa0013B21f Hordeum vulgare seedl... 38 0.49
gb|BF619549.2|BF619549 HVSMEc0004A15f Hordeum vulgare seedl... 38 0.49
gb|BF619363.2|BF619363 HVSMEc0016M05f Hordeum vulgare seedl... 38 0.49
gb|BF620788.2|BF620788 HVSMEc0020N16f Hordeum vulgare seedl... 38 0.49
gb|BF254945.2|BF254945 HVSMEf0005H21f Hordeum vulgare seedl... 38 0.49
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 38 0.49
gb|BI959586.1|BI959586 HVSMEn0020E21f Hordeum vulgare rachi... 38 0.49
gb|BE196145.3|BE196145 HVSMEh0091H19f Hordeum vulgare 5-45 ... 38 0.49
gb|BE196654.3|BE196654 HVSMEh0092O09f Hordeum vulgare 5-45 ... 38 0.49
gb|AV932609.1|AV932609 AV932609 K. Sato unpublished cDNA li... 38 0.49
gb|BJ471554.1|BJ471554 BJ471554 K. Sato unpublished cDNA li... 38 0.49
gb|BQ460114.1|BQ460114 HA07C20r HA Hordeum vulgare subsp. v... 38 0.49
gb|BQ467510.1|BQ467510 HS04A05r HS Hordeum vulgare subsp. v... 38 0.49
gb|BQ467646.1|BQ467646 HS04G23r HS Hordeum vulgare subsp. v... 38 0.49
gb|BM369749.2|BM369749 EBem07_SQ004_H24_R embryo, 28 DPA, n... 38 0.49
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 38 0.49
gb|BI776549.2|BI776549 EBpi05_SQ001_N14_R pistil, 8 DPA, no... 38 0.49
gb|BQ765092.1|BQ765092 EBca01_SQ005_D19_R carpel, pre-anthe... 38 0.49
gb|CA001613.1|CA001613 HS05B06r HS Hordeum vulgare subsp. v... 38 0.49
gb|CA001781.1|CA001781 HS05J03r HS Hordeum vulgare subsp. v... 38 0.49
gb|CA012182.1|CA012182 HT04L19r HT Hordeum vulgare subsp. v... 38 0.49
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA023217.1|CA023217 HZ45J07r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA024893.1|CA024893 HZ50K02r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA025920.1|CA025920 HZ53I14r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA027026.1|CA027026 HZ57K21r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA027925.1|CA027925 HZ60H09r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA028145.1|CA028145 HZ61C04r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA028873.1|CA028873 HZ63H22r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA029001.1|CA029001 HZ63O10r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CA029484.1|CA029484 HZ65F17r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CK122333.1|CK122333 BES1824102o06 BES1824 Hordeum vulgar... 38 0.49
gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transf... 38 0.49
>gb|BQ766637.1|BQ766637 EBro08_SQ006_N18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_N18 5', mRNA sequence
Length = 504
Score = 111 bits (56), Expect = 4e-023
Identities = 189/232 (81%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| ||||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 11 gccggtgaggctcatcggctgcttcggcagcccggtcgtgcaccgcgcggagctggccct 70
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||||| || ||||| | || |||||||||
Sbjct: 71 gcgcctcaagggcgtcccctacgagctcatcctcgaagacct---caacaacaagagcga 127
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || |||||||||||||||||| |
Sbjct: 128 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacggcca--- 184
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
||| ||||| | ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 185 ccgctccatcccggagtcgctcgtcatcgtcgagtacgtcgacgaggccttc 236
Score = 48.1 bits (24), Expect = 5e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 421 cgctgctggaggcgcagctc---gagggaaagaggttcttcgccggcgac 467
||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct: 400 cgctgctggaggcgcagctgccggaggggaagaggttcttcggcggcgac 449
>gb|BF622296.2|BF622296 HVSMEa0002K01f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002K01f, mRNA sequence
Length = 700
Score = 109 bits (55), Expect = 2e-022
Identities = 134/159 (84%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 99 gtgccgtacgagctgatcctggaggacctgttcggcagcaagagcgagctcctgctccac 158
||||||||||||||| || ||||||||||| | |||||||||||| || |||||| |
Sbjct: 158 gtgccgtacgagctgctcgtggaggacctg---gccagcaagagcgacctgctgctcgcc 214
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacggccgggccatctcc 218
