BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm librar... 220 3e-056
gb|AV922011.1|AV922011 AV922011 K. Sato unpublished cDNA li... 212 8e-054
gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. v... 212 8e-054
gb|CB874745.1|CB874745 HX06D05w HX Hordeum vulgare subsp. v... 212 8e-054
gb|CB875451.1|CB875451 HX08F13w HX Hordeum vulgare subsp. v... 212 8e-054
gb|AV919525.1|AV919525 AV919525 K. Sato unpublished cDNA li... 192 7e-048
gb|BQ762687.1|BQ762687 EBro02_SQ004_B20_R root, 3 week, hyd... 170 3e-041
gb|BQ762688.1|BQ762688 EBro02_SQ004_B21_R root, 3 week, hyd... 170 3e-041
gb|BI948007.1|BI948007 HVSMEl0007M23f Hordeum vulgare spike... 161 3e-038
gb|BQ468560.1|BQ468560 HM01J16T HM Hordeum vulgare subsp. v... 147 4e-034
gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. v... 119 9e-026
gb|BJ465830.1|BJ465830 BJ465830 K. Sato unpublished cDNA li... 117 3e-025
gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-a... 109 9e-023
gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA li... 109 9e-023
gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA li... 109 9e-023
gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA li... 109 9e-023
gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA li... 109 9e-023
gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. v... 109 9e-023
gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no... 109 9e-023
gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. v... 109 9e-023
gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgar... 109 9e-023
gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgar... 109 9e-023
gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulg... 109 9e-023
gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subs... 103 5e-021
gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA li... 100 8e-020
gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA li... 100 8e-020
gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. v... 100 8e-020
gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA li... 96 1e-018
gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no... 96 1e-018
gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthe... 96 1e-018
gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-a... 94 5e-018
gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. v... 90 8e-017
gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA li... 82 2e-014
gb|BQ468025.1|BQ468025 HR01L03r HR Hordeum vulgare subsp. v... 82 2e-014
gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. v... 82 2e-014
gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. v... 82 2e-014
gb|CA006166.1|CA006166 HU05B18u HU Hordeum vulgare subsp. v... 82 2e-014
gb|CA010273.1|CA010273 HT10P01u HT Hordeum vulgare subsp. v... 82 2e-014
gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA li... 78 3e-013
gb|BJ476688.1|BJ476688 BJ476688 K. Sato unpublished cDNA li... 76 1e-012
gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA li... 74 5e-012
gb|BI777816.2|BI777816 EBro08_SQ002_D01_R root, 3 week, dro... 72 2e-011
gb|CA010063.1|CA010063 HT11L04u HT Hordeum vulgare subsp. v... 70 7e-011
gb|BQ761897.1|BQ761897 EBpi01_SQ005_O05_R pistil, 1 DPA, no... 68 3e-010
gb|CB859612.1|CB859612 HI11A04w HI Hordeum vulgare subsp. v... 64 5e-009
gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-a... 56 1e-006
gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA li... 56 1e-006
gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. v... 56 1e-006
gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA li... 48 3e-004
gb|BQ458960.1|BQ458960 HA02L12r HA Hordeum vulgare subsp. v... 42 0.017
gb|BQ656648.1|BQ656648 HA02L12u HA Hordeum vulgare subsp. v... 42 0.017
gb|BU976195.1|BU976195 HA03F01r HA Hordeum vulgare subsp. v... 42 0.017
gb|BU976196.1|BU976196 HA03F01u HA Hordeum vulgare subsp. v... 42 0.017
gb|AV917709.1|AV917709 AV917709 K. Sato unpublished cDNA li... 40 0.066
gb|AJ434040.1|AJ434040 AJ434040 S00002 Hordeum vulgare subs... 40 0.066
gb|AJ434167.1|AJ434167 AJ434167 S00002 Hordeum vulgare subs... 40 0.066
gb|BQ663243.1|BQ663243 HU01K11w HU Hordeum vulgare subsp. v... 40 0.066
gb|BQ665238.1|BQ665238 HX02L02u HX Hordeum vulgare subsp. v... 40 0.066
gb|BQ762079.1|BQ762079 EBpi01_SQ005_B22_R pistil, 1 DPA, no... 40 0.066
gb|BU976257.1|BU976257 HA03G15r HA Hordeum vulgare subsp. v... 40 0.066
gb|CA016318.1|CA016318 HV09F08u HV Hordeum vulgare subsp. v... 40 0.066
gb|BE411645.1|BE411645 ISC007.G06F990714 ITEC ISC Barley Le... 38 0.26
gb|BE411852.1|BE411852 ISC009.H11F990902 ITEC ISC Barley Le... 38 0.26
gb|BE411941.1|BE411941 ISC010.H04F991005 ITEC ISC Barley Le... 38 0.26
gb|AL450974.1|AL450974 AL450974 Hordeum vulgare Barke etiol... 38 0.26
gb|AL500280.1|AL500280 AL500280 Hordeum vulgare Barke etiol... 38 0.26
gb|BI776425.1|BI776425 EBpi05_SQ001_E12_R pistil, 8 DPA, no... 38 0.26
gb|AW982183.2|AW982183 HVSMEg0002C11f Hordeum vulgare pre-a... 38 0.26
gb|BF259567.3|BF259567 HVSMEf0019K20f Hordeum vulgare seedl... 38 0.26
gb|BE455205.3|BE455205 HVSMEh0096J10f Hordeum vulgare 5-45 ... 38 0.26
gb|BG416695.2|BG416695 HVSMEk0014C10f Hordeum vulgare testa... 38 0.26
