BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 240 4e-062
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 240 4e-062
gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. v... 64 6e-009
gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. v... 62 2e-008
gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedl... 60 9e-008
gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subs... 60 9e-008
gb|BU994020.1|BU994020 HM05G16r HM Hordeum vulgare subsp. v... 60 9e-008
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 60 9e-008
gb|CB880675.1|CB880675 HM07G16w HM Hordeum vulgare subsp. v... 60 9e-008
gb|CB881108.1|CB881108 HM08M21w HM Hordeum vulgare subsp. v... 60 9e-008
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 58 4e-007
gb|BG300512.1|BG300512 HVSMEb0017F07f Hordeum vulgare seedl... 44 0.005
gb|BQ463550.1|BQ463550 HI05K23r HI Hordeum vulgare subsp. v... 44 0.005
gb|CB883241.1|CB883241 HQ01K02w HQ Hordeum vulgare subsp. v... 44 0.005
gb|BF621508.3|BF621508 HVSMEa0011D16f Hordeum vulgare seedl... 42 0.021
gb|BF629022.2|BF629022 HVSMEb0009J05f Hordeum vulgare seedl... 42 0.021
gb|BI780739.2|BI780739 EBes01_SQ002_A06_R embryo sac, 4-6 D... 42 0.021
gb|CV063649.1|CV063649 BNEL91f7 Barley EST endosperm librar... 42 0.021
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 40 0.083
gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-a... 40 0.083
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 40 0.083
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 40 0.083
gb|BE601658.3|BE601658 HVSMEh0099B07f Hordeum vulgare 5-45 ... 40 0.083
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 40 0.083
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 40 0.083
gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA li... 40 0.083
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 40 0.083
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 40 0.083
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 40 0.083
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 40 0.083
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 40 0.083
gb|BE421024.1|BE421024 HWM005.A05 ITEC HWM Barley Leaf Libr... 38 0.33
gb|AL505971.1|AL505971 AL505971 Hordeum vulgare Barke devel... 38 0.33
gb|AW982401.2|AW982401 HVSMEg0003C19f Hordeum vulgare pre-a... 38 0.33
gb|BI960004.1|BI960004 HVSMEn0022N07f Hordeum vulgare rachi... 38 0.33
gb|AJ434553.1|AJ434553 AJ434553 S00002 Hordeum vulgare subs... 38 0.33
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 38 0.33
gb|BQ466750.1|BQ466750 HS01H12T HS Hordeum vulgare subsp. v... 38 0.33
gb|BQ467063.1|BQ467063 HS02H12r HS Hordeum vulgare subsp. v... 38 0.33
gb|BQ468391.1|BQ468391 HM01C02T HM Hordeum vulgare subsp. v... 38 0.33
gb|BQ470643.1|BQ470643 HX03J13r HX Hordeum vulgare subsp. v... 38 0.33
gb|BI780638.2|BI780638 EBes01_SQ001_J07_R embryo sac, 4-6 D... 38 0.33
gb|BM371446.2|BM371446 EBma08_SQ002_M06_R maternal, 28 DPA,... 38 0.33
gb|BM369931.2|BM369931 EBro08_SQ002_G02_R root, 3 week, dro... 38 0.33
gb|BM100755.2|BM100755 EBpi01_SQ001_J05_R pistil, 1 DPA, no... 38 0.33
gb|BQ762226.1|BQ762226 EBro01_SQ005_M05 _R root, 3 week, hy... 38 0.33
gb|BU998353.1|BU998353 HI10M13r HI Hordeum vulgare subsp. v... 38 0.33
gb|CA003857.1|CA003857 HS15M18r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA011599.1|CA011599 HT03A03r HT Hordeum vulgare subsp. v... 38 0.33
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 38 0.33
gb|CA026387.1|CA026387 HZ55M09r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CB882258.1|CB882258 HL01F18w HL Hordeum vulgare subsp. v... 38 0.33
gb|CB882790.1|CB882790 HL02N16w HL Hordeum vulgare subsp. v... 38 0.33
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 38 0.33
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 38 0.33
dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar mem... 38 0.33
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 240 bits (121), Expect = 4e-062
Identities = 314/377 (83%), Gaps = 6/377 (1%)
Strand = Plus / Minus
Query: 240 ttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatg 299
|||||||| || || |||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 473 ttccatggtgctggaggcggcgggggcgaagggaacattggcggcacagcagagaacatg 414
Query: 300 gtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgactaga 359
||||||||||||| |||| ||||| |||||||| ||||||||||| || || ||||||
Sbjct: 413 gtgttcttgtcca---cgccatggccttcacccgataaagctaccaacgcagcaactaga 357
Query: 360 ccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttgaac 419
||||| |||||||| || |||| ||| ||||||||| |||| | ||| |||||||||
Sbjct: 356 ccagcattgcccgctagggttggttctgtgtagttgcggttctttcggatgtctttgaac 297
Query: 420 ccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttc 479
||||||||||| || |||||||| ||||| || || | ||| | | |||||| ||||||
