BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3390529.2.1
         (407 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF624193.2|BF624193  HVSMEa0012J04f Hordeum vulgare seedl...   363   3e-099
gb|BG300284.1|BG300284  HVSMEb0011P06f Hordeum vulgare seedl...   363   3e-099
gb|CA024561.1|CA024561  HZ49K12r HZ Hordeum vulgare subsp. v...   319   4e-086
gb|BF266997.3|BF266997  HV_CEa0016K10f Hordeum vulgare seedl...   293   2e-078
gb|BM375220.2|BM375220  EBem06_SQ002_L10_R embryo, 21 DPA, n...   276   5e-073
gb|BU995376.1|BU995376  HM10B01r HM Hordeum vulgare subsp. v...   218   1e-055
gb|CB881502.1|CB881502  HM10A02w HM Hordeum vulgare subsp. v...   167   3e-040
gb|AF474923.1|  Hordeum vulgare subsp. vulgare chalcone isom...   151   2e-035
gb|BI957452.1|BI957452  HVSMEn0009K07f Hordeum vulgare rachi...   100   7e-020
gb|BI956899.1|BI956899  HVSMEn0005O19f Hordeum vulgare rachi...    94   4e-018
gb|CX662506.1|CX662506  EST 322 Expressed sequences from Bar...    82   2e-014
gb|CX662646.1|CX662646  EST 477 Expressed sequences from Bar...    82   2e-014
emb|AJ507395.1|HVU507395  Hordeum vulgare subsp. vulgare rpo...    42   0.014
emb|AJ507396.1|HVU507396  Hordeum vulgare subsp. vulgare mRN...    42   0.014
gb|BQ762901.1|BQ762901  EBro02_SQ006_P10_R root, 3 week, hyd...    40   0.054
gb|BM378047.2|BM378047  EBro08_SQ004_O21_R root, 3 week, dro...    38   0.22 
gb|CA022183.1|CA022183  HZ42G07r HZ Hordeum vulgare subsp. v...    38   0.22 
>gb|BF624193.2|BF624193 HVSMEa0012J04f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0012J04f, mRNA sequence
          Length = 487

 Score =  363 bits (183), Expect = 3e-099
 Identities = 314/357 (87%), Gaps = 3/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 54  catggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgcc 113
           |||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 16  catggccgtgtcggagctggaggtcgacggcgtcgtcttcccgccgctcgcccgcccgcc 75

                                                                       
Query: 114 gggctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggagg 173
           ||||||||||  | | |||||||||| ||||||||||||||| ||  | |||||||| ||
Sbjct: 76  gggctccgcccacgcccacttcctcgccggcgcaggcgtgcgcgggatggagatcggcgg 135

                                                                       
Query: 174 caacttcatcaagttcacggccatcggcgtgtacctggagg---acgcggccgtgcccgc 230
           | ||||||||||||||||||||||||||||||||||| |||   |||| |||||  ||||
Sbjct: 136 ccacttcatcaagttcacggccatcggcgtgtacctgcaggccgacgccgccgtctccgc 195

                                                                       
Query: 231 gctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttctt 290
           ||| |||   ||||||| ||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 196 gctcgccgccaagtgggccggcaagcccgccgccgatctcgcctccgacgccgccttctt 255

                                                                       
Query: 291 ccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgct 350
           ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct: 256 ccgcgacgtcgtcaccggcgagttcgagaagttcacgagggtgacaatgatcctgccgct 315

                                                                    
Query: 351 gacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
           |||||||| ||||||| |||| || |||||||||||||| || |||| |||||||||
Sbjct: 316 gacgggcgcgcagtactcggacaaggtgacggagaactgtgtcgcgtactggaaggc 372
>gb|BG300284.1|BG300284 HVSMEb0011P06f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0011P06f, mRNA sequence
          Length = 536

