BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3570920.2.1
(786 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ463203.1|BQ463203 HI04G07r HI Hordeum vulgare subsp. v... 155 3e-036
gb|AV833448.1|AV833448 AV833448 K. Sato unpublished cDNA li... 105 2e-021
gb|CA030391.1|CA030391 HX06O18r HX Hordeum vulgare subsp. v... 98 5e-019
gb|BU998054.1|BU998054 HI09N16r HI Hordeum vulgare subsp. v... 92 3e-017
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 46 0.002
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 44 0.007
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 44 0.007
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 44 0.007
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 44 0.007
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.027
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.11
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.11
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.11
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.11
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.11
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.42
>gb|BQ463203.1|BQ463203 HI04G07r HI Hordeum vulgare subsp. vulgare cDNA clone HI04G07
5-PRIME, mRNA sequence
Length = 481
Score = 155 bits (78), Expect = 3e-036
Identities = 177/210 (84%)
Strand = Plus / Plus
Query: 546 gatacgccatgttgttaatgacagcggcacaccggcgaaaccaggggaagagattgatgt 605
|||||||||||| || |||||||| ||||| || || || || || ||||| || || ||
Sbjct: 1 gatacgccatgtcgtcaatgacagtggcacgcctgccaagcctggagaagaaatagacgt 60
Query: 606 ctacatattttcattgttcaatgagaacaggaaacctggcatcgagtcggagaggaactg 665
|||||| || || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 61 ctacatcttctccttgttcaatgagaacaggaagccgggcatcgagtcggagaggaactg 120
Query: 666 gggactgttttttcctgataagagctctatctacagccttgattggacgggccgaggcaa 725
|||||| || | ||| || ||||||| ||||||||| | |||||||| |||||||| ||
Sbjct: 121 gggactcttctctccggaccagagctccatctacagcgtagattggactggccgaggaaa 180
Query: 726 tgtggatgtgatgactggagcaaacattac 755
|||||| | |||||||||| |||| ||||
Sbjct: 181 tgtggacatcatgactggaggaaaccttac 210
>gb|AV833448.1|AV833448 AV833448 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags9e22, mRNA sequence
Length = 405
Score = 105 bits (53), Expect = 2e-021
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 328 cacctacatcaccgtcggcgccgagatcaccgagagcaccatcaacgtctcctccctcgt 387
Query: 69 cgtgccagccatgcgca 85
|||||| ||||||||||
Sbjct: 388 cgtgccggccatgcgca 404
>gb|CA030391.1|CA030391 HX06O18r HX Hordeum vulgare subsp. vulgare cDNA clone HX06O18
5-PRIME, mRNA sequence
Length = 350
Score = 97.6 bits (49), Expect = 5e-019
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 267 cacctacatcaccgtcggcgccgagatcaccgagagcaccatcaacgtctcctccctcgt 326
Query: 69 cgtgcc-agccatgcgcaatgtgc 91
|||||| ||||||||||| ||||
Sbjct: 327 cgtgccgngccatgcgcaacgtgc 350
>gb|BU998054.1|BU998054 HI09N16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09N16
5-PRIME, mRNA sequence
Length = 600
Score = 91.7 bits (46), Expect = 3e-017
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||
Sbjct: 535 cacctacatcaccgtcggcgccgagatcaccgagagcaccatcaacgtctcctccctcgt 594
Query: 69 cgtgcc 74
||||||
Sbjct: 595 cgtgcc 600
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 764 atggtacctgcccgggcggccgc 786
|||||||||||||||||||||||
Sbjct: 305 atggtacctgcccgggcggccgc 283
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 271 gtacctgcccgggcggccgc 290
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 31 tggtacctgcccgggcggccgc 10
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 260 tggtacctgcccgggcggccgc 281
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 105 tggtacctgcccgggcggccgc 84
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 105 tggtacctgcccgggcggccgc 84
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 766 ggtacctgcccgggcggccgc 786
|||||||||||||||||||||
Sbjct: 274 ggtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgc 360
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgc 260
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 328 gtacctgcccgggcggccgc 347
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 334 gtacctgcccgggcggccgc 353
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgc 519
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgc 433
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 768 tacctgcccgggcggccgc 786
|||||||||||||||||||
Sbjct: 312 tacctgcccgggcggccgc 330
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccg 785
|||||||||||||||||||
Sbjct: 194 gtacctgcccgggcggccg 212
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,278
Number of Sequences: 312970
Number of extensions: 87278
Number of successful extensions: 23999
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23975
Number of HSP's gapped (non-prelim): 23
length of query: 786
length of database: 175,134,539
effective HSP length: 19
effective length of query: 767
effective length of database: 169,188,109
effective search space: 129767279603
effective search space used: 129767279603
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)