BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF627578.2|BF627578 HVSMEb0005D17f Hordeum vulgare seedl... 222 1e-056
gb|BF258204.2|BF258204 HVSMEf0015B12f Hordeum vulgare seedl... 222 1e-056
gb|BF253522.3|BF253522 HVSMEf0001C17f Hordeum vulgare seedl... 222 1e-056
gb|AV919157.1|AV919157 AV919157 K. Sato unpublished cDNA li... 222 1e-056
gb|AV921006.1|AV921006 AV921006 K. Sato unpublished cDNA li... 216 7e-055
gb|BJ548879.1|BJ548879 BJ548879 K. Sato unpublished cDNA li... 208 2e-052
gb|BJ546337.1|BJ546337 BJ546337 K. Sato unpublished cDNA li... 200 4e-050
gb|BU970828.1|BU970828 HB15M21r BC Hordeum vulgare subsp. v... 198 2e-049
gb|BM816655.1|BM816655 HB01A07_T3.ab1 HB Hordeum vulgare su... 194 3e-048
gb|BI958920.1|BI958920 HVSMEn0017D23f Hordeum vulgare rachi... 192 1e-047
gb|BM443008.2|BM443008 EBro02_SQ002_C21_R root, 3 week, hyd... 192 1e-047
gb|BU972745.1|BU972745 HB22J12r BC Hordeum vulgare subsp. v... 192 1e-047
gb|BU996667.1|BU996667 HM14F14r HM Hordeum vulgare subsp. v... 192 1e-047
gb|CA002810.1|CA002810 HS08J14r HS Hordeum vulgare subsp. v... 192 1e-047
gb|BJ544684.1|BJ544684 BJ544684 K. Sato unpublished cDNA li... 192 1e-047
gb|BQ757608.1|BQ757608 EBem10_SQ004_K13_R embryo, 2 Day ger... 186 6e-046
gb|BJ449493.1|BJ449493 BJ449493 K. Sato unpublished cDNA li... 182 1e-044
gb|CV062330.1|CV062330 BNEL78h1 Barley EST endosperm librar... 180 4e-044
gb|CV063225.1|CV063225 BNEL88a10 Barley EST endosperm libra... 180 4e-044
gb|AV914847.1|AV914847 AV914847 K. Sato unpublished cDNA li... 178 1e-043
gb|AL510717.1|AL510717 AL510717 Hordeum vulgare Barke devel... 172 9e-042
gb|BI960078.1|BI960078 HVSMEn0023C04f Hordeum vulgare rachi... 170 4e-041
gb|BJ546155.1|BJ546155 BJ546155 K. Sato unpublished cDNA li... 170 4e-041
gb|AV911559.1|AV911559 AV911559 K. Sato unpublished cDNA li... 163 9e-039
gb|AJ463159.1|AJ463159 AJ463159 S00002 Hordeum vulgare subs... 151 3e-035
gb|AJ463158.1|AJ463158 AJ463158 S00002 Hordeum vulgare subs... 147 5e-034
gb|BE455469.2|BE455469 HVSMEg0017F01f Hordeum vulgare pre-a... 143 8e-033
gb|BF256948.2|BF256948 HVSMEf0011H06f Hordeum vulgare seedl... 141 3e-032
gb|BM370165.2|BM370165 EBro08_SQ003_D02_R root, 3 week, dro... 141 3e-032
gb|BG418221.1|BG418221 HVSMEk0021P03f Hordeum vulgare testa... 139 1e-031
gb|BE519855.1|BE519855 HV_CEb0021H15f Hordeum vulgare seedl... 133 8e-030
gb|AV909659.1|AV909659 AV909659 K. Sato unpublished cDNA li... 127 5e-028
gb|BE215685.3|BE215685 HV_CEb0007P22f Hordeum vulgare seedl... 125 2e-027
gb|BG301258.2|BG301258 HVSMEb0020E14f Hordeum vulgare seedl... 123 8e-027
gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA li... 123 8e-027
gb|BQ471753.1|BQ471753 HV03F22r HV Hordeum vulgare subsp. v... 119 1e-025
gb|BJ549915.1|BJ549915 BJ549915 K. Sato unpublished cDNA li... 117 5e-025
gb|BG416704.2|BG416704 HVSMEk0014D01f Hordeum vulgare testa... 115 2e-024
gb|BJ544855.1|BJ544855 BJ544855 K. Sato unpublished cDNA li... 115 2e-024
gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA li... 111 3e-023
gb|BF620279.2|BF620279 HVSMEc0019E20f Hordeum vulgare seedl... 109 1e-022
gb|BF260520.3|BF260520 HVSMEf0022D16f Hordeum vulgare seedl... 109 1e-022
gb|BJ456934.1|BJ456934 BJ456934 K. Sato unpublished cDNA li... 109 1e-022
gb|BU969174.1|BU969174 HB10M08r BC Hordeum vulgare subsp. v... 107 5e-022
gb|BQ763370.1|BQ763370 EBro02_SQ008_K01_R root, 3 week, hyd... 105 2e-021
gb|AL502423.1|AL502423 AL502423 Hordeum vulgare Barke roots... 103 7e-021
gb|BU988947.1|BU988947 HF19D20r HF Hordeum vulgare subsp. v... 103 7e-021
gb|AJ436651.1|AJ436651 AJ436651 S00002 Hordeum vulgare subs... 96 2e-018
gb|BF259502.2|BF259502 HVSMEf0019I02f Hordeum vulgare seedl... 94 7e-018
gb|CB877081.1|CB877081 HP03I02T HP Hordeum vulgare subsp. v... 94 7e-018
gb|CB879741.1|CB879741 HP03I02w HP Hordeum vulgare subsp. v... 90 1e-016
gb|BI951009.1|BI951009 HVSMEl0024A04f Hordeum vulgare spike... 84 7e-015
gb|BM442828.2|BM442828 EBro02_SQ001_H02_R root, 3 week, hyd... 84 7e-015
gb|BQ757060.1|BQ757060 EBem10_SQ002_K18_R embryo, 2 Day ger... 80 1e-013
gb|BJ549498.1|BJ549498 BJ549498 K. Sato unpublished cDNA li... 72 2e-011
gb|BU972342.1|BU972342 HB21G01r BC Hordeum vulgare subsp. v... 66 2e-009
gb|BI947157.1|BI947157 HVSMEl0003P09f Hordeum vulgare spike... 64 6e-009
gb|BE060857.3|BE060857 HVSMEg0013J21f Hordeum vulgare pre-a... 64 6e-009
gb|BM443269.2|BM443269 EBro02_SQ003_F16_R root, 3 week, hyd... 60 1e-007
gb|BQ756196.1|BQ756196 EBem05_SQ004_C06_R embryo, 14 DPA, n... 50 9e-005
gb|CB877082.1|CB877082 HP03I03T HP Hordeum vulgare subsp. v... 50 9e-005
gb|BM371263.2|BM371263 EBma08_SQ002_A24_R maternal, 28 DPA,... 40 0.088
gb|CB878405.1|CB878405 HP08G23T HP Hordeum vulgare subsp. v... 40 0.088
>gb|BF627578.2|BF627578 HVSMEb0005D17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005D17f, mRNA sequence
Length = 771
Score = 222 bits (112), Expect = 1e-056
Identities = 304/368 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 264 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 323
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 324 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 383
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 384 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 443
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 444 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 503
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | | || || |||| || || ||||||||||||
Sbjct: 504 ccgcacaagcgcaagccagatatcaccagagccaaggagcaacttgggtgggagcccaag 563
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| ||||| || ||||||||||| || || |||||
Sbjct: 564 atcgccctccgtgacggcctcccccttatggttaccgacttccgcaagcggatattcggc 623
Query: 366 gaccagga 373
||||||||
Sbjct: 624 gaccagga 631
>gb|BF258204.2|BF258204 HVSMEf0015B12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015B12f, mRNA sequence
Length = 749
Score = 222 bits (112), Expect = 1e-056
Identities = 304/368 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 40 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 99
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 100 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 159
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 160 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 219
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 220 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 279
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | || || |||| || || ||||||||||||
Sbjct: 280 ccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaag 339
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 340 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 399
Query: 366 gaccagga 373
||||||||
Sbjct: 400 gaccagga 407
>gb|BF253522.3|BF253522 HVSMEf0001C17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001C17f, mRNA sequence
Length = 850
Score = 222 bits (112), Expect = 1e-056
Identities = 304/368 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 8 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 67