gb|BG417130.2|BG417130 HVSMEk0016G04f Hordeum vulgare testa... 38 0.26
gb|BM100777.1|BM100777 EBpi01_SQ001_N03_R pistil, 1 DPA, no... 38 0.26
gb|BM368148.1|BM368148 EBed01_SQ002_F01_R endosperm, 6 DPA,... 38 0.26
gb|BM370022.1|BM370022 EBro08_SQ002_L12_R root, 3 week, dro... 38 0.26
gb|BM374916.1|BM374916 EBma05_SQ003_I16_R maternal, 12 DPA,... 38 0.26
gb|BM377038.1|BM377038 EBem05_SQ003_P01_R embryo, 14 DPA, n... 38 0.26
gb|AV924277.1|AV924277 AV924277 K. Sato unpublished cDNA li... 38 0.26
gb|AV929372.1|AV929372 AV929372 K. Sato unpublished cDNA li... 38 0.26
gb|BM444348.1|BM444348 EBem09_SQ004_O07_R embryo, 1 Day ger... 38 0.26
gb|BM444890.1|BM444890 EBem09_SQ006_M21_R embryo, 1 Day ger... 38 0.26
gb|AJ435476.1|AJ435476 AJ435476 S00002 Hordeum vulgare subs... 38 0.26
gb|BQ657209.1|BQ657209 HA09D15u HA Hordeum vulgare subsp. v... 38 0.26
gb|BM097547.2|BM097547 EBem04_SQ001_P12_R embryo, 12 DPA, n... 38 0.26
gb|BM369675.2|BM369675 EBem07_SQ004_E18_R embryo, 28 DPA, n... 38 0.26
gb|BM443670.2|BM443670 EBem09_SQ001_B18_R embryo, 1 Day ger... 38 0.26
gb|BM373864.2|BM373864 EBma03_SQ002_P08_R maternal, 8 DPA, ... 38 0.26
gb|BM374533.2|BM374533 EBpi03_SQ003_O05_R pistil, 4 DPA, no... 38 0.26
gb|BI778422.2|BI778422 EBro07_SQ003_E04_R root, 3 week, red... 38 0.26
gb|BQ762322.1|BQ762322 EBro01_SQ005_P10_R root, 3 week, hyd... 38 0.26
gb|BQ762970.1|BQ762970 EBro02_SQ006_P18_R root, 3 week, hyd... 38 0.26
gb|BQ764740.1|BQ764740 EBca01_SQ004_C22_R carpel, pre-anthe... 38 0.26
gb|BQ767289.1|BQ767289 EBro08_SQ008_A18_R root, 3 week, dro... 38 0.26
gb|BQ767912.1|BQ767912 EBro08_SQ010_N01_R root, 3 week, dro... 38 0.26
gb|BU972328.1|BU972328 HB21F10r BC Hordeum vulgare subsp. v... 38 0.26
gb|BU978263.1|BU978263 HA12N12r HA Hordeum vulgare subsp. v... 38 0.26
gb|BU978264.1|BU978264 HA12N12u HA Hordeum vulgare subsp. v... 38 0.26
gb|BU988419.1|BU988419 HF17J10r HF Hordeum vulgare subsp. v... 38 0.26
gb|BU989797.1|BU989797 HF22L16r HF Hordeum vulgare subsp. v... 38 0.26
gb|CA000548.1|CA000548 HS07L05u HS Hordeum vulgare subsp. v... 38 0.26
gb|CA002500.1|CA002500 HS07L05r HS Hordeum vulgare subsp. v... 38 0.26
gb|CB877042.1|CB877042 HP03F21T HP Hordeum vulgare subsp. v... 38 0.26
gb|CV056769.1|CV056769 BNEL20d4 Barley EST endosperm librar... 38 0.26
gb|CV062258.1|CV062258 BNEL78a7 Barley EST endosperm librar... 38 0.26
emb|AJ001161.1|HVJ001161 Hordeum vulgare S28 ribosomal protein 38 0.26
>gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67b5 5' similar to TPR1, mRNA
sequence
Length = 627
Score = 220 bits (111), Expect = 3e-056
Identities = 260/310 (83%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 543 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 484
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 483 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 424
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 423 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 364
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
|||||||||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 363 ctctctttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 304
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |||
Sbjct: 303 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctga 244
Query: 477 taagtttcca 486
||||||||||
Sbjct: 243 taagtttcca 234
>gb|AV922011.1|AV922011 AV922011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19g10 3', mRNA sequence
Length = 589
Score = 212 bits (107), Expect = 8e-054
Identities = 259/310 (83%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 191 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 250
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 251 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 310
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 311 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 370
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 371 ctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 430
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |||
Sbjct: 431 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctga 490
Query: 477 taagtttcca 486
||||||||||
Sbjct: 491 taagtttcca 500
>gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. vulgare cDNA clone HI11L23
3-PRIME, mRNA sequence
Length = 570
Score = 212 bits (107), Expect = 8e-054
Identities = 259/310 (83%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 141 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 200
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 201 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 260
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 261 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 320
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 321 ctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 380
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |||
Sbjct: 381 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctga 440
Query: 477 taagtttcca 486
||||||||||
Sbjct: 441 taagtttcca 450
>gb|CB874745.1|CB874745 HX06D05w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D05