||||||||||| || || ||| ||||| ||||||||||||||| || ||| ||| |
Sbjct: 215 cacaaccccgtctaccagtcggtccccgtcctcctccacggcgaccgc---gccgtctgc 271
Query: 219 gagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
|| ||||||||||||| ||||||||||||||||||||||
Sbjct: 272 gactccctcgtcatcgtcgagtacgtcgacgaggccttc 310
>gb|BF622298.2|BF622298 HVSMEa0002K03f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002K03f, mRNA sequence
Length = 699
Score = 109 bits (55), Expect = 2e-022
Identities = 134/159 (84%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 99 gtgccgtacgagctgatcctggaggacctgttcggcagcaagagcgagctcctgctccac 158
||||||||||||||| || ||||||||||| | |||||||||||| || |||||| |
Sbjct: 158 gtgccgtacgagctgctcgtggaggacctg---gccagcaagagcgacctgctgctcgcc 214
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacggccgggccatctcc 218
||||||||||| || || ||| ||||| ||||||||||||||| || ||| ||| |
Sbjct: 215 cacaaccccgtctaccagtcggtccccgtcctcctccacggcgaccgc---gccgtctgc 271
Query: 219 gagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
|| ||||||||||||| ||||||||||||||||||||||
Sbjct: 272 gactccctcgtcatcgtcgagtacgtcgacgaggccttc 310
>gb|BF624359.3|BF624359 HVSMEa0014E11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014E11f, mRNA sequence
Length = 490
Score = 109 bits (55), Expect = 2e-022
Identities = 134/159 (84%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 99 gtgccgtacgagctgatcctggaggacctgttcggcagcaagagcgagctcctgctccac 158
||||||||||||||| || ||||||||||| | |||||||||||| || |||||| |
Sbjct: 151 gtgccgtacgagctgctcgtggaggacctg---gccagcaagagcgacctgctgctcgcc 207
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacggccgggccatctcc 218
||||||||||| || || ||| ||||| ||||||||||||||| || ||| ||| |
Sbjct: 208 cacaaccccgtctaccagtcggtccccgtcctcctccacggcgaccgc---gccgtctgc 264
Query: 219 gagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
|| ||||||||||||| ||||||||||||||||||||||
Sbjct: 265 gactccctcgtcatcgtcgagtacgtcgacgaggccttc 303
>gb|BQ763153.1|BQ763153 EBro02_SQ007_K08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_K08 5', mRNA sequence
Length = 614
Score = 103 bits (52), Expect = 1e-020
Identities = 188/232 (81%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| ||||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 17 gccggtgaggctcatcggctgcttcggcagcccggtcgtgcaccgcgcggagctggccct 76
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||||| || ||||| | || |||||||||
Sbjct: 77 gcgcctcaagggcgtcccctacgagctcatcctcgaagacct---caacaacaagagcga 133
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || ||||||||||||||||| || |
Sbjct: 134 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacgggcaccg 193
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
| ||||| | ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 194 ct---ccatcccggagtcgctcgtcatcgtcgagtacgtcgacgaggccttc 242
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 421 cgctgctggaggcgcagct 439
|||||||||||||||||||
Sbjct: 406 cgctgctggaggcgcagct 424
>gb|BF253803.2|BF253803 HVSMEf0002C17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C17f, mRNA sequence
Length = 809
Score = 95.6 bits (48), Expect = 2e-018
Identities = 187/232 (80%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| |||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 43 gccggtgaggctcatcggcgccttcggcagcccggtcgtgcaccgcgcggagctggccct 102
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||| ||||||||| || || |||||||||
Sbjct: 103 gcgcctcaagggcgtcccctacgagctcatcgaggaggacct---cgacaacaagagcga 159
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || |||||||||||||||||| |
Sbjct: 160 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacggcca--- 216
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
||| ||||| | || || |||||||||| ||||||| ||||||||||||||
Sbjct: 217 ccgctccatcccggactcgctcgtcatcgtcgagtacatcgacgaggccttc 268
Score = 48.1 bits (24), Expect = 5e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 421 cgctgctggaggcgcagctc---gagggaaagaggttcttcgccggcgac 467
||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct: 432 cgctgctggaggcgcagctgccggaggggaagaggttcttcggcggcgac 481