Sbjct: 296 ccgtcatggcgatcagggccagccaccatagctccaacaatgatgtgagggttgggcttc 237
Query: 480 ttggcgtccctccacttccaccctcctttgcagccatagtgaacacc---gttcttaggg 536
|||| |||||||||| ||||||| |||||||||||| ||||| ||| ||||| |||
Sbjct: 236 ttggtgtccctccacgtccacccccctttgcagccagggtgaatacctttcttcttcggg 177
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
||||| || || ||||| |||||| || |||||||| |||||||| ||| ||||| ||
Sbjct: 176 atcgacgcaccacggtgatgaacacgcttggggtaatgctttccgtgcccgaccacataa 117
Query: 597 ctcatcttcaaaggatt 613
|||||||||||||||||
Sbjct: 116 ctcatcttcaaaggatt 100
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 240 bits (121), Expect = 4e-062
Identities = 314/377 (83%), Gaps = 6/377 (1%)
Strand = Plus / Plus
Query: 240 ttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatg 299
|||||||| || || |||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 206 ttccatggtgctggaggcggcgggggcgaagggaacattggcggcacagcagagaacatg 265
Query: 300 gtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgactaga 359
||||||||||||| |||| ||||| |||||||| ||||||||||| || || ||||||
Sbjct: 266 gtgttcttgtcca---cgccatggccttcacccgataaagctaccaacgcagcaactaga 322
Query: 360 ccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttgaac 419
||||| |||||||| || |||| ||| ||||||||| |||| | ||| |||||||||
Sbjct: 323 ccagcattgcccgctagggttggttctgtgtagttgcggttctttcggatgtctttgaac 382
Query: 420 ccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttc 479
||||||||||| || |||||||| ||||| || || | ||| | | |||||| ||||||
Sbjct: 383 ccgtcatggcgatcagggccagccaccatagctccaacaatgatgtgagggttgggcttc 442
Query: 480 ttggcgtccctccacttccaccctcctttgcagccatagtgaacacc---gttcttaggg 536
|||| |||||||||| ||||||| |||||||||||| ||||| ||| ||||| |||
Sbjct: 443 ttggtgtccctccacgtccacccccctttgcagccagggtgaatacctttcttcttcggg 502
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
||||| || || ||||| |||||| || |||||||| |||||||| ||| ||||| ||
Sbjct: 503 atcgacgcaccacggtgatgaacacgcttggggtaatgctttccgtgcccgaccacataa 562
Query: 597 ctcatcttcaaaggatt 613
|||||||||||||||||
Sbjct: 563 ctcatcttcaaaggatt 579
>gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15F07
5-PRIME, mRNA sequence
Length = 443
Score = 63.9 bits (32), Expect = 6e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 534 gggatcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacg 593
|||||||| || || ||||| |||||| || |||||||| |||||||| ||| |||||
Sbjct: 443 gggatcgacgcaccacggtgatgaacacgcttggggtaatgctttccgtgcccgaccaca 384
Query: 594 tagctcatcttcaaaggatt 613
|| |||||||||||||||||
Sbjct: 383 taactcatcttcaaaggatt 364
>gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K09
5-PRIME, mRNA sequence
Length = 509
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 301 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 242
Query: 309 tcc 311
|||
Sbjct: 241 tcc 239
>gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009E04f, mRNA sequence
Length = 550
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 250 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 191
Query: 309 tc 310
||
Sbjct: 190 tc 189
>gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012H05F1, mRNA sequence
Length = 477
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 291 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 232
Query: 309 tc 310
||
Sbjct: 231 tc 230
>gb|BU994020.1|BU994020 HM05G16r HM Hordeum vulgare subsp. vulgare cDNA clone HM05G16
5-PRIME, mRNA sequence
Length = 426
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 158 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 99
Query: 309 tc 310
||
Sbjct: 98 tc 97
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 275 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 334
Query: 309 tc 310
||
Sbjct: 335 tc 336
Score = 40.1 bits (20), Expect = 0.083
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 583 acccaaccacgtagctcatcttca 606
|||| |||||||||||||||||||
Sbjct: 621 accccaccacgtagctcatcttca 644
>gb|CB880675.1|CB880675 HM07G16w HM Hordeum vulgare subsp. vulgare cDNA clone HM07G16
3-PRIME, mRNA sequence
Length = 434
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 270 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 329
Query: 309 tc 310
||
Sbjct: 330 tc 331
>gb|CB881108.1|CB881108 HM08M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
3-PRIME, mRNA sequence
Length = 551
Score = 60.0 bits (30), Expect = 9e-008
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 249 gccggcggcggcggaggcgaagggaacatgggcggtactgcagagaacatggtgttcttg 308
|||||||||||||| | | |||||||||||||| || || ||||||||||||||||||
Sbjct: 340 gccggcggcggcggggcggccgggaacatgggcggcacggcggagaacatggtgttcttg 399
Query: 309 tc 310
||
Sbjct: 400 tc 401
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 270 gggaacatgggcggtactgcagagaacatggtgttcttgtc 310
|||||||||||||| || || ||||||||||||||||||||
Sbjct: 528 gggaacatgggcggcacggcggagaacatggtgttcttgtc 488