3-PRIME, mRNA sequence
Length = 595
Score = 212 bits (107), Expect = 8e-054
Identities = 259/310 (83%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 171 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 230
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 231 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 290
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 291 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 350
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 351 ctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 410
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |||
Sbjct: 411 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctga 470
Query: 477 taagtttcca 486
||||||||||
Sbjct: 471 taagtttcca 480
>gb|CB875451.1|CB875451 HX08F13w HX Hordeum vulgare subsp. vulgare cDNA clone HX08F13
3-PRIME, mRNA sequence
Length = 595
Score = 212 bits (107), Expect = 8e-054
Identities = 259/310 (83%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 171 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 230
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 231 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 290
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 291 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 350
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 351 ctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 410
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |||
Sbjct: 411 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctga 470
Query: 477 taagtttcca 486
||||||||||
Sbjct: 471 taagtttcca 480
>gb|AV919525.1|AV919525 AV919525 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6g21 3', mRNA sequence
Length = 572
Score = 192 bits (97), Expect = 7e-048
Identities = 256/310 (82%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| |||||||||||| |||| ||| |||| |||
Sbjct: 125 gtctacttcatctggactatccctgcgctcacgagcttctgggtcttttgcttcacgccg 184
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 185 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 244
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| |||
Sbjct: 245 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgn 304
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | || |
Sbjct: 305 ctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaata 364
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| |||
Sbjct: 365 catctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttnctga 424
Query: 477 taagtttcca 486
||||||||||
Sbjct: 425 taagtttcca 434
>gb|BQ762687.1|BQ762687 EBro02_SQ004_B20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_B20 5', mRNA sequence
Length = 380
Score = 170 bits (86), Expect = 3e-041
Identities = 170/198 (85%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 212 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 153
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 152 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 93
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 92 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 33
Query: 357 ctctctttcagttcctcc 374
||||| ||||||||||||
Sbjct: 32 ctctccttcagttcctcc 15
>gb|BQ762688.1|BQ762688 EBro02_SQ004_B21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_B21 5', mRNA sequence
Length = 396
Score = 170 bits (86), Expect = 3e-041
Identities = 170/198 (85%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 228 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 169
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 168 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 109
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 108 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgt 49
Query: 357 ctctctttcagttcctcc 374
||||| ||||||||||||
Sbjct: 48 ctctccttcagttcctcc 31
>gb|BI948007.1|BI948007 HVSMEl0007M23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0007M23f, mRNA sequence
Length = 599
Score = 161 bits (81), Expect = 3e-038
Identities = 194/232 (83%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 298 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 239
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| | ||||||||| || ||||| || | ||| |||| ||||||
Sbjct: 238 gggttcttgagatgctcttgcgcagccttgggattctcntggaaatcaatcaacacctgc 179
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||| | || || ||||||||||| ||||| |||||||| ||||| |||||| ||||
Sbjct: 178 cgcatcacagggtccgtcaggatgttatggatttcagggtcatgcatagctttgccctgt 119
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatct 408
||||| |||||||||||| |||| ||||||||| |||||||| ||||||
Sbjct: 118 ctctccttcagttcctccggggtgagatcgcctctgttcgccttgttgatct 67
>gb|BQ468560.1|BQ468560 HM01J16T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J16
5-PRIME, mRNA sequence
Length = 603
Score = 147 bits (74), Expect = 4e-034
Identities = 149/174 (85%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 537 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 478
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| ||| ||||||||||| || |||||||| | ||| |||| ||||||
Sbjct: 477 gggttcttgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgc 418