>gb|BI777370.2|BI777370 EBro04_SQ001_A06_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A06 5', mRNA sequence
Length = 378
Score = 95.6 bits (48), Expect = 2e-018
Identities = 188/232 (81%), Gaps = 7/232 (3%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| ||||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 27 gccggtgaggctcatcggctgcttcggcagcccggtcgtgcaccgcgcggagctggccct 86
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||||| || ||||| | || |||||||||
Sbjct: 87 gcgcctcaagggcgtcccctacgagctcatcctcgaagacct---caacaacaagagcga 143
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| |||||| |||| ||||||| || |||||||||||||||||| ||
Sbjct: 144 gctgctgctcacgcacaactccgtccacaagaccgtccccgtgctcctccacggccac-- 201
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
|| ||||| | ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 202 cct--ccatcccggagtcgctcgtcatcgtcgagtacgtcgacgaggccttc 251
>gb|BM442923.2|BM442923 EBro02_SQ001_N17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_N17 5', mRNA sequence
Length = 440
Score = 87.7 bits (44), Expect = 6e-016
Identities = 186/232 (80%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| |||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 45 gccggtgaggctcatcggcgccttcggcagcccggtcgtgcaccgcgcggagctggccct 104
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||| ||||||||| | || |||||||||
Sbjct: 105 gcgcctcaagggcgtcccctacgagctcatcgaggaggacct---caacaacaagagcga 161
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || |||||||||||||||||| |
Sbjct: 162 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacggcca--- 218
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
||| ||||| | || || |||||||||| ||||||| ||||||||||||||
Sbjct: 219 ccgctccatcccggactcgctcgtcatcgtcgagtacatcgacgaggccttc 270
>gb|BF261927.2|BF261927 HV_CEa0002J15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002J15f, mRNA sequence
Length = 825
Score = 85.7 bits (43), Expect = 2e-015
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 161 caaccccgtgcacaagaaggtgcccgtgctcctccacggcgacggccgggccatctccga 220
||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| |||
Sbjct: 195 caaccccgtccacaagaaggtgcccgtgctcctcca---cgacggccgcgccgtctgcga 251
Query: 221 gtccctcgtcatc 233
|||||||||||||
Sbjct: 252 gtccctcgtcatc 264
>gb|AL450842.1|AL450842 AL450842 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H17u 5', mRNA sequence
Length = 700
Score = 83.8 bits (42), Expect = 9e-015
Identities = 107/128 (83%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 135 agcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctc 194
||||||||||| || ||||| | ||||||||| | ||| | |||||||| |||||| ||
Sbjct: 138 agcaagagcgacctgctgctgaagcacaaccccatccaccaaaaggtgcctgtgctcgtc 197
Query: 195 cacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggcc 254
|| || ||| |||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 198 catggtgac---cgggccatctgcgagtccctcctcatcatggagtacgtcgacgaggcc 254
Query: 255 ttcgacgg 262
||||||||
Sbjct: 255 ttcgacgg 262
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 418 tggcgctgctggaggcgcagctcgagggaaagaggttcttcgccggcgac 467
||||||||||||| | ||||||| |||| ||||||||||| | |||||||
Sbjct: 418 tggcgctgctggaagggcagctccaggggaagaggttctttggcggcgac 467
>gb|BF253797.2|BF253797 HVSMEf0002C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C11f, mRNA sequence
Length = 824
Score = 79.8 bits (40), Expect = 1e-013
Identities = 185/232 (79%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| |||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 43 gccggtgaggctcatcggcgccttcggcagcccggtcgtgcaccgcgcggagctggccct 102
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||| ||||||||| || || |||||||||
Sbjct: 103 gcgcctcaagggcgtcccctacgagctcatcgaggaggacct---cgacaacaagagcga 159
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || ||||||||||||||||| || |
Sbjct: 160 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacggacaccg 219
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