 Score =  363 bits (183), Expect = 3e-099
 Identities = 314/357 (87%), Gaps = 3/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 54  catggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgcc 113
           |||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 82  catggccgtgtcggagctggaggtcgacggcgtcgtcttcccgccgctcgcccgcccgcc 141

                                                                       
Query: 114 gggctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggagg 173
           ||||||||||  | | |||||||||| ||||||||||||||| ||  | |||||||| ||
Sbjct: 142 gggctccgcccacgcccacttcctcgccggcgcaggcgtgcgcgggatggagatcggcgg 201

                                                                       
Query: 174 caacttcatcaagttcacggccatcggcgtgtacctggagg---acgcggccgtgcccgc 230
           | ||||||||||||||||||||||||||||||||||| |||   |||| |||||  ||||
Sbjct: 202 ccacttcatcaagttcacggccatcggcgtgtacctgcaggccgacgccgccgtctccgc 261

                                                                       
Query: 231 gctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttctt 290
           ||| |||   ||||||| ||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 262 gctcgccgccaagtgggccggcaagcccgccgccgatctcgcctccgacgccgccttctt 321

                                                                       
Query: 291 ccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgct 350
           ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct: 322 ccgcgacgtcgtcaccggcgagttcgagaagttcacgagggtgacaatgatcctgccgct 381

                                                                    
Query: 351 gacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
           |||||||| ||||||| |||| || |||||||||||||| || |||| |||||||||
Sbjct: 382 gacgggcgcgcagtactcggacaaggtgacggagaactgtgtcgcgtactggaaggc 438
>gb|CA024561.1|CA024561 HZ49K12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49K12
           5-PRIME, mRNA sequence
          Length = 499

 Score =  319 bits (161), Expect = 4e-086
 Identities = 268/303 (88%), Gaps = 3/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 108 cccgccgggctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagat 167
           ||||||||||||||||  | | |||||||||| ||||||||||||||| ||  | |||||
Sbjct: 1   cccgccgggctccgcccacgcccacttcctcgccggcgcaggcgtgcgcgggatggagat 60

                                                                       
Query: 168 cggaggcaacttcatcaagttcacggccatcggcgtgtacctggagg---acgcggccgt 224
           ||| ||||||||||||||||||||||||||||||||||||||| |||   |||| |||||
Sbjct: 61  cggcggcaacttcatcaagttcacggccatcggcgtgtacctgcaggccgacgccgccgt 120

                                                                       
Query: 225 gcccgcgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgc 284
             ||||||| |||   ||||||| ||||||| | |||| ||| |||||||||||||||||
Sbjct: 121 ctccgcgctcgccgccaagtgggccggcaagcccgccgccgatctcgcctccgacgccgc 180

                                                                       
Query: 285 cttcttccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcct 344
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 cttcttccgcgacgtcgtcaccggcgagttcgagaagttcacgagggtgacgatgatcct 240

                                                                       
Query: 345 cccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgttctggaa 404
            ||||||||||||| ||||||| |||| || ||||||||||||||||| |||| ||||||
Sbjct: 241 gccgctgacgggcgcgcagtactcggacaaggtgacggagaactgcgtcgcgtactggaa 300

              
Query: 405 ggc 407
           |||
Sbjct: 301 ggc 303
>gb|BF266997.3|BF266997 HV_CEa0016K10f Hordeum vulgare seedling green leaf EST library
           HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
           vulgare cDNA clone HV_CEa0016K10f, mRNA sequence
          Length = 751

 Score =  293 bits (148), Expect = 2e-078
 Identities = 261/298 (87%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 113 cgggctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggag 172
           |||||||||||  | | |||||||||| ||||||||||||||| ||  | |||||||| |
Sbjct: 1   cgggctccgcccacgcccacttcctcgccggcgcaggcgtgcgcgggatggagatcggcg 60

                                                                       
Query: 173 gcaacttcatcaagttcacggccatcggcgtgtacctggagg---acgcggccgtgcccg 229
           || ||||||||||||||||||||||||||||||||||| |||   |||| |||||  |||
Sbjct: 61  gccacttcatcaagttcacggccatcggcgtgtacctgcaggccgacgccgccgtctccg 120