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 68 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 127
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 128 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 187
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 188 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 247
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | || || |||| || || ||||||||||||
Sbjct: 248 ccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaag 307
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 308 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 367
Query: 366 gaccagga 373
||||||||
Sbjct: 368 gaccagga 375
>gb|AV919157.1|AV919157 AV919157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m11 3', mRNA sequence
Length = 678
Score = 222 bits (112), Expect = 1e-056
Identities = 304/368 (82%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 601 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 542
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 541 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 482
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 481 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 422
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 421 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 362
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | || || |||| || || ||||||||||||
Sbjct: 361 ccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaag 302
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 301 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 242
Query: 366 gaccagga 373
||||||||
Sbjct: 241 gaccagga 234
>gb|AV921006.1|AV921006 AV921006 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h19 3', mRNA sequence
Length = 705
Score = 216 bits (109), Expect = 7e-055
Identities = 303/368 (82%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| |||||| |||||||||| || || || |||||||||||||| |||
Sbjct: 602 gttgctcaggcgctaaggaagnagcctttgacggtttacggcgatggcaagcagaccagg 543
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 542 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 483
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 482 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 423
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 422 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 363
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | || || |||| || || ||||||||||||
Sbjct: 362 ccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaag 303
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 302 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 243
Query: 366 gaccagga 373
||||||||
Sbjct: 242 gaccagga 235
>gb|BJ548879.1|BJ548879 BJ548879 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37k14 3', mRNA sequence
Length = 618
Score = 208 bits (105), Expect = 2e-052
Identities = 304/369 (82%), Gaps = 1/369 (0%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtct-atggtgatggcaagcagactag 64
|||||||||||||| ||||||||||||||||| || | | || |||||||||||||| ||
Sbjct: 600 gttgctcaggcgctaaggaaggagcctttgacggttttacggcgatggcaagcagaccag 541
Query: 65 gagctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagca 124
||| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || ||
Sbjct: 540 gagtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatca 481
Query: 125 cattgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
||||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 480 cattgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggt 421
Query: 185 ggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatga 244
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 420 tgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacga 361
Query: 245 tccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaa 304
||||||||||||||||| || |||| | || || |||| || || |||||||||||
Sbjct: 360 cccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaa 301
Query: 305 ggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcgg 364
| | |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 300 gatcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcgg 241
Query: 365 ggaccagga 373
||||||||
Sbjct: 240 cgaccagga 232
>gb|BJ546337.1|BJ546337 BJ546337 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39a18 3', mRNA sequence
Length = 514
Score = 200 bits (101), Expect = 4e-050
Identities = 290/353 (82%)
Strand = Plus / Minus
Query: 21 aggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtc 80
||||||||||||||||| || || || |||||||||||||| ||||| || ||||| ||
Sbjct: 512 aggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtt 453
Query: 81 tcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaac 140
|| |||||||| || ||| |||||| ||| |||||||| || ||||||||||| ||||||
Sbjct: 452 tctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaac 393
Query: 141 ctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatc 200
| |||||||| || || |||| ||||||||| ||||| ||||| |||||||||||||||
Sbjct: 392 ttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatc 333
Query: 201 gacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaag 260
||||| | |||| |||||||||||| ||||||| || || |||||||||||||||
Sbjct: 332 gacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaag 273
Query: 261 cctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgag 320
|| || |||| | || || |||| || || |||||||||||| | ||||||||||
Sbjct: 272 ccagatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgac 213
Query: 321 ggccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccagga 373
||||| |||| |||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 212 ggcctccccctcatggttaccgacttccgcaagcggatattcggcgaccagga 160
>gb|BU970828.1|BU970828 HB15M21r BC Hordeum vulgare subsp. vulgare cDNA clone HB15M21
5-PRIME, mRNA sequence
Length = 492
Score = 198 bits (100), Expect = 2e-049
Identities = 286/348 (82%)
Strand = Plus / Plus
Query: 26 ggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcaga 85
|||||||||||| || || || |||||||||||||| ||||| || ||||| || || ||
Sbjct: 10 ggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtttctga 69
Query: 86 tttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcgg 145
|||||| || ||| |||||| ||| |||||||| || ||||||||||| |||||| | ||
Sbjct: 70 tttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaacttggg 129
Query: 146 caaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccc 205
|||||| || || |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 130 caaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcgaccc 189
Query: 206 agaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctga 265
| |||| |||||||||||| ||||||| || || ||||||||||||||||| ||
Sbjct: 190 gaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagccaga 249
Query: 266 catcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggcct 325
|||| | || || |||| ||||| |||||||||||| | |||||||||| |||||
Sbjct: 250 tatcaccaaggccaaggagcaactcgggtgggagcccaagatcgccctccgtgacggcct 309