| ||||| | || || |||||||||| | ||||| ||||||||||||||
Sbjct: 220 ct---ccatcccggactcgctcgtcatcgtcaagtacatcgacgaggccttc 268
>gb|BF258539.2|BF258539 HVSMEf0016A04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016A04f, mRNA sequence
Length = 854
Score = 79.8 bits (40), Expect = 1e-013
Identities = 185/232 (79%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| |||||| || |||||||||| || | |||||||||| ||| ||
Sbjct: 24 gccggtgaggctcatcggcgcctgcggcagcccggtcgtgcaccgcgcggagctggccct 83
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||| ||||||||| | || |||||||||
Sbjct: 84 gcgcctcaagggcgtcccctacgagctcatcgaggaggacct---caacaacaagagcga 140
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| ||||||||||| ||||||| || |||||||||||||||||| |
Sbjct: 141 gctgctgctcacgcacaaccccgtccacaagaccgtccccgtgctcctccacggcca--- 197
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
||| ||||| | || || |||||||||| ||||||| ||||||||||||||
Sbjct: 198 ccgctccatcccggactcgctcgtcatcgtcgagtacatcgacgaggccttc 249
Score = 50.1 bits (25), Expect = 1e-004
Identities = 45/51 (88%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 421 cgctgctggaggcgcagctc---gagggaaagaggttcttcgccggcgaca 468
||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 413 cgctgctggaggcgcagctgccggaggggaagaggttcttcggcggcgaca 463
>gb|BF623386.2|BF623386 HVSMEa0016I09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016I09f, mRNA sequence
Length = 816
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 181 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 240
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 241 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 297
Query: 252 gcct 255
||||
Sbjct: 298 gcct 301
>gb|BF257698.2|BF257698 HVSMEf0013K02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013K02f, mRNA sequence
Length = 492
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 179 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 238
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 239 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 295
Query: 252 gcct 255
||||
Sbjct: 296 gcct 299
>gb|BI950533.1|BI950533 HVSMEl0021D14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021D14f, mRNA sequence
Length = 870
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 176 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 235
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 236 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 292
Query: 252 gcct 255
||||
Sbjct: 293 gcct 296
>gb|BQ465287.1|BQ465287 HU03D01r HU Hordeum vulgare subsp. vulgare cDNA clone HU03D01
5-PRIME, mRNA sequence
Length = 607
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 191 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 250
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 251 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 307
Query: 252 gcct 255
||||
Sbjct: 308 gcct 311
>gb|CA004703.1|CA004703 HS18G22r HS Hordeum vulgare subsp. vulgare cDNA clone HS18G22
5-PRIME, mRNA sequence
Length = 343
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 193 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 252
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 253 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 309
Query: 252 gcct 255
||||
Sbjct: 310 gcct 313
>gb|CA007742.1|CA007742 HU08O02r HU Hordeum vulgare subsp. vulgare cDNA clone HU08O02
5-PRIME, mRNA sequence
Length = 604
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 201 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 260
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 261 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 317
Query: 252 gcct 255
||||
Sbjct: 318 gcct 321
>gb|CA012539.1|CA012539 HT05L11r HT Hordeum vulgare subsp. vulgare cDNA clone HT05L11
5-PRIME, mRNA sequence
Length = 602
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 177 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 236
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 237 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 293