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||| | || || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 417 cgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttg 364
>gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. vulgare cDNA clone HB08B02
5-PRIME, mRNA sequence
Length = 579
Score = 119 bits (60), Expect = 9e-026
Identities = 146/175 (83%)
Strand = Plus / Minus
Query: 312 gtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttcagttcc 371
||||||||||||||||| |||||||| ||||| |||||| ||||||||| |||||||||
Sbjct: 544 gtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctccttcagttcc 485
Query: 372 tcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctccttacacca 431
||| |||| ||||||||| |||||||| ||||||| | || ||| ||| ||||||||
Sbjct: 484 tccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctctttacacca 425
Query: 432 tcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcca 486
|| || | ||||||||| |||| ||||||| ||||| | |||||||||||||
Sbjct: 424 tcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtttcca 370
>gb|BJ465830.1|BJ465830 BJ465830 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i08 3', mRNA sequence
Length = 246
Score = 117 bits (59), Expect = 3e-025
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
|||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||
Sbjct: 125 gtctacttcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccg 184
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| ||| |||||||||||
Sbjct: 185 gggttcttgagatgctcctgcgcagcc 211
>gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003B23f, mRNA sequence
Length = 1024
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 482 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 423
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 422 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 363
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 362 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 303
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 302 cctgttggccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 243
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 242 attagggtcaagctttaacccagcctggtaagtttcca 205
>gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 3', mRNA sequence
Length = 599
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 157 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 216
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 217 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 276
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 277 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 336
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 337 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 396
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 397 attagggtcaagctttaacccagcctggtaagtttcca 434
>gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f01 3', mRNA sequence
Length = 663
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 133 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 192
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 193 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 252
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 253 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 312
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 313 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 372
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 373 attagggtcaagctttaacccagcctggtaagtttcca 410
>gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 3', mRNA sequence
Length = 704
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 347 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 406
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 407 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 466
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 467 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 526
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 527 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 586
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 587 attagggtcaagctttaacccagcctggtaagtttcca 624
>gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38l14 3', mRNA sequence
Length = 680
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 345 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 404
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 405 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 464
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 465 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 524
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 525 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 584
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 585 attagggtcaagctttaacccagcctggtaagtttcca 622
>gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
5-PRIME, mRNA sequence
Length = 631
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 404 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 345
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 344 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 285