Query: 326 tccccgcatggtcactgacttccgcaaacgtatcttcggggaccagga 373
|||| |||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 310 ccccctcatggttaccgacttccgcaagcggatattcggcgaccagga 357
>gb|BM816655.1|BM816655 HB01A07_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01A07_T3.ab1 similar to dTDP-glucose 4,6-dehydratase,,
mRNA sequence
Length = 859
Score = 194 bits (98), Expect = 3e-048
Identities = 288/349 (82%), Gaps = 2/349 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 372 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 431
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 432 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 491
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||| ||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 492 attgngccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 551
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 552 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 611
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaa-gagctcctcggctgggagcccaa 304
||||||||||||||||| || |||| | || ||| |||| | |||| |||||||||||
Sbjct: 612 ccgcacaagcgcaagccagatatcaccaaggccaaaggagcacttcgggtgggagcccaa 671
Query: 305 ggttcccct-ccgtgagggccttccccgcatggtcactgacttccgcaa 352
| | |||| |||||| |||||||||| ||||| || |||||||||||
Sbjct: 672 gatcgccctcccgtgacggccttcccctcatgggtaccgacttccgcaa 720
>gb|BI958920.1|BI958920 HVSMEn0017D23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017D23f, mRNA sequence
Length = 648
Score = 192 bits (97), Expect = 1e-047
Identities = 289/353 (81%)
Strand = Plus / Minus
Query: 21 aggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtc 80
|||||||||| |||||| || || || |||||||||||||| ||||| || ||||| ||
Sbjct: 642 aggaaggagcttttgacggtttagggcgatggcaagcagaccaggagtttccaatacgtt 583
Query: 81 tcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaac 140
|| |||||||| || ||| |||||| ||| |||||||| || ||||||||||| ||||||
Sbjct: 582 tctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaac 523
Query: 141 ctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatc 200
| |||||||| || || |||| ||||||||| ||||| ||||| |||||||||||||||
Sbjct: 522 ttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatc 463
Query: 201 gacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaag 260
||||| | |||| |||||||||||| ||||||| || || |||||||||||||||
Sbjct: 462 gacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaag 403
Query: 261 cctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgag 320
|| || |||| | || || |||| || || |||||||||||| | ||||||||||
Sbjct: 402 ccagatatcaccaaggccaaggagcaacttgggtgggagcccaagatcgccctccgtgac 343
Query: 321 ggccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccagga 373
||||| |||| |||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 342 ggcctccccctcatggttaccgacttccgcaagcggatattcggcgaccagga 290
>gb|BM443008.2|BM443008 EBro02_SQ002_C21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_C21 5', mRNA sequence
Length = 465
Score = 192 bits (97), Expect = 1e-047
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 200 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 259
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 260 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 319
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 320 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 379
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 380 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 439
Query: 246 ccgcacaagcgcaagcc 262
|||||||||||||||||
Sbjct: 440 ccgcacaagcgcaagcc 456
>gb|BU972745.1|BU972745 HB22J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB22J12
5-PRIME, mRNA sequence
Length = 619
Score = 192 bits (97), Expect = 1e-047
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 324 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 383
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 384 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 443
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 444 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 503
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 504 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 563
Query: 246 ccgcacaagcgcaagcc 262
|||||||||||||||||
Sbjct: 564 ccgcacaagcgcaagcc 580
>gb|BU996667.1|BU996667 HM14F14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14F14
5-PRIME, mRNA sequence
Length = 604
Score = 192 bits (97), Expect = 1e-047
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 313 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 372
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 373 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 432
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 433 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 492
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 493 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 552
Query: 246 ccgcacaagcgcaagcc 262
|||||||||||||||||
Sbjct: 553 ccgcacaagcgcaagcc 569
>gb|CA002810.1|CA002810 HS08J14r HS Hordeum vulgare subsp. vulgare cDNA clone HS08J14
5-PRIME, mRNA sequence
Length = 466
Score = 192 bits (97), Expect = 1e-047
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 164 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 223
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 224 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 283
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 284 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 343
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 344 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 403
Query: 246 ccgcacaagcgcaagcc 262
|||||||||||||||||
Sbjct: 404 ccgcacaagcgcaagcc 420
>gb|BJ544684.1|BJ544684 BJ544684 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34f15 5', mRNA sequence
Length = 540
Score = 192 bits (97), Expect = 1e-047
Identities = 217/257 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 247 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 306
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 307 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 366
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 367 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 426
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 427 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 486
Query: 246 ccgcacaagcgcaagcc 262
|||||||||||||||||
Sbjct: 487 ccgcacaagcgcaagcc 503
>gb|BQ757608.1|BQ757608 EBem10_SQ004_K13_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ004_K13 5', mRNA sequence
Length = 479
Score = 186 bits (94), Expect = 6e-046
Identities = 268/326 (82%)
Strand = Plus / Plus
Query: 48 gatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaag 107
|||||||||||||| ||||| || ||||| || || |||||||| || ||| |||||| |
Sbjct: 3 gatggcaagcagaccaggagtttccaatacgtttccgatttggttgaggggttgatgagg 62
Query: 108 ctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatg 167
|| |||||||| || ||||||||||| |||||| | |||||||| || || |||| ||||