Query: 252 gcct 255
||||
Sbjct: 294 gcct 297
>gb|CA017465.1|CA017465 HV05E15r HV Hordeum vulgare subsp. vulgare cDNA clone HV05E15
5-PRIME, mRNA sequence
Length = 500
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 187 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 246
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 247 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 303
Query: 252 gcct 255
||||
Sbjct: 304 gcct 307
>gb|CA017476.1|CA017476 HV05F04r HV Hordeum vulgare subsp. vulgare cDNA clone HV05F04
5-PRIME, mRNA sequence
Length = 500
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 187 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 246
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 247 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 303
Query: 252 gcct 255
||||
Sbjct: 304 gcct 307
>gb|CA019652.1|CA019652 HV12K19r HV Hordeum vulgare subsp. vulgare cDNA clone HV12K19
5-PRIME, mRNA sequence
Length = 433
Score = 75.8 bits (38), Expect = 2e-012
Identities = 103/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 187 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 246
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||||||
Sbjct: 247 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacgag 303
Query: 252 gcct 255
||||
Sbjct: 304 gcct 307
>gb|BG299389.1|BG299389 HVSMEa0019L19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019L19f, mRNA sequence
Length = 624
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 175 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 234
Query: 197 c 197
|
Sbjct: 235 c 235
>gb|BF627874.2|BF627874 HVSMEb0006C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006C01f, mRNA sequence
Length = 783
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 118 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 177
Query: 197 c 197
|
Sbjct: 178 c 178
>gb|BF256380.2|BF256380 HVSMEf0009H03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009H03f, mRNA sequence
Length = 257
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 140 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 199
Query: 197 c 197
|
Sbjct: 200 c 200
>gb|BF259078.2|BF259078 HVSMEf0017J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017J19f, mRNA sequence
Length = 834
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 119 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 178
Query: 197 c 197
|
Sbjct: 179 c 179
>gb|BG368894.1|BG368894 HVSMEi0021D06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D06f, mRNA sequence
Length = 793
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 136 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 195
Query: 197 c 197
|
Sbjct: 196 c 196
>gb|BE214207.2|BE214207 HV_CEb0002K18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0002K18f, mRNA sequence
Length = 717
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 128 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 187
Query: 197 c 197
|
Sbjct: 188 c 188
>gb|BM375338.2|BM375338 EBem06_SQ003_A18_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_A18 5', mRNA sequence
Length = 480
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 142 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 201
Query: 197 c 197
|
Sbjct: 202 c 202
>gb|CA022668.1|CA022668 HZ44A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44A05
5-PRIME, mRNA sequence
Length = 588
Score = 73.8 bits (37), Expect = 9e-012
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
|||| |||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||
Sbjct: 147 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctcatcca 206
Query: 197 c 197
|
Sbjct: 207 c 207
>gb|BF255189.1|BF255189 HVSMEf0006D04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D04f, mRNA sequence
Length = 617
Score = 71.9 bits (36), Expect = 4e-011
Identities = 184/232 (79%), Gaps = 6/232 (2%)
Strand = Plus / Minus
Query: 26 gccggtgaagctgatcggcttcttcggcagcccgtacgcgttccgcgcggaggcggcgct 85