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 284 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 225
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 224 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 165
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 164 attagggtcaagctttaacccagcctggtaagtttcca 127
>gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_E07 5', mRNA sequence
Length = 620
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 414 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 355
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 354 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 295
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 294 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 235
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 234 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 175
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 174 attagggtcaagctttaacccagcctggtaagtttcca 137
>gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A05
5-PRIME, mRNA sequence
Length = 629
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 404 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 345
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 344 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 285
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 284 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 225
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 224 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 165
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 164 attagggtcaagctttaacccagcctggtaagtttcca 127
>gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J245 5-PRIME, mRNA sequence
Length = 793
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 696 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 637
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 636 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 577
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 576 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 517
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 516 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 457
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 456 attagggtcaagctttaacccagcctggtaagtttcca 419
>gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B085 5-PRIME, mRNA sequence
Length = 744
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 696 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 637
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 636 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 577
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 576 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 517
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 516 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 457
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 456 attagggtcaagctttaacccagcctggtaagtttcca 419
>gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F0111 5-PRIME, mRNA sequence
Length = 877
Score = 109 bits (55), Expect = 9e-023
Identities = 222/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 660 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 601
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 600 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 541
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 540 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 481
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 480 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 421
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 420 attagggtcaagctttaacccagcctggtaagtttcca 383
>gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G02F1, mRNA sequence
Length = 543
Score = 103 bits (52), Expect = 5e-021
Identities = 219/275 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 275 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 216
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 215 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 156
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 155 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 96
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 95 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 36
Query: 449 tttcgggncatgctttaggccagcttgataagttt 483
|| ||| || |||||| ||||| || |||||||
Sbjct: 35 attagggtcaagctttaacccagcctggtaagttt 1
>gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20p01 3', mRNA sequence
Length = 682
Score = 99.6 bits (50), Expect = 8e-020
Identities = 205/257 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 343 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 402
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 403 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 462
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 463 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 522
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 523 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 582
Query: 449 tttcgggncatgcttta 465