                                                                       
Query: 230 cgctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttct 289
           |||| |||   ||||||| ||||||| | |||| ||| ||||||||||||||||||||||
Sbjct: 121 cgctcgccgccaagtgggccggcaagcccgccgccgatctcgcctccgacgccgccttct 180

                                                                       
Query: 290 tccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgc 349
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 181 tccgcgacgtcgtcaccggcgagttcgagaagttcacgagggtgacgatgatcctgccgc 240

                                                                     
Query: 350 tgacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
           ||||||||| ||||||| |||| || |||||||||||||| || |||| |||||||||
Sbjct: 241 tgacgggcgcgcagtactcggacaaggtgacggagaactgtgtcgcgtactggaaggc 298
>gb|BM375220.2|BM375220 EBem06_SQ002_L10_R embryo, 21 DPA, no treatment, cv Optic, EBem06
           Hordeum vulgare subsp. vulgare cDNA clone
           EBem06_SQ002_L10 5', mRNA sequence
          Length = 375

 Score =  276 bits (139), Expect = 5e-073
 Identities = 240/273 (87%), Gaps = 3/273 (1%)
 Strand = Plus / Plus

                                                                       
Query: 54  catggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgcc 113
           |||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 103 catggccgtgtcggagctggaggtcgacggcgtcgtcttcccgccgctcgcccgcccgcc 162

                                                                       
Query: 114 gggctccgccggctcgcacttcctcggcggcgcaggcgtgcgaggcctcgagatcggagg 173
           ||||||||||  | | |||||||||| ||||||||||||||| ||  | |||||||| ||
Sbjct: 163 gggctccgcccacgcccacttcctcgccggcgcaggcgtgcgcgggatggagatcggcgg 222

                                                                       
Query: 174 caacttcatcaagttcacggccatcggcgtgtacctggag---gacgcggccgtgcccgc 230
           ||||||||||||||||||||||||||||||||||||| ||   ||||| |||||  ||||
Sbjct: 223 caacttcatcaagttcacggccatcggcgtgtacctgcaggccgacgccgccgtctccgc 282

                                                                       
Query: 231 gctggccaagaagtggggcggcaagacggccgacgagctcgcctccgacgccgccttctt 290
           ||| |||   ||||||| ||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 283 gctcgccgccaagtgggccggcaagcccgccgccgatctcgcctccgacgccgccttctt 342

                                            
Query: 291 ccgcgacgtcgtcacgggcgacttcgagaagtt 323
           ||||||||||||||| ||||| |||||||||||
Sbjct: 343 ccgcgacgtcgtcaccggcgagttcgagaagtt 375
>gb|BU995376.1|BU995376 HM10B01r HM Hordeum vulgare subsp. vulgare cDNA clone HM10B01
           5-PRIME, mRNA sequence
          Length = 602

 Score =  218 bits (110), Expect = 1e-055
 Identities = 152/166 (91%)
 Strand = Plus / Plus

                                                                       
Query: 242 agtggggcggcaagacggccgacgagctcgcctccgacgccgccttcttccgcgacgtcg 301
           |||||| ||||||| | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 37  agtgggccggcaagcccgccgccgatctcgcctccgacgccgccttcttccgcgacgtcg 96

                                                                       
Query: 302 tcacgggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagc 361
           |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 97  tcaccggcgagttcgagaagttcacgagggtgacgatgatcctgccgctgacgggcgcgc 156

                                                         
Query: 362 agtacgcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
           ||||| |||| || ||||||||||||||||| |||| |||||||||
Sbjct: 157 agtactcggacaaggtgacggagaactgcgtcgcgtactggaaggc 202
>gb|CB881502.1|CB881502 HM10A02w HM Hordeum vulgare subsp. vulgare cDNA clone HM10A02
           3-PRIME, mRNA sequence
          Length = 630