|||||||| ||| |||||| ||||||||||||| || | |||||||||| ||| ||
Sbjct: 575 gccggtgaggctcatcggcgccttcggcagcccggtcgtgcaccgcgcggagctggccct 516
Query: 86 gtgcctgaaaggcgtgccgtacgagctgatcctggaggacctgttcggcagcaagagcga 145
| |||| || ||||| || |||||||| ||| ||||||||| | || |||||||||
Sbjct: 515 gcgcctcaagggcgtcccctacgagctcatcgaggaggacct---caacaacaagagcga 459
Query: 146 gctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggcgacgg 205
||| |||||| |||||| |||| ||||||| || ||||||||||||||||| || |
Sbjct: 458 gctgctgctcacgcacaacaccgtccacaagaccgtcaccgtgctcctccacggccaccg 399
Query: 206 ccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttc 257
| ||||| | || || |||||||||| ||||||| ||||||||||||||
Sbjct: 398 ct---ccatcccggactcgctcgtcatcgtcgagtacatcgacgaggccttc 350
Score = 48.1 bits (24), Expect = 5e-004
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Minus
Query: 421 cgctgctggaggcgcagct---cgagggaaagaggttcttcgccggcgac 467
||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct: 276 cgctgctggaggcgcagctgccggaggggaagaggttcttcggcggcgac 227
>gb|BF256426.3|BF256426 HVSMEf0009J14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009J14f, mRNA sequence
Length = 876
Score = 69.9 bits (35), Expect = 1e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||| |||| | ||||||| ||||||||||||||||||||||||
Sbjct: 128 caagggcgagctcctcctccgctacaacccggtgcacaagaaggtgcccgtgctc 182
>gb|AV924070.1|AV924070 AV924070 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11d13 5', mRNA sequence
Length = 495
Score = 67.9 bits (34), Expect = 6e-010
Identities = 102/124 (82%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 147 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 206
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | |||||||| |||||
Sbjct: 207 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtccacgag 263
Query: 252 gcct 255
||||
Sbjct: 264 gcct 267
>gb|BM816911.1|BM816911 HB106C10_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106C10_SK.ab1 similar to Glutathione
transferase,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 924
Score = 67.9 bits (34), Expect = 6e-010
Identities = 102/124 (82%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| |||||| | |||||| |||||||||| | | |||||||||
Sbjct: 200 ggcaacaagagcgagctgctgctcgcctccaacccggtgcacaagatgatccccgtgctc 259
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | |||||||| |||||
Sbjct: 260 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtccacgag 316
Query: 252 gcct 255
||||
Sbjct: 317 gcct 320
>gb|BF624808.3|BF624808 HVSMEa0017M20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017M20f, mRNA sequence
Length = 847
Score = 63.9 bits (32), Expect = 9e-009
Identities = 67/78 (85%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 176 gaaggtgcccgtgctcctccacggcgacggccgggccatctccgagtccctcgtcatcgc 235
|||||||||||||||| ||||||||| |||| ||| || ||||||| || |||||||
Sbjct: 231 gaaggtgcccgtgctcatccacggcg---gccgcgccgtcgccgagtctctggtcatcgt 287
Query: 236 cgagtacgtcgacgaggc 253
|||||||||||||||||
Sbjct: 288 ggagtacgtcgacgaggc 305
>gb|BF257083.2|BF257083 HVSMEf0011M23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011M23f, mRNA sequence
Length = 585
Score = 63.9 bits (32), Expect = 9e-009
Identities = 67/78 (85%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 176 gaaggtgcccgtgctcctccacggcgacggccgggccatctccgagtccctcgtcatcgc 235
|||||||||||||||| ||||||||| |||| ||| || ||||||| || |||||||
Sbjct: 242 gaaggtgcccgtgctcatccacggcg---gccgcgccgtcgccgagtctctggtcatcgt 298
Query: 236 cgagtacgtcgacgaggc 253
|||||||||||||||||
Sbjct: 299 ggagtacgtcgacgaggc 316
>gb|BF255920.2|BF255920 HVSMEf0008D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008D10f, mRNA sequence
Length = 447
Score = 63.9 bits (32), Expect = 9e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 142 gcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccac 197
|||||||||| |||| | ||||||| |||||||| ||||||||||||||| |||||
Sbjct: 134 gcgagctcctcctccgctacaacccggtgcacaaaaaggtgcccgtgctcatccac 189
>gb|BM369733.2|BM369733 EBem07_SQ004_H07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_H07 5', mRNA sequence