Sbjct: 63 ctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatg 122
Query: 168 ctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgt 227
||||| ||||| ||||| |||||||||||||||||||| | |||| ||||||||||||
Sbjct: 123 ctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgt 182
Query: 228 ccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctc 287
||||||| || || ||||||||||||||||| || |||| | || || ||||
Sbjct: 183 gagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaa 242
Query: 288 ctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttc 347
||||| |||||||||||| | |||||||||| ||||| |||| |||||| || ||||||
Sbjct: 243 ctcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttc 302
Query: 348 cgcaaacgtatcttcggggaccagga 373
||||| || || ||||| ||||||||
Sbjct: 303 cgcaagcggatattcggcgaccagga 328
>gb|BJ449493.1|BJ449493 BJ449493 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25e05 5', mRNA sequence
Length = 398
Score = 182 bits (92), Expect = 1e-044
Identities = 245/296 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| |||| || || || || ||||||||||| ||||||||
Sbjct: 103 caggcactgaggaaggagcccctgacggtgtacggcgacggcaagcagacgaggagcttc 162
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| |||| || |||||||||||||| ||||| ||||||||| | |||
Sbjct: 163 cagtacgtctccgatctggttgaggggctgatgaagctgatggagggggagcacgtgggg 222
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
||||||||||| || ||||| || || |||| |||||||||||||| |||||||| |||
Sbjct: 223 ccgttcaacctggggaacccgggggagttcacgatgctggagctggccaaggtggtgcag 282
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
|||||||||||||| | || ||||||||||| | |||||||| || || ||||||
Sbjct: 283 gacaccatcgaccccaacgcaaggatcgagttccgggccaacaccgccgacgacccgcac 342
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggt 307
||||||||||| ||||||| | || || ||||| ||||| ||||||||||||||
Sbjct: 343 aagcgcaagccggacatcaccaaggccaaggagctgctcgggtgggagcccaaggt 398
>gb|CV062330.1|CV062330 BNEL78h1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL78h1 5' similar to UDP-glucuronic
acid decarboxylase, mRNA sequence
Length = 563
Score = 180 bits (91), Expect = 4e-044
Identities = 265/323 (82%)
Strand = Plus / Plus
Query: 51 ggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctc 110
||||||||||| ||||| || ||||| || || |||||||| || ||| |||||| |||
Sbjct: 1 ggcaagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctg 60
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
|||||||| || ||||||||||| |||||| | |||||||| || || |||| |||||||
Sbjct: 61 atggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctg 120
Query: 171 gagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccg 230
|| ||||| ||||| |||||||||||||||||||| | |||| |||||||||||| |
Sbjct: 121 gaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgag 180
Query: 231 aacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctc 290
|||||| || || ||||||||||||||||| || |||| | || || |||| |||
Sbjct: 181 aacacccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactc 240
Query: 291 ggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgc 350
|| |||||||||||| | |||||||||| ||||| |||| |||||| || |||||||||
Sbjct: 241 gggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgc 300
Query: 351 aaacgtatcttcggggaccagga 373
|| || || ||||| ||||||||
Sbjct: 301 aagcggatattcggcgaccagga 323
>gb|CV063225.1|CV063225 BNEL88a10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88a10 5' similar to dTDP-glucose
4-6-dehydratase-like protein, mRNA sequence
Length = 622
Score = 180 bits (91), Expect = 4e-044
Identities = 265/323 (82%)
Strand = Plus / Plus
Query: 51 ggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctc 110
||||||||||| ||||| || ||||| || || |||||||| || ||| |||||| |||
Sbjct: 1 ggcaagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctg 60
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
|||||||| || ||||||||||| |||||| | |||||||| || || |||| |||||||
Sbjct: 61 atggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctg 120
Query: 171 gagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccg 230
|| ||||| ||||| |||||||||||||||||||| | |||| |||||||||||| |
Sbjct: 121 gaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgag 180
Query: 231 aacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctc 290
|||||| || || ||||||||||||||||| || |||| | || || |||| |||
Sbjct: 181 aacacccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactc 240
Query: 291 ggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgc 350
|| |||||||||||| | |||||||||| ||||| |||| |||||| || |||||||||
Sbjct: 241 gggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgc 300
Query: 351 aaacgtatcttcggggaccagga 373
|| || || ||||| ||||||||
Sbjct: 301 aagcggatattcggcgaccagga 323
>gb|AV914847.1|AV914847 AV914847 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8i09 5', mRNA sequence
Length = 519
Score = 178 bits (90), Expect = 1e-043
Identities = 189/222 (85%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 298 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 357
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 358 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 417
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||||||| |||||| | |||||||| || || |||| ||||||||| ||||| |||||
Sbjct: 418 attgggccattcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggtt 477
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgt 227
|||||||||||||||||||| | |||| ||||||||||||
Sbjct: 478 gtccaggacaccatcgacccgaacgcgcggatcgagttccgt 519
>gb|AL510717.1|AL510717 AL510717 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05M18u 3',
mRNA sequence
Length = 580
Score = 172 bits (87), Expect = 9e-042
Identities = 268/327 (81%), Gaps = 1/327 (0%)
Strand = Plus / Minus
Query: 48 gatggcaagcagactaggagctttcaatatgtctca-gatttggtggaagggctgatgaa 106
|||||||||||||| ||||| || ||||| || || |||||||| || ||| ||||||
Sbjct: 548 gatggcaagcagaccaggagtttccaatacgtttcttgatttggttgaggggttgatgag 489
Query: 107 gctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcat 166
||| |||||||| || ||||||||||| |||||| | |||||||| || || |||| |||
Sbjct: 488 gctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccat 429
Query: 167 gctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccg 226
|||||| ||||| ||||| |||||||||||||||||||| | |||| |||||||||||
Sbjct: 428 gctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccg 369
Query: 227 tccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagct 286
| ||||||| || || ||||||||||||||||| || |||| | || || ||||
Sbjct: 368 tgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagca 309
Query: 287 cctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgactt 346
||||| |||||||||||| | |||||||||| ||||| |||| |||||| || |||||
Sbjct: 308 actcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgactt 249
Query: 347 ccgcaaacgtatcttcggggaccagga 373
|||||| || || ||||| ||||||||
Sbjct: 248 ccgcaagcggatattcggcgaccagga 222
>gb|BI960078.1|BI960078 HVSMEn0023C04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C04f, mRNA sequence
Length = 617