|| ||| || ||||||
Sbjct: 583 attagggtcaagcttta 599
>gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37e05 3', mRNA sequence
Length = 434
Score = 99.6 bits (50), Expect = 8e-020
Identities = 205/257 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 173 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 232
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 233 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 292
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 293 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 352
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 353 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 412
Query: 449 tttcgggncatgcttta 465
|| ||| || ||||||
Sbjct: 413 attagggtcaagcttta 429
>gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
3-PRIME, mRNA sequence
Length = 622
Score = 99.6 bits (50), Expect = 8e-020
Identities = 205/257 (79%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 362 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 421
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 422 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 481
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 482 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 541
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 542 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 601
Query: 449 tttcgggncatgcttta 465
|| ||| || ||||||
Sbjct: 602 attagggtcaagcttta 618
>gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23m02 3', mRNA sequence
Length = 617
Score = 95.6 bits (48), Expect = 1e-018
Identities = 183/228 (80%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 347 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 406
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 407 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 466
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 467 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 526
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaag 436
||| | |||||| ||||||| | |||||||||||||| ||||||||
Sbjct: 527 cctgttagccttgttgatctgctgaacacacctccttatgccatcaag 574
>gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B02 5', mRNA sequence
Length = 445
Score = 95.6 bits (48), Expect = 1e-018
Identities = 220/278 (79%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| || || || |||| |||||| |||
Sbjct: 414 gagcttttggatcttctgtgccactccagggtctttcagatgatcctgagcagccntagg 355
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 354 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 295
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 294 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 235
Query: 389 tctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtt 448
||| | |||||| ||||||| | |||||||||||||| |||||||| | ||||||||
Sbjct: 234 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 175
Query: 449 tttcgggncatgctttaggccagcttgataagtttcca 486
|| ||| || |||||| ||||| || ||||||||||
Sbjct: 174 attagggtcaagctttaacccagcctggtaagtttcca 137
>gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I16 5', mRNA sequence
Length = 498
Score = 95.6 bits (48), Expect = 1e-018
Identities = 175/218 (80%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 276 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 335
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 336 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtnaggatgttctggat 395
Query: 329 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 388
|| ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || ||
Sbjct: 396 ntctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 455
Query: 389 tctgctcgccttggtgatctgttcaacacacctcctta 426
||| | |||||| ||||||| | ||||||||||||||
Sbjct: 456 cctgttagccttgttgatctgctgaacacacctcctta 493
>gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003H10f, mRNA sequence
Length = 562
Score = 93.7 bits (47), Expect = 5e-018
Identities = 187/234 (79%)
Strand = Plus / Minus
Query: 253 cctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatgatcggatcag 312
|||| |||||| |||||||||||| | |||| |||| ||||| ||||||| ||||| |
Sbjct: 405 cctgagcagccatagggttctcctggaaatccatcaacacctgtcgcatgataggatcgg 346
Query: 313 tcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttcagttcct 372
| |||||||||||||| || ||||| ||||| ||||| ||||| |||| | || ||||
Sbjct: 345 taaggatgttctggatttctgggtcctgcatagctttactctgtttctcctgcaaatcct 286
Query: 373 cctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctccttacaccat 432
||| ||| | || || ||| | |||||| ||||||| | |||||||||||||| ||||
Sbjct: 285 cctgacttatgtcacccctgttggccttgttgatctgctgaacacacctccttatgccat 226
Query: 433 caagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcca 486
|||| | |||||||| || ||| || |||||| ||||| || ||||||||||
Sbjct: 225 caagcagttcctggttattagggtcaagctttaacccagcctggtaagtttcca 172
>gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04C07
5-PRIME, mRNA sequence
Length = 634
Score = 89.7 bits (45), Expect = 8e-017
Identities = 128/156 (82%)
Strand = Plus / Minus
Query: 331 cagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcctc 390
||||||| ||||| |||||| ||||||||| |||||||||||| |||| |||||||