Length = 484
Score = 61.9 bits (31), Expect = 3e-008
Identities = 96/117 (82%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 137 caagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctcca 196
||||||||| ||||||||| | |||||| |||||||||||||| |||||||| ||||
Sbjct: 178 caagagcgacctcctgctcagctccaacccggtgcacaagaaggtccccgtgctgatcca 237
Query: 197 cggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggc 253
|||||||||| | | | |||||| |||||| || ||||||||||||||||||
Sbjct: 238 ---cgacggccggccggtgtgcgagtcgctcgtcgtcctcgagtacgtcgacgaggc 291
>gb|BF622044.2|BF622044 HVSMEa0001J20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001J20f, mRNA sequence
Length = 699
Score = 60.0 bits (30), Expect = 1e-007
Identities = 101/124 (81%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| ||||| | |||||| |||||||||| | | |||||||||
Sbjct: 175 ggcaacaagagcgagctgttgctcgcctccaacccggtgcacaagatgatccccgtgctc 234
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| |||||| | ||||||||||| ||
Sbjct: 235 ctgcacc---acggcaggcccgtctccgagtccctcatcatcgtccagtacgtcgacaag 291
Query: 252 gcct 255
||||
Sbjct: 292 gcct 295
>gb|BF259210.2|BF259210 HVSMEf0018C22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0018C22f, mRNA sequence
Length = 719
Score = 60.0 bits (30), Expect = 1e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 141 agcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggc 200
|||||||| ||||| | ||||||||| | ||||||| |||||| |||||| | |||||
Sbjct: 126 agcgagctgctgctgaagcacaaccccatccacaagacggtgccggtgctcttacacggt 185
Query: 201 gacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttcgac 260
||| | | ||| ||| ||||||||| |||||| ||| || || |||||||||||||||
Sbjct: 186 gaccggcccgccgtcttagagtccctcctcatcgtcgaatatgtggacgaggccttcgac 245
Query: 261 gg 262
||
Sbjct: 246 gg 247
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 418 tggcgctgctggaggcgcagctcgagggaaagaggttcttcgccggcgac 467
|||||||||| ||||||| ||| |||| ||| |||||||||||||||||
Sbjct: 403 tggcgctgctagaggcgcggctgcaggggaagcggttcttcgccggcgac 452
Score = 44.1 bits (22), Expect = 0.008
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 27 ccggtgaagctgatcggcttcttcggcagcccgt 60
||||||||||| |||||| ||||||||||||||
Sbjct: 15 ccggtgaagctcatcggcgccttcggcagcccgt 48
>gb|BF267193.3|BF267193 HV_CEa0017D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017D12f, mRNA sequence
Length = 519
Score = 60.0 bits (30), Expect = 1e-007
Identities = 101/124 (81%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 132 ggcagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctc 191
|||| |||||||||||| ||||| | |||||| |||||||||| | | |||||||||
Sbjct: 165 ggcaacaagagcgagctgttgctcgcctccaacccggtgcacaagatgatccccgtgctc 224
Query: 192 ctccacggcgacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgag 251
|| ||| ||||| || || |||||||||||||| || ||| | ||||||||||||||
Sbjct: 225 ctgcacc---acggcaggcccgtctccgagtccctcatcttcgtccagtacgtcgacgag 281
Query: 252 gcct 255
||||
Sbjct: 282 gcct 285
>gb|BQ763720.1|BQ763720 EBro03_SQ005_A10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_A10 5', mRNA sequence
Length = 549
Score = 60.0 bits (30), Expect = 1e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 141 agcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcctccacggc 200
|||||||| ||||| | ||||||||| | ||||||| |||||| |||||| | |||||
Sbjct: 166 agcgagctgctgctgaagcacaaccccatccacaagacggtgccggtgctcttacacggt 225
Query: 201 gacggccgggccatctccgagtccctcgtcatcgccgagtacgtcgacgaggccttcgac 260
||| | | ||| ||| ||||||||| |||||| ||| || || |||||||||||||||
Sbjct: 226 gaccggcccgccgtcttagagtccctcctcatcgtcgaatatgtggacgaggccttcgac 285
Query: 261 gg 262
||
Sbjct: 286 gg 287
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 418 tggcgctgctggaggcgcagctcgagggaaagaggttcttcgccggcgac 467
|||||||||| ||||||| ||| |||| ||| |||||||||||||||||
Sbjct: 444 tggcgctgctagaggcgcggctgcaggggaagcggttcttcgccggcgac 493
Score = 44.1 bits (22), Expect = 0.008
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 27 ccggtgaagctgatcggcttcttcggcagcccgt 60