Score = 170 bits (86), Expect = 4e-041
Identities = 293/361 (81%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| |||| || || || || ||||||||||| ||||||||
Sbjct: 71 caggcactgaggaaggagcccctgacggtgtacggcgacggcaagcagacgaggagcttc 130
Query: 72 caatatgtctcagatttggtggaagggctgatg-aagctcatggaaggggagcacattgg 130
|| || ||||| ||| |||| || ||||||||| ||||| ||||| ||||||||| | ||
Sbjct: 131 cagtacgtctccgatctggttgaggggctgatgnaagctgatggagggggagcacgtggg 190
Query: 131 gccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtcca 190
|||||||||||| || ||||| || || |||| |||||||||||||| |||||||| ||
Sbjct: 191 gccgttcaacctggggaacccgggggagttcacgatgctggagctggccaaggtggtgca 250
Query: 191 ggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgca 250
||||||||||||||| | || ||||||||||| | |||||||| || || |||||
Sbjct: 251 ggacaccatcgaccccaacgcaaggatcgagttccgggccaacaccgccgacgacccgca 310
Query: 251 caagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcc 310
|||||||||||| ||||||| | || || ||||| ||||| |||||||||||||| |
Sbjct: 311 caagcgcaagccggacatcaccaaggccaaggagctgctcgggtgggagcccaaggtggc 370
Query: 311 cctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||| | ||||| || | ||||||| |||||||||| || |||||||| |||||
Sbjct: 371 gctccggaacggcctcccgctcatggtccangacttccgcacccgcatcttcggcgacca 430
Query: 371 g 371
|
Sbjct: 431 g 431
>gb|BJ546155.1|BJ546155 BJ546155 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34f15 3', mRNA sequence
Length = 555
Score = 170 bits (86), Expect = 4e-041
Identities = 263/322 (81%)
Strand = Plus / Minus
Query: 52 gcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctca 111
|||||||||| ||||| || ||||| || || |||||||| || ||| |||||| ||| |
Sbjct: 555 gcaagcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctga 496
Query: 112 tggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctgg 171
||||||| || ||||||||||| |||||| | |||||||| || || |||| ||||||||
Sbjct: 495 tggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctgg 436
Query: 172 agctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccga 231
| ||||| ||||| |||||||||||||||||||| | |||| |||||||||||| ||
Sbjct: 435 aactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgaga 376
Query: 232 acaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcg 291
||||| || || ||||||||||||||||| || |||| | || || |||| || |
Sbjct: 375 acacccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttg 316
Query: 292 gctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgca 351
| |||||||||||| | |||||||||| ||||| |||| |||||| || ||||||||||
Sbjct: 315 ggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgca 256
Query: 352 aacgtatcttcggggaccagga 373
| || || ||||| ||||||||
Sbjct: 255 agcggatattcggcgaccagga 234
>gb|AV911559.1|AV911559 AV911559 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13i23 3', mRNA sequence
Length = 551
Score = 163 bits (82), Expect = 9e-039
Identities = 259/318 (81%)
Strand = Plus / Minus
Query: 56 gcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctcatgga 115
|||||| ||||| || ||||| || || |||||||| || ||| |||||| ||| |||||
Sbjct: 551 gcagaccaggagtttccaatacgtttctgatttggttgaggggttgatgaggctgatgga 492
Query: 116 aggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctggagct 175
||| || ||||||||||| |||||| | |||||||| || || |||| ||||||||| ||
Sbjct: 491 aggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctggaact 432
Query: 176 ggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacac 235
||| ||||| |||||||||||||||||||| | |||| |||||||||||| ||||||
Sbjct: 431 ggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacac 372
Query: 236 cgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctg 295
| || || ||||||||||||||||| || |||| | || || |||| || || ||
Sbjct: 371 ccaggacgacccgcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtg 312
Query: 296 ggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacg 355
|||||||||| | |||||||||| ||||| |||| |||||| || ||||||||||| ||
Sbjct: 311 ggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcg 252
Query: 356 tatcttcggggaccagga 373
|| ||||| ||||||||
Sbjct: 251 gatattcggcgaccagga 234
>gb|AJ463159.1|AJ463159 AJ463159 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085A08F1, mRNA sequence
Length = 420
Score = 151 bits (76), Expect = 3e-035
Identities = 223/272 (81%)
Strand = Plus / Plus
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|||| ||| |||||||| || ||||||||||| |||||| | |||||||| || || |||
Sbjct: 1 atgaggctgatggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttc 60
Query: 162 agcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgag 221
| ||||||||| ||||| ||||| |||||||||||||||||||| | |||| ||||||
Sbjct: 61 accatgctggaactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgag 120
Query: 222 ttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaa 281
|||||| ||||||| || || ||||||||||||||||| || |||| | || ||
Sbjct: 121 ttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaag 180
Query: 282 gagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcact 341
|||| ||||| |||||||||||| | |||||||||| ||||| |||| |||||| ||
Sbjct: 181 gagcaactcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggttacc 240
Query: 342 gacttccgcaaacgtatcttcggggaccagga 373
||||||||||| || || ||||| ||||||||
Sbjct: 241 gacttccgcaagcggatattcggcgaccagga 272
>gb|AJ463158.1|AJ463158 AJ463158 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037F02F1, mRNA sequence
Length = 360
Score = 147 bits (74), Expect = 5e-034
Identities = 215/262 (82%)
Strand = Plus / Plus
Query: 112 tggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctgg 171
||||||| || ||||||||||| |||||| | |||||||| || || |||| ||||||||
Sbjct: 1 tggaaggtgatcacattgggccattcaacttgggcaaccccggtgagttcaccatgctgg 60
Query: 172 agctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccga 231
| ||||| ||||| |||||||||||||||||||| | |||| |||||||||||| ||
Sbjct: 61 aactggccaaggttgtccaggacaccatcgacccgaacgcgcggatcgagttccgtgaga 120
Query: 232 acaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcg 291
||||| || || ||||||||||||||||| || |||| | || || |||| ||||
Sbjct: 121 acacccaggacgacccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactcg 180
Query: 292 gctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgca 351
| |||||||||||| | |||||||||| ||||| |||| |||||| || ||||||||||
Sbjct: 181 ggtgggagcccaagatcgccctccgtgacggcctccccctcatggttaccgacttccgca 240
Query: 352 aacgtatcttcggggaccagga 373
| || || ||||| ||||||||
Sbjct: 241 agcggatattcggcgaccagga 262
>gb|BE455469.2|BE455469 HVSMEg0017F01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017F01f, mRNA sequence
Length = 588
Score = 143 bits (72), Expect = 8e-033
Identities = 177/212 (83%)
Strand = Plus / Plus
Query: 96 gggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctgga 155
|||||||||||||| ||||| ||||||||| | |||||||||||||| || ||||| ||
Sbjct: 263 gggctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccgggg 322
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcac 215
|| |||| |||||||||||||| |||||||| ||||||||||||||||| | ||
Sbjct: 323 gagttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaagg 382