Sbjct: 634 cagggtcctgcatagctttgccctgtctctccttcagttcctccggggtgagctcgcctc 575
Query: 391 tgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttt 450
|| |||||||| ||||||| | || ||| ||| |||||||||| || | |||||||||
Sbjct: 574 tgttcgccttgttgatctgctgaatacatctctttacaccatcgagcagctcctggttac 515
Query: 451 tcgggncatgctttaggccagcttgataagtttcca 486
|||| ||||||| ||||| | |||||||||||||
Sbjct: 514 tcggatcatgcttcaggccttcctgataagtttcca 479
>gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39p01 3', mRNA sequence
Length = 640
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 428 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 487
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 488 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 547
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 548 ttctgggtcctgcatagcttt 568
>gb|BQ468025.1|BQ468025 HR01L03r HR Hordeum vulgare subsp. vulgare cDNA clone HR01L03
5-PRIME, mRNA sequence
Length = 547
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 203 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 144
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 143 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 84
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 83 ttctgggtcctgcatagcttt 63
>gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. vulgare cDNA clone HI02A16
3-PRIME, mRNA sequence
Length = 558
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 360 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 419
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 420 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 479
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 480 ttctgggtcctgcatagcttt 500
>gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. vulgare cDNA clone HA03A17
3-PRIME, mRNA sequence
Length = 540
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 338 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 397
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 398 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 457
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 458 ttctgggtcctgcatagcttt 478
>gb|CA006166.1|CA006166 HU05B18u HU Hordeum vulgare subsp. vulgare cDNA clone HU05B18
3-PRIME, mRNA sequence
Length = 556
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 367 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 426
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 427 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 486
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 487 ttctgggtcctgcatagcttt 507
>gb|CA010273.1|CA010273 HT10P01u HT Hordeum vulgare subsp. vulgare cDNA clone HT10P01
3-PRIME, mRNA sequence
Length = 516
Score = 81.8 bits (41), Expect = 2e-014
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 345 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 404
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 405 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 464
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 465 ttctgggtcctgcatagcttt 485
>gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 5', mRNA sequence
Length = 508
Score = 77.8 bits (39), Expect = 3e-013
Identities = 164/206 (79%)
Strand = Plus / Minus
Query: 281 atccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttg 340
|||| |||| ||||| ||||||| ||||| || |||||||||||||| || ||||| ||
Sbjct: 503 atccatcaacacctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctg 444
Query: 341 catggctttgttctgtctctctttcagttcctcctcactgagttcgcctctgctcgcctt 400
||| ||||| ||||| |||| | || ||||||| ||| | || || ||| | |||||
Sbjct: 443 catagctttactctgtttctcctgcaaatcctcctgacttatgtcacccctgttagcctt 384
Query: 401 ggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcgggncatg 460
| ||||||| | |||||||||||||| |||||||| | |||||||| || ||| || |
Sbjct: 383 gttgatctgctgaacacacctccttatgccatcaagcagttcctggttattagggtcaag 324
Query: 461 ctttaggccagcttgataagtttcca 486
||||| ||||| || ||||||||||
Sbjct: 323 ctttaacccagcctggtaagtttcca 298
>gb|BJ476688.1|BJ476688 BJ476688 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36h13 3', mRNA sequence
Length = 558
Score = 75.8 bits (38), Expect = 1e-012
Identities = 115/141 (81%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 346 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 405
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| |||| || ||||||||||||||
Sbjct: 406 gttctcctggaaatccatcaacacctgtcgcatgatangatcggtaaggatgttctggat 465
Query: 329 ctcagggtcttgcatggcttt 349
|| ||||| ||||| |||||
Sbjct: 466 ttctgggtcctgcatagcttt 486
>gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i08 5', mRNA sequence
Length = 590
Score = 73.8 bits (37), Expect = 5e-012
Identities = 108/132 (81%)
Strand = Plus / Minus
Query: 355 gtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaa 414
||||||| |||||||||||| |||| ||||||||| |||||||| ||||||| | ||
Sbjct: 590 gtctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaa 531
Query: 415 cacacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagctt 474
||| ||| |||||||||| || | ||||||||| |||| ||||||| ||||| | |