||||||||||| |||||| ||||||||||||||
Sbjct: 55 ccggtgaagctcatcggcgccttcggcagcccgt 88
>gb|BU989585.1|BU989585 HF22C07r HF Hordeum vulgare subsp. vulgare cDNA clone HF22C07
5-PRIME, mRNA sequence
Length = 599
Score = 58.0 bits (29), Expect = 5e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 161 caaccccgtgcacaagaaggtgcccgtgctcctccac 197
|||||| |||||||||||||||||||||||| |||||
Sbjct: 281 caacccggtgcacaagaaggtgcccgtgctcatccac 317
>gb|BE411006.1|BE411006 ISC001.D03F990519 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC001.D03, mRNA sequence
Length = 439
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgct 190
||||||||||||||||||||||| ||||||||
Sbjct: 135 cacaaccccgtgcacaagaaggtccccgtgct 166
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 227 cgtcatcgccgagtacgtcgacgaggc 253
|||||||| ||||| ||||||||||||
Sbjct: 200 cgtcatcgtcgagttcgtcgacgaggc 226
>gb|BF623987.2|BF623987 HVSMEa0008F14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008F14f, mRNA sequence
Length = 507
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 134 cagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcct 193
|||||||||||| ||||| ||| | ||||||||||||| ||||| |||||||||||
Sbjct: 187 cagcaagagcgacctcctcctcgcctccaaccccgtgcacgccaaggtccccgtgctcct 246
Query: 194 ccacggcg 201
||||||||
Sbjct: 247 ccacggcg 254
>gb|BI953615.1|BI953615 HVSMEm0013J07f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013J07f, mRNA sequence
Length = 642
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 134 cagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcct 193
|||||||||||| ||||| ||| | ||||||||||||| ||||| |||||||||||
Sbjct: 140 cagcaagagcgacctcctcctcgcctccaaccccgtgcacgccaaggtccccgtgctcct 199
Query: 194 ccacggcg 201
||||||||
Sbjct: 200 ccacggcg 207
>gb|BI954235.1|BI954235 HVSMEm0016M03f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016M03f, mRNA sequence
Length = 682
Score = 56.0 bits (28), Expect = 2e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 134 cagcaagagcgagctcctgctccaccacaaccccgtgcacaagaaggtgcccgtgctcct 193
|||||||||||| ||||| ||| | ||||||||||||| ||||| |||||||||||
Sbjct: 144 cagcaagagcgacctcctcctcgcctccaaccccgtgcacgccaaggtccccgtgctcct 203
Query: 194 ccacggcg 201
||||||||
Sbjct: 204 ccacggcg 211
>gb|BE215757.1|BE215757 HV_CEb0008G14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008G14f, mRNA sequence
Length = 507
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgct 190
||||||||||||||||||||||| ||||||||
Sbjct: 153 cacaaccccgtgcacaagaaggtccccgtgct 184
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 227 cgtcatcgccgagtacgtcgacgaggc 253
|||||||| ||||| ||||||||||||
Sbjct: 218 cgtcatcgtcgagttcgtcgacgaggc 244
>gb|BE216520.1|BE216520 HV_CEb0010L11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010L11f, mRNA sequence
Length = 909
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgct 190
||||||||||||||||||||||| ||||||||
Sbjct: 153 cacaaccccgtgcacaagaaggtccccgtgct 184
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 227 cgtcatcgccgagtacgtcgacgaggc 253
|||||||| ||||| ||||||||||||
Sbjct: 218 cgtcatcgtcgagttcgtcgacgaggc 244
>gb|BF065573.1|BF065573 HV_CEb0012M23f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012M23f, mRNA sequence
Length = 581
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 cacaaccccgtgcacaagaaggtgcccgtgct 190
||||||||||||||||||||||| ||||||||
Sbjct: 154 cacaaccccgtgcacaagaaggtccccgtgct 185
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,863
Number of Sequences: 312970
Number of extensions: 143863
Number of successful extensions: 42988
Number of sequences better than 0.5: 178
Number of HSP's better than 0.5 without gapping: 176
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 42566
Number of HSP's gapped (non-prelim): 374
length of query: 911
length of database: 175,134,539
effective HSP length: 19
effective length of query: 892
effective length of database: 169,188,109
effective search space: 150915793228
effective search space used: 150915793228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)