Query: 216 atcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgc 275
||||||||||| | |||||||| || || ||||||||||||||||| ||||||| |
Sbjct: 383 atcgagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaag 442
Query: 276 gcgaaagagctcctcggctgggagcccaaggt 307
|| || ||||| ||||| ||||||||||||||
Sbjct: 443 gccaaggagctgctcgggtgggagcccaaggt 474
>gb|BF256948.2|BF256948 HVSMEf0011H06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H06f, mRNA sequence
Length = 538
Score = 141 bits (71), Expect = 3e-032
Identities = 191/231 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| |||||||||||| |||| || || |||||||| ||||||| |||
Sbjct: 40 gttgctcaggcgctaaggaaggagcctatgacggtttactgtgatggctagcagaccagg 99
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||||||| |||||| | || |||
Sbjct: 100 agtttccaatacgtttctgatttggttgaggggttgatgaagctgatggaatgtgatcac 159
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
|||| ||| |||||| | ||| |||| ||||| |||| ||||||||| |||| |||||
Sbjct: 160 attgagccattcaacttgggctaccccggagagttcaccatgctggaactggacaaggtt 219
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacacc 236
|| ||||||||||||||||| | |||| |||||||||||| |||||||
Sbjct: 220 gtgcaggacaccatcgacccgaacgcgctgatcgagttccgtgagaacacc 270
Score = 56.0 bits (28), Expect = 1e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 294 tgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaa 353
|||||||||||| | |||||||||| ||||| |||| ||||| || |||||||||||
Sbjct: 328 tgggagcccaagatcgccctccgtgacggcctccccctcatggataccgacttccgcaag 387
Query: 354 cgtatcttcggggaccagga 373
|| || ||||| ||||||||
Sbjct: 388 cggatattcggcgaccagga 407
>gb|BM370165.2|BM370165 EBro08_SQ003_D02_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_D02 5', mRNA sequence
Length = 242
Score = 141 bits (71), Expect = 3e-032
Identities = 176/211 (83%)
Strand = Plus / Plus
Query: 97 ggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggag 156
||||||||||||| ||||| ||||||||| | |||||||||||||| || ||||| || |
Sbjct: 1 ggctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccggggg 60
Query: 157 aattcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcaca 216
| |||| |||||||||||||| |||||||| ||||||||||||||||| | || |
Sbjct: 61 agttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaagga 120
Query: 217 tcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcg 276
|||||||||| | |||||||| || || ||||||||||||||||| ||||||| | |
Sbjct: 121 tcgagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaagg 180
Query: 277 cgaaagagctcctcggctgggagcccaaggt 307
| || ||||| ||||| ||||||||||||||
Sbjct: 181 ccaaggagctgctcgggtgggagcccaaggt 211
>gb|BG418221.1|BG418221 HVSMEk0021P03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0021P03f, mRNA sequence
Length = 491
Score = 139 bits (70), Expect = 1e-031
Identities = 175/210 (83%)
Strand = Plus / Minus
Query: 98 gctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggaga 157
|||||||||||| ||||| ||||||||| | |||||||||||||| || ||||| || ||
Sbjct: 491 gctgatgaagctgatggagggggagcacgtggggccgttcaacctggggaacccggggga 432
Query: 158 attcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacat 217
|||| |||||||||||||| |||||||| ||||||||||||||||| | || ||
Sbjct: 431 gttcacgatgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaaggat 372
Query: 218 cgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgc 277
||||||||| | |||||||| || || ||||||||||||||||| ||||||| | ||
Sbjct: 371 cgagttccgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaaggc 312
Query: 278 gaaagagctcctcggctgggagcccaaggt 307
|| ||||| ||||| ||||||||||||||
Sbjct: 311 caaggagctgctcgggtgggagcccaaggt 282
>gb|BE519855.1|BE519855 HV_CEb0021H15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021H15f, mRNA sequence
Length = 715
Score = 133 bits (67), Expect = 8e-030
Identities = 156/186 (83%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| |||| || || || || ||||||||||| ||||||||
Sbjct: 530 caggcactgaggaaggagcccctgacggtgtacggcgacggcaagcagacgaggagcttc 589
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| |||| || |||||||||||||| ||||| ||||||||| | |||
Sbjct: 590 cagtacgtctccgatctggttgaggggctgatgaagctgatggagggggagcacgtgggg 649
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
||||||||||| || ||||| | || |||| |||||||||||||| |||||||| |||
Sbjct: 650 ccgttcaacctggggaacccggnggagttcacgatgctggagctggccaaggtggtgcag 709
Query: 192 gacacc 197
||||||
Sbjct: 710 gacacc 715
>gb|AV909659.1|AV909659 AV909659 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13i23 5', mRNA sequence
Length = 521
Score = 127 bits (64), Expect = 5e-028
Identities = 237/292 (81%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 84 gatttggtggaagggctgatgaagctcatgg-aaggggagcacattgggccgttcaacct 142
|||||||| || ||| |||||| ||| |||| |||| || ||||||||||| |||||| |
Sbjct: 9 gatttggttgaggggttgatgaggctgatggnaaggtgatcacattgggccattcaactt 68
Query: 143 cggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcga 202
|||||||| || || |||| ||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 69 gggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggacaccatcga 128
Query: 203 cccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcc 262
||| | |||| |||||||||||| ||||||| || || |||||||||||||||||
Sbjct: 129 cccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaagcgcaagcc 188
Query: 263 tgacatcagccgcgc-gaaagagctcctcggctgggagcccaaggttcccctccgtgagg 321
|| |||| | || || |||| || || |||||||||||| | |||||||||| |
Sbjct: 189 agatatcaccaaggcacaaggagcaacttgggtgggagcccaagatcgccctccgtgacg 248
Query: 322 gccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccagga 373
|||| |||| |||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 249 gcctccccctcatggttaccgacttccgcaagcggatattcggcgaccagga 300
>gb|BE215685.3|BE215685 HV_CEb0007P22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007P22f, mRNA sequence
Length = 521
Score = 125 bits (63), Expect = 2e-027
Identities = 195/239 (81%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggac 194
|||||| | |||||||| || || |||| ||||||||| ||||| ||||| |||||||||
Sbjct: 3 ttcaacttgggcaaccccggtgagttcaccatgctggaactggccaaggttgtccaggac 62
Query: 195 accatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaag 254
||||||||||| | |||| |||||||||||| ||||||| || || |||||||||
Sbjct: 63 accatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgacccgcacaag 122
Query: 255 cgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctc 314
|||||||| || |||| | || || |||| ||||| |||||||||||| | |||||
Sbjct: 123 cgcaagccagatatcaccaaggcaaaggagcaactcgggtgggagcccaagatcgccctc 182
Query: 315 cgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccagga 373
||||| ||||| |||| |||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 183 cgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcgaccagga 241
>gb|BG301258.2|BG301258 HVSMEb0020E14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020E14f, mRNA sequence
Length = 900
Score = 123 bits (62), Expect = 8e-027
Identities = 161/194 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| |||| || || || || |||||||||| | ||||||