 Score =  167 bits (84), Expect = 3e-040
 Identities = 111/120 (92%)
 Strand = Plus / Minus

                                                                       
Query: 288 cttccgcgacgtcgtcacgggcgacttcgagaagttcacgagggtgacgatgatcctccc 347
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 630 cttccgcgacgtcgtcaccggcgagttcgagaagttcacgagggtgacgatgatcctgcc 571

                                                                       
Query: 348 gctgacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
           ||||||||||| ||||||| |||| || ||||||||||||||||| |||| |||||||||
Sbjct: 570 gctgacgggcgcgcagtactcggacaaggtgacggagaactgcgtcgcgtactggaaggc 511
>gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isomerase (CHI) gene,
            complete cds
          Length = 11475

 Score =  151 bits (76), Expect = 2e-035
 Identities = 144/166 (86%), Gaps = 3/166 (1%)
 Strand = Plus / Plus

                                                                        
Query: 143  gcgcaggcgtgcgaggcctcgagatcggaggcaacttcatcaagttcacggccatcggcg 202
            ||||||||||||| ||  | |||||||| ||| |||||||||||||||||||||||||||
Sbjct: 7145 gcgcaggcgtgcgcgggatggagatcggcggccacttcatcaagttcacggccatcggcg 7204

                                                                        
Query: 203  tgtacctggagg---acgcggccgtgcccgcgctggccaagaagtggggcggcaagacgg 259
            |||||||| |||   |||| |||||  ||||||| |||   ||||||| ||||||| | |
Sbjct: 7205 tgtacctgcaggccgacgccgccgtctccgcgctcgccgccaagtgggccggcaagcccg 7264

                                                          
Query: 260  ccgacgagctcgcctccgacgccgccttcttccgcgacgtcgtcac 305
            ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7265 ccgccgatctcgcctccgacgccgccttcttccgcgacgtcgtcac 7310

 Score =  121 bits (61), Expect = 2e-026
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                        
Query: 307  ggcgacttcgagaagttcacgagggtgacgatgatcctcccgctgacgggcgagcagtac 366
            ||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct: 7392 ggcgagttcgagaagttcacgagggtgacaatgatcctgccgctgacgggcgcgcagtac 7451

                                                     
Query: 367  gcggagaaagtgacggagaactgcgtggcgttctggaaggc 407
             |||| || |||||||||||||| || |||| |||||||||
Sbjct: 7452 tcggacaaggtgacggagaactgtgtcgcgtactggaaggc 7492

 Score =  111 bits (56), Expect = 2e-023
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                        
Query: 54   catggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgcc 113
            |||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 6936 catggccgtgtcggagctggaggtcgacggcgtcgtcttcccgccgctcgcccgcccgcc 6995

                                                
Query: 114  gggctccgccggctcgcacttcctcggcggcgcagg 149
            ||||||||||  | | |||||||||| |||||||||
Sbjct: 6996 gggctccgcccacgcccacttcctcgccggcgcagg 7031
>gb|BI957452.1|BI957452 HVSMEn0009K07f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0009K07f, mRNA sequence
          Length = 668

 Score = 99.6 bits (50), Expect = 7e-020
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                       
Query: 54  catggccgtgccggaggtggtggtcgacggcgtcgtcttcccgccggtggcccgcccgcc 113
           |||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 83  catggccgtgtcggagctggaggtcgacggcgtcgtcttcccgccgctcgcccgcccgcc 142

                     
Query: 114 gggctccgcc 123
           ||||||||||
Sbjct: 143 gggctccgcc 152
>gb|BI956899.1|BI956899 HVSMEn0005O19f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0005O19f, mRNA sequence
          Length = 885

 Score = 93.7 bits (47), Expect = 4e-018
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 325 acgagggtgacgatgatcctcccgctgacgggcgagcagtacgcggagaaagtgacggag 384
           ||||||||||| |||||||| ||||||||||||| ||||||| |||| || |||||||||
Sbjct: 20  acgagggtgacaatgatcctgccgctgacgggcgcgcagtactcggacaaggtgacggag 79