Score = 40.1 bits (20), Expect = 0.083
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 583 acccaaccacgtagctcatcttca 606
|||| |||||||||||||||||||
Sbjct: 203 accccaccacgtagctcatcttca 180
>gb|BG300512.1|BG300512 HVSMEb0017F07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017F07f, mRNA sequence
Length = 866
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 423 gccggcggcggcggaggcgaag 402
>gb|BQ463550.1|BQ463550 HI05K23r HI Hordeum vulgare subsp. vulgare cDNA clone HI05K23
5-PRIME, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 425 gccggcggcggcggaggcgaag 404
>gb|CB883241.1|CB883241 HQ01K02w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01K02
3-PRIME, mRNA sequence
Length = 513
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 446 gccggcggcggcggaggcgaag 425
>gb|BF621508.3|BF621508 HVSMEa0011D16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011D16f, mRNA sequence
Length = 841
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 332 ccggcggcggcggaggcgaag 312
>gb|BF629022.2|BF629022 HVSMEb0009J05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009J05f, mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 511 ccggcggcggcggaggcgaag 491
>gb|BI780739.2|BI780739 EBes01_SQ002_A06_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_A06 5', mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 467 ccggcggcggcggaggcgaag 447
>gb|CV063649.1|CV063649 BNEL91f7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL91f7 5' similar to unknown
protein, mRNA sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 411 ccggcggcggcggaggcgaag 391
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 298 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 239
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 238 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 195
>gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002G13f, mRNA sequence
Length = 850
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 274 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 215
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 214 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 171
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 374 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 315
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 314 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 271
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 329 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 270
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 269 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 226
>gb|BE601658.3|BE601658 HVSMEh0099B07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099B07f, mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 252 ggcggcggcggaggcgaagg 271
||||||||||||||||||||
Sbjct: 117 ggcggcggcggaggcgaagg 136
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 490 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 431
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 430 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 387
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 422 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 363
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 362 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 319
>gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 3', mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 453 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 512
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 513 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 556
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 323 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 264
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 263 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 220
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.083
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 583 acccaaccacgtagctcatcttca 606
|||| |||||||||||||||||||
Sbjct: 662 accccaccacgtagctcatcttca 639
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.083
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 583 acccaaccacgtagctcatcttca 606
|||| |||||||||||||||||||
Sbjct: 153 accccaccacgtagctcatcttca 130
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 499 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 440
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 439 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 396
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 40.1 bits (20), Expect = 0.083
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagtgaacaccgttcttagggatcgaggcgccccggtggtgaaca 560
||||||||||| ||||| | |||||||| | |||||| || || || | ||| ||||||