Sbjct: 447 caggcactgaggaaggagcccctgacggtgtacggcgaccgcaagcagacgatgagcttc 506
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| |||| || |||||||||||||| ||||| ||||||||| | |||
Sbjct: 507 cagtacgtctccgatctggttgaggggctgatgaagctgatggagggggagcacgtgggg 566
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|||||||| || || ||||| || || |||| |||||||||||||| || ||||| |||
Sbjct: 567 ccgttcaaactggggaaccccggggagttcacgatgctggagctggccaaagtggtgcag 626
Query: 192 gacaccatcgaccc 205
||||||||||||||
Sbjct: 627 gacaccatcgaccc 640
>gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m11 5', mRNA sequence
Length = 623
Score = 123 bits (62), Expect = 8e-027
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 478 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 537
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 538 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 597
Query: 126 attgggccgttcaacctcggcaaccc 151
|||||||| |||||| | ||||||||
Sbjct: 598 attgggccattcaacttgggcaaccc 623
>gb|BQ471753.1|BQ471753 HV03F22r HV Hordeum vulgare subsp. vulgare cDNA clone HV03F22
5-PRIME, mRNA sequence
Length = 599
Score = 119 bits (60), Expect = 1e-025
Identities = 137/163 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 437 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 496
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 497 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 556
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgc 168
|||||||| |||||| | ||||||| || || |||| |||||
Sbjct: 557 attgggccattcaacttgngcaaccccggtgagttcaccatgc 599
>gb|BJ549915.1|BJ549915 BJ549915 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36d06 3', mRNA sequence
Length = 463
Score = 117 bits (59), Expect = 5e-025
Identities = 199/246 (80%)
Strand = Plus / Minus
Query: 128 tgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
|||||| |||||| | ||||||| || || |||| ||||||||| ||||| ||||| ||
Sbjct: 463 tgggccattcaacttgggcaaccncggtgagttcaccatgctggaactggccaaggttgt 404
Query: 188 ccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatcc 247
|||||||||||||||||| | |||| |||||||||||| ||||||| || || ||
Sbjct: 403 ccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgaccc 344
Query: 248 gcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggt 307
||||||||||||||| || |||| | || || |||| || || |||||||||||| |
Sbjct: 343 gcacaagcgcaagccagatatcaccaaggccaaggagcaacttgggtgggagcccaagat 284
Query: 308 tcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcgggga 367
|||||||||| ||||| |||| |||||| || ||||||||||| || || ||||| ||
Sbjct: 283 cgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggcga 224
Query: 368 ccagga 373
||||||
Sbjct: 223 ccagga 218
>gb|BG416704.2|BG416704 HVSMEk0014D01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014D01f, mRNA sequence
Length = 692
Score = 115 bits (58), Expect = 2e-024
Identities = 160/194 (82%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| ||||||||||| || |||| || || ||||| ||||||| |||||||||||
Sbjct: 376 caggcactgaggaaggacccactgacggtgtacggtgactgcaagcacactaggagcttc 435
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|| || ||||| ||| |||| || ||||||||||| || ||||| ||||||||| | |||
Sbjct: 436 cagtacgtctccgatctggttgaggggctgatgaacctgatggagggggagcacgtgggg 495
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
||||||||||| || ||||| | || ||||| ||||| || ||||| ||||||| |||
Sbjct: 496 ccgttcaacctggggaacccggtggagttcaggatgctcgaactggccaaggtggcgcag 555
Query: 192 gacaccatcgaccc 205
||||||||||||||
Sbjct: 556 gacaccatcgaccc 569
>gb|BJ544855.1|BJ544855 BJ544855 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39a18 5', mRNA sequence
Length = 161
Score = 115 bits (58), Expect = 2e-024
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 21 aggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtc 80
||||||||||||||||| || || || |||||||||||||| ||||| || ||||| ||
Sbjct: 3 aggaaggagcctttgacggtttacggcgatggcaagcagaccaggagtttccaatacgtt 62
Query: 81 tcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaac 140
|| |||||||| || ||| |||||| ||| |||||||| || ||||||||||| ||||||
Sbjct: 63 tctgatttggttgaggggttgatgaggctgatggaaggtgatcacattgggccattcaac 122
Query: 141 ctcggcaaccctggagaattcagcatgctggagctggc 178
| |||||||| || || |||| ||||||||| |||||
Sbjct: 123 ttgggcaaccccggtgagttcaccatgctggaactggc 160
>gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h19 5', mRNA sequence
Length = 661
Score = 111 bits (56), Expect = 3e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 531 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 590
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 591 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 650
Query: 126 attgggcc 133
||||||||
Sbjct: 651 attgggcc 658
>gb|BF620279.2|BF620279 HVSMEc0019E20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019E20f, mRNA sequence
Length = 677
Score = 109 bits (55), Expect = 1e-022
Identities = 130/155 (83%)
Strand = Plus / Minus
Query: 51 ggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctc 110
||||||||||| |||||||| || || ||||| ||| |||| || ||||||| |||||
Sbjct: 480 ggcaagcagacgaggagcttccagtacgtctccgatctggttgagcggctgatcaagctg 421
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
||||| | ||||||| | || ||||||||||| || ||||| || || |||| ||||||
Sbjct: 420 atggaggaggagcacgtgggcccgttcaacctggggaacccgggggagttcacgatgctg 361
Query: 171 gagctggctaaggtggtccaggacaccatcgaccc 205
|||||||| |||||||| |||||||||||||||||
Sbjct: 360 gagctggccaaggtggtgcaggacaccatcgaccc 326
Score = 44.1 bits (22), Expect = 0.006
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|||||||||||| |||| ||||||| | || || ||||| ||||| ||||||||||||
Sbjct: 285 ccgcacaagcgcgagccggacatcaccaaggccaaggagctgctcgggtgggagcccaag 226
Query: 306 gt 307
||
Sbjct: 225 gt 224
>gb|BF260520.3|BF260520 HVSMEf0022D16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D16f, mRNA sequence
Length = 691
Score = 109 bits (55), Expect = 1e-022
Identities = 286/363 (78%)
Strand = Plus / Plus
Query: 8 tgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggag 67
|||||| ||||| | ||||||||||||||| | || || ||||||||||| || |||||
Sbjct: 13 tgctcacgcgctaacgaaggagcctttgacggcttacggcgatggcaagcacaccaggag 72
Query: 68 ctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacat 127
|| ||||| | || |||||||| || ||| ||||| ||| |||||||| || |||||
Sbjct: 73 tttacaatacctttctgatttggttgagggggcgatgaggctgatggaaggcgatcacat 132
Query: 128 tgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
|| ||| |||||| |||||||| || || |||| ||||||||| ||||| || || ||
Sbjct: 133 tgtgccattcaactcgggcaaccccggtgagttcaccatgctggaactggccaacgttgt 192
Query: 188 ccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatcc 247
|||||||||||| |||| | |||| |||||||||||| ||||||| || || ||
Sbjct: 193 gcaggacaccatctaccccaacgcgcggatcgagttccgtgagaacacccatgacgaccc 252
Query: 248 gcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggt 307
| ||||||||| ||| || |||| | || || |||| || || |||||||||||| |
Sbjct: 253 gtacaagcgcatgccagatatcaccaaggccaaggagcaacttgggtgggagcccaagat 312
Query: 308 tcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcgggga 367