                                  
Query: 385 aactgcgtggcgttctggaaggc 407
           ||||| || |||| |||||||||
Sbjct: 80  aactgtgtcgcgtactggaaggc 102
>gb|CX662506.1|CX662506 EST 322 Expressed sequences from Barley Hordeum vulgare subsp.
           vulgare cDNA clone P322 5', mRNA sequence
          Length = 513

 Score = 81.8 bits (41), Expect = 2e-014
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 339 gatcctcccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgtt 398
           |||||| ||||||||||||| ||||||| |||| || ||||||||||||||||| |||| 
Sbjct: 1   gatcctgccgctgacgggcgcgcagtactcggacaaggtgacggagaactgcgtcgcgta 60

                    
Query: 399 ctggaaggc 407
           |||||||||
Sbjct: 61  ctggaaggc 69
>gb|CX662646.1|CX662646 EST 477 Expressed sequences from Barley Hordeum vulgare subsp.
           vulgare cDNA clone P477 5', mRNA sequence
          Length = 513

 Score = 81.8 bits (41), Expect = 2e-014
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 339 gatcctcccgctgacgggcgagcagtacgcggagaaagtgacggagaactgcgtggcgtt 398
           |||||| ||||||||||||| ||||||| |||| || ||||||||||||||||| |||| 
Sbjct: 1   gatcctgccgctgacgggcgcgcagtactcggacaaggtgacggagaactgcgtcgcgta 60

                    
Query: 399 ctggaaggc 407
           |||||||||
Sbjct: 61  ctggaaggc 69
>emb|AJ507395.1|HVU507395 Hordeum vulgare subsp. vulgare rpoT gene for DNA-directed RNA
           polymerase, chloroplast precursor, exons 1-19
          Length = 10573

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 94  ccgccggtggcccgcccgccg 114
           |||||||||||||||||||||
Sbjct: 582 ccgccggtggcccgcccgccg 562
>emb|AJ507396.1|HVU507396 Hordeum vulgare subsp. vulgare mRNA for DNA-directed RNA
           polymerase, chloroplast precursor (rpoT gene)
          Length = 3655

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 94  ccgccggtggcccgcccgccg 114
           |||||||||||||||||||||
Sbjct: 431 ccgccggtggcccgcccgccg 411
>gb|BQ762901.1|BQ762901 EBro02_SQ006_P10_R root, 3 week, hydroponic grown, low nitrogen, cv
           Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
           EBro02_SQ006_P10 5', mRNA sequence
          Length = 659

 Score = 40.1 bits (20), Expect = 0.054
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggcggcaagacggccgacga 266
           ||||||||||||||||||||
Sbjct: 216 ggcggcaagacggccgacga 235
>gb|BM378047.2|BM378047 EBro08_SQ004_O21_R root, 3 week, drought-stressed, cv Optic, EBro08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ004_O21 5', mRNA sequence
          Length = 522

 Score = 38.2 bits (19), Expect = 0.22
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  ggccgtgccggaggtggtg 75
           |||||||||||||||||||
Sbjct: 103 ggccgtgccggaggtggtg 121
>gb|CA022183.1|CA022183 HZ42G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42G07
           5-PRIME, mRNA sequence
          Length = 606

 Score = 38.2 bits (19), Expect = 0.22
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 276 cgacgccgccttcttccgc 294
           |||||||||||||||||||
Sbjct: 550 cgacgccgccttcttccgc 532
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,144
Number of Sequences: 312970
Number of extensions: 82144
Number of successful extensions: 24688
Number of sequences better than  0.5: 17
Number of HSP's better than  0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24659
Number of HSP's gapped (non-prelim): 23
length of query: 407
length of database: 175,134,539
effective HSP length: 18
effective length of query: 389
effective length of database: 169,501,079
effective search space: 65935919731
effective search space used: 65935919731
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)