Sbjct: 1778 cctcctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaaca 1719
Query: 561 tgcctggggtaacgctttccgaacccaaccacgtagctcatctt 604
|| ||||||| |||||| || || || ||||||||||||||
Sbjct: 1718 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 1675
>gb|BE421024.1|BE421024 HWM005.A05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.A05, mRNA sequence
Length = 1109
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 501 cctcctttgcagccatagt 519
|||||||||||||||||||
Sbjct: 142 cctcctttgcagccatagt 124
>gb|AL505971.1|AL505971 AL505971 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01C13T 5',
mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 214 gccggcggcggcggaggcg 196
>gb|AW982401.2|AW982401 HVSMEg0003C19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003C19f, mRNA sequence
Length = 873
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggagg 265
|||||||||||||||||||
Sbjct: 324 gagccggcggcggcggagg 342
>gb|BI960004.1|BI960004 HVSMEn0022N07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022N07f, mRNA sequence
Length = 626
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 75 gccggcggcggcggaggcg 57
>gb|AJ434553.1|AJ434553 AJ434553 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200041E07F1, mRNA sequence
Length = 483
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggagg 265
|||||||||||||||||||
Sbjct: 20 gagccggcggcggcggagg 38
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 251 cggcggcggcggaggcgaa 269
|||||||||||||||||||
Sbjct: 39 cggcggcggcggaggcgaa 21
>gb|BQ466750.1|BQ466750 HS01H12T HS Hordeum vulgare subsp. vulgare cDNA clone HS01H12
5-PRIME, mRNA sequence
Length = 694
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 238 gccggcggcggcggaggcg 220
>gb|BQ467063.1|BQ467063 HS02H12r HS Hordeum vulgare subsp. vulgare cDNA clone HS02H12
5-PRIME, mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 238 gccggcggcggcggaggcg 220
>gb|BQ468391.1|BQ468391 HM01C02T HM Hordeum vulgare subsp. vulgare cDNA clone HM01C02
5-PRIME, mRNA sequence
Length = 413
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 135 gccggcggcggcggaggcg 117
>gb|BQ470643.1|BQ470643 HX03J13r HX Hordeum vulgare subsp. vulgare cDNA clone HX03J13
5-PRIME, mRNA sequence
Length = 401
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 219 gccggcggcggcggaggcg 201
>gb|BI780638.2|BI780638 EBes01_SQ001_J07_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_J07 5', mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 39 gccggcggcggcggaggcg 21
>gb|BM371446.2|BM371446 EBma08_SQ002_M06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_M06 5', mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggagg 265
|||||||||||||||||||
Sbjct: 202 gagccggcggcggcggagg 220
>gb|BM369931.2|BM369931 EBro08_SQ002_G02_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_G02 5', mRNA sequence
Length = 407
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 291 gccggcggcggcggaggcg 273
>gb|BM100755.2|BM100755 EBpi01_SQ001_J05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ001_J05 5', mRNA sequence
Length = 371
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 246 ggagccggcggcggcggag 264
|||||||||||||||||||
Sbjct: 307 ggagccggcggcggcggag 289
>gb|BQ762226.1|BQ762226 EBro01_SQ005_M05 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_M05 5', mRNA sequence
Length = 735
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 228 gccggcggcggcggaggcg 210
>gb|BU998353.1|BU998353 HI10M13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10M13
5-PRIME, mRNA sequence
Length = 372
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 250 ccggcggcggcggaggcga 268
|||||||||||||||||||
Sbjct: 266 ccggcggcggcggaggcga 284
>gb|CA003857.1|CA003857 HS15M18r HS Hordeum vulgare subsp. vulgare cDNA clone HS15M18
5-PRIME, mRNA sequence
Length = 388
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcg 267
|||||||||||||||||||
Sbjct: 231 gccggcggcggcggaggcg 213
>gb|CA011599.1|CA011599 HT03A03r HT Hordeum vulgare subsp. vulgare cDNA clone HT03A03
5-PRIME, mRNA sequence
Length = 562
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 254 cggcggcggaggcgaaggg 272
|||||||||||||||||||
Sbjct: 107 cggcggcggaggcgaaggg 89
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 251 cggcggcggcggaggcgaa 269
|||||||||||||||||||
Sbjct: 65 cggcggcggcggaggcgaa 47
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,514
Number of Sequences: 312970
Number of extensions: 108514
Number of successful extensions: 48110
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48003
Number of HSP's gapped (non-prelim): 91
length of query: 615
length of database: 175,134,539
effective HSP length: 19
effective length of query: 596
effective length of database: 169,188,109
effective search space: 100836112964
effective search space used: 100836112964
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)