|||||||||| ||||| |||| |||||| || ||||||||||| || || ||||| ||
Sbjct: 313 cgccctccgtgacggcctgcccctcatggttaccgacttccgcaagcggatattcggcga 372
Query: 368 cca 370
|||
Sbjct: 373 cca 375
>gb|BJ456934.1|BJ456934 BJ456934 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25e05 3', mRNA sequence
Length = 434
Score = 109 bits (55), Expect = 1e-022
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 129 gggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtc 188
|||||||||||||| || ||||| || || |||| |||||||||||||| ||||||||
Sbjct: 426 gggccgttcaacctggggaacccgggggagttcacgatgctggagctggccaaggtggtg 367
Query: 189 caggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccg 248
||||||||||||||||| | || ||||||||||| | |||||||| || || |||
Sbjct: 366 caggacaccatcgaccccaacgcaaggatcgagttccgggccaacaccgccgacgacccg 307
Query: 249 cacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggt 307
|||||||||||||| ||||||| | || || ||||| ||||| ||||||||||||||
Sbjct: 306 cacaagcgcaagccggacatcaccaaggccaaggagctgctcgggtgggagcccaaggt 248
>gb|BU969174.1|BU969174 HB10M08r BC Hordeum vulgare subsp. vulgare cDNA clone HB10M08
5-PRIME, mRNA sequence
Length = 584
Score = 107 bits (54), Expect = 5e-022
Identities = 138/165 (83%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 420 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 479
Query: 66 agctttcaatatgtctcagatttggtggaagg-gctgatgaagctcatggaaggggagca 124
|| || ||||| || || |||||||| || || | |||||| ||| |||||||| || ||
Sbjct: 480 agtttccaatacgtttctgatttggttgagggngttgatgaggctgatggaaggtgatca 539
Query: 125 cattgggccgttcaacctcggcaaccctggagaattcagcatgct 169
||||| ||| |||||| | |||||||| || || |||| ||||||
Sbjct: 540 cattgngccattcaacttgggcaaccccggtgagttcaccatgct 584
>gb|BQ763370.1|BQ763370 EBro02_SQ008_K01_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_K01 5', mRNA sequence
Length = 532
Score = 105 bits (53), Expect = 2e-021
Identities = 113/133 (84%)
Strand = Plus / Plus
Query: 51 ggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctc 110
||||||||||| |||||||| || || ||||| ||| |||| || ||||||||||||||
Sbjct: 7 ggcaagcagacgaggagcttccagtacgtctccgatctggttgaggggctgatgaagctg 66
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
||||| ||||||||| | |||||||||||||| || ||||| || || |||| ||||||
Sbjct: 67 atggagggggagcacgtggggccgttcaacctggggaacccgggggagttcacgatgctg 126
Query: 171 gagctggctaagg 183
|||||||| ||||
Sbjct: 127 gagctggccaagg 139
>gb|AL502423.1|AL502423 AL502423 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I19u 3', mRNA sequence
Length = 645
Score = 103 bits (52), Expect = 7e-021
Identities = 176/216 (81%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 159 ttcagcatgctggagct-ggctaaggtggtccaggacaccatcgacccagaggcgcacat 217
|||| ||||||||| || ||| ||||| |||||||||||||||||||| | |||| ||
Sbjct: 545 ttcaccatgctggaacttggccaaggttgtccaggacaccatcgacccgaacgcgcggat 486
Query: 218 cgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgc 277
|||||||||| ||||||| || || ||||||||||||||||| || |||| | ||
Sbjct: 485 cgagttccgtgagaacacccaggacgacccgcacaagcgcaagccagatatcaccaaggc 426
Query: 278 gaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggt 337
|| |||| ||||| |||||||||||| | |||||||||| ||||| |||| ||||||
Sbjct: 425 caaggagcaactcgggtgggagcccaagatcgccctccgtgacggcctccccctcatggt 366
Query: 338 cactgacttccgcaaacgtatcttcggggaccagga 373
|| ||||||||||| || || ||||| ||||||||
Sbjct: 365 taccgacttccgcaagcggatattcggcgaccagga 330
>gb|BU988947.1|BU988947 HF19D20r HF Hordeum vulgare subsp. vulgare cDNA clone HF19D20
5-PRIME, mRNA sequence
Length = 492
Score = 103 bits (52), Expect = 7e-021
Identities = 106/124 (85%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
|||||||||||||| ||||||||||||||||| || || || |||||||||||||| |||
Sbjct: 369 gttgctcaggcgctaaggaaggagcctttgacggtttacggcgatggcaagcagaccagg 428
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| || || |||||||| || ||| |||||| ||| |||||||| || |||
Sbjct: 429 agtttccaatacgtttctgatttggttgaggggttgatgaggctgatggaaggtgatcac 488
Query: 126 attg 129
||||
Sbjct: 489 attg 492
>gb|AJ436651.1|AJ436651 AJ436651 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200036H03F1, mRNA sequence
Length = 466
Score = 95.6 bits (48), Expect = 2e-018
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | |||| |||||||||||| ||||||| || ||
Sbjct: 13 gtccaggacaccatcgacccgaacgcgcggatcgagttccgtgagaacacccaggacgac 72
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
||||||||||||||||| || |||| | || || |||| ||||| ||||||||||||
Sbjct: 73 ccgcacaagcgcaagccagatatcaccaaggcaaaggagcaactcgggtgggagcccaag 132
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||||| ||||| |||| |||||| || ||||||||||| || || |||||
Sbjct: 133 atcgccctccgtgacggcctccccctcatggttaccgacttccgcaagcggatattcggc 192
Query: 366 gaccagga 373
||||||||
Sbjct: 193 gaccagga 200
>gb|BF259502.2|BF259502 HVSMEf0019I02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019I02f, mRNA sequence
Length = 524
Score = 93.7 bits (47), Expect = 7e-018
Identities = 173/215 (80%)
Strand = Plus / Minus
Query: 159 ttcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatc 218
|||| ||||||| | ||||| ||||| |||||||||||||||||||| | |||| |||
Sbjct: 520 ttcaccatgctgaaactggcaaaggttgtccaggacaccatcgacccgaacgcgcggatc 461
Query: 219 gagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcg 278
||||||||| |||||| || || ||||||||||||||||| || |||| | ||
Sbjct: 460 gagttccgtgagaacactcaggacgacccgcacaagcgcaagccagatatcaccaaggcc 401
Query: 279 aaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtc 338
|| |||| || || |||||||||||| | |||||||||| ||||| |||| ||||||
Sbjct: 400 aaggagcaacttgggtgggagcccaagatcgccctccgtgacggcctccccctcatggtt 341
Query: 339 actgacttccgcaaacgtatcttcggggaccagga 373
|| ||||||||||| || || ||||| ||||||||
Sbjct: 340 accgacttccgcaagcggatattcggcgaccagga 306
>gb|CB877081.1|CB877081 HP03I02T HP Hordeum vulgare subsp. vulgare cDNA clone HP03I02
5-PRIME, mRNA sequence
Length = 340
Score = 93.7 bits (47), Expect = 7e-018
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 165 atgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttc 224
|||||||||||||| |||||||| ||||||||||||||||| | || |||||||||
Sbjct: 31 atgctggagctggccaaggtggtgcaggacaccatcgaccccaacgcaaggatcgagttc 90
Query: 225 cgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagag 284
|| | |||||||| || || ||||||||||||||||| ||||||| | || || |||
Sbjct: 91 cgggccaacaccgccgacgacccgcacaagcgcaagccggacatcaccaaggccaaggag 150
Query: 285 ctcctcggctgggagcccaaggt 307
|| ||||| ||||||||||||||
Sbjct: 151 ctgctcgggtgggagcccaaggt 173
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,631
Number of Sequences: 312970
Number of extensions: 51631
Number of successful extensions: 15063
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14935
Number of HSP's gapped (non-prelim): 99
length of query: 651
length of database: 175,134,539
effective HSP length: 19
effective length of query: 632
effective length of database: 169,188,109
effective search space: 106926884888
effective search space used: 106926884888
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)