Sbjct: 530 tacatctctttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcct 471
Query: 475 gataagtttcca 486
||||||||||||
Sbjct: 470 gataagtttcca 459
>gb|BI777816.2|BI777816 EBro08_SQ002_D01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_D01 5', mRNA sequence
Length = 340
Score = 71.9 bits (36), Expect = 2e-011
Identities = 99/120 (82%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 136 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 77
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 76 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 17
>gb|CA010063.1|CA010063 HT11L04u HT Hordeum vulgare subsp. vulgare cDNA clone HT11L04
3-PRIME, mRNA sequence
Length = 528
Score = 69.9 bits (35), Expect = 7e-011
Identities = 116/142 (81%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 345 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 404
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtca-ggatgttctgga 327
||||||||| | |||| |||| ||||| ||||||| ||||| || | ||||||||||||
Sbjct: 405 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtnagggatgttctgga 464
Query: 328 tctcagggtcttgcatggcttt 349
| || ||||| ||||| |||||
Sbjct: 465 tttctgggtcctgcatagcttt 486
>gb|BQ761897.1|BQ761897 EBpi01_SQ005_O05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_O05 5', mRNA sequence
Length = 456
Score = 67.9 bits (34), Expect = 3e-010
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 118 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 59
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctgg 326
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||
Sbjct: 58 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctgg 1
>gb|CB859612.1|CB859612 HI11A04w HI Hordeum vulgare subsp. vulgare cDNA clone HI11A04
3-PRIME, mRNA sequence
Length = 524
Score = 63.9 bits (32), Expect = 5e-009
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| | || |||| ||||||| |||
Sbjct: 397 gagcttttggatcttctgtgccactccagggtccttcaaatgatcctgagcagccctagg 456
Query: 269 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 328
||||||||| | |||| |||| ||||| ||||||| ||||| || ||||||||||||||
Sbjct: 457 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 516
>gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017E08f, mRNA sequence
Length = 908
Score = 56.0 bits (28), Expect = 1e-006
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| ||||||| | |||||||||||||| |||||||| | |||||||| || |||
Sbjct: 531 gccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggttattaggg 472
Query: 456 ncatgctttaggccagcttgataagtttcca 486
|| |||||| ||||| || ||||||||||
Sbjct: 471 tcaagctttaacccagcctggtaagtttcca 441
>gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 5', mRNA sequence
Length = 625
Score = 56.0 bits (28), Expect = 1e-006
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| ||||||| | |||||||||||||| |||||||| | |||||||| || |||
Sbjct: 590 gccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggttattaggg 531
Query: 456 ncatgctttaggccagcttgataagtttcca 486
|| |||||| ||||| || ||||||||||
Sbjct: 530 tcaagctttaacccagcctggtaagtttcca 500
>gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44H15
5-PRIME, mRNA sequence
Length = 536
Score = 56.0 bits (28), Expect = 1e-006
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 396 gccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcggg 455
|||||| ||||||| | |||||||||||||| |||||||| | |||||||| || |||
Sbjct: 501 gccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggttattaggg 442
Query: 456 ncatgctttaggccagcttgataagtttcca 486
|| |||||| ||||| || ||||||||||
Sbjct: 441 tcaagctttaacccagcctggtaagtttcca 411
>gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37e05 5', mRNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 3e-004
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 404 gatctgttcaacacacctccttacaccatcaagtaactcctggtttttcgggncatgctt 463
|||||| | |||||||||||||| |||||||| | |||||||| || ||| || ||||
Sbjct: 617 gatctgctgaacacacctccttatgccatcaagcagttcctggttattagggtcaagctt 558
Query: 464 taggccagcttgataagtttcca 486
|| ||||| || ||||||||||
Sbjct: 557 taacccagcctggtaagtttcca 535
>gb|BQ458960.1|BQ458960 HA02L12r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L12
5-PRIME, mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.017
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 209 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 268
|||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| |||
Sbjct: 70 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 11
Query: 269 gttctcctg 277
|||||||||
Sbjct: 10 gttctcctg 2
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,687
Number of Sequences: 312970
Number of extensions: 39687
Number of successful extensions: 10713
Number of sequences better than 0.5: 105
Number of HSP's better than 0.5 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10566
Number of HSP's gapped (non-prelim): 107
length of query: 487
length of database: 175,134,539
effective HSP length: 18
effective length of query: 469
effective length of database: 169,501,079
effective search space: 79496006051
effective search space used: 79496006051
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)