BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 33531.2.1
(724 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469847.1|BJ469847 BJ469847 K. Sato unpublished cDNA li... 107 5e-022
gb|BJ476932.1|BJ476932 BJ476932 K. Sato unpublished cDNA li... 107 5e-022
gb|CD662217.1|CD662217 UCRHV18_01ag01_b1 Drought-stressed D... 107 5e-022
gb|BE454300.3|BE454300 HVSMEh0093J13f Hordeum vulgare 5-45 ... 54 7e-006
gb|BQ459828.1|BQ459828 HA07P11r HA Hordeum vulgare subsp. v... 54 7e-006
gb|BQ460313.1|BQ460313 HA06J23r HA Hordeum vulgare subsp. v... 54 7e-006
gb|BQ460558.1|BQ460558 HA09C17r HA Hordeum vulgare subsp. v... 54 7e-006
gb|BQ657235.1|BQ657235 HA09C17u HA Hordeum vulgare subsp. v... 54 7e-006
gb|BQ657540.1|BQ657540 HA07P11u HA Hordeum vulgare subsp. v... 54 7e-006
gb|BI780902.2|BI780902 EBma05_SQ001_G18_R maternal, 12 DPA,... 54 7e-006
gb|BU968921.1|BU968921 HB08P21r BC Hordeum vulgare subsp. v... 54 7e-006
gb|BU970036.1|BU970036 HB13G12r BC Hordeum vulgare subsp. v... 54 7e-006
gb|BU982143.1|BU982143 HA25K09r HA Hordeum vulgare subsp. v... 54 7e-006
gb|BU983690.1|BU983690 HA30K16r HA Hordeum vulgare subsp. v... 54 7e-006
gb|CD662259.1|CD662259 UCRHV18_01bd04_b1 Drought-stressed D... 54 7e-006
gb|BI959784.1|BI959784 HVSMEn0021H10f Hordeum vulgare rachi... 38 0.39
>gb|BJ469847.1|BJ469847 BJ469847 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n13 5', mRNA sequence
Length = 515
Score = 107 bits (54), Expect = 5e-022
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 123 ggagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccaggggaa 182
Query: 349 gcacaactag 358
||||||||||
Sbjct: 183 gcacaactag 192
>gb|BJ476932.1|BJ476932 BJ476932 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37n13 3', mRNA sequence
Length = 469
Score = 107 bits (54), Expect = 5e-022
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 335 ggagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccaggggaa 276
Query: 349 gcacaactag 358
||||||||||
Sbjct: 275 gcacaactag 266
>gb|CD662217.1|CD662217 UCRHV18_01ag01_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01ag01, mRNA sequence
Length = 791
Score = 107 bits (54), Expect = 5e-022
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 407 ggagtgcctgatgaggaggaccctcgtcgctcacaccgactacatctacacccaggggaa 348
Query: 349 gcacaactag 358
||||||||||
Sbjct: 347 gcacaactag 338
>gb|BE454300.3|BE454300 HVSMEh0093J13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093J13f, mRNA sequence
Length = 531
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 279 cacacggactacatctacacccaggagaatcacaactag 317
>gb|BQ459828.1|BQ459828 HA07P11r HA Hordeum vulgare subsp. vulgare cDNA clone HA07P11
5-PRIME, mRNA sequence
Length = 472
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 259 cacacggactacatctacacccaggagaatcacaactag 297
>gb|BQ460313.1|BQ460313 HA06J23r HA Hordeum vulgare subsp. vulgare cDNA clone HA06J23
5-PRIME, mRNA sequence
Length = 493
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 280 cacacggactacatctacacccaggagaatcacaactag 318
>gb|BQ460558.1|BQ460558 HA09C17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09C17
5-PRIME, mRNA sequence
Length = 489
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 276 cacacggactacatctacacccaggagaatcacaactag 314
>gb|BQ657235.1|BQ657235 HA09C17u HA Hordeum vulgare subsp. vulgare cDNA clone HA09C17
3-PRIME, mRNA sequence
Length = 489
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 214 cacacggactacatctacacccaggagaatcacaactag 176
>gb|BQ657540.1|BQ657540 HA07P11u HA Hordeum vulgare subsp. vulgare cDNA clone HA07P11
3-PRIME, mRNA sequence
Length = 472
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 214 cacacggactacatctacacccaggagaatcacaactag 176
>gb|BI780902.2|BI780902 EBma05_SQ001_G18_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_G18 5', mRNA sequence
Length = 497
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 273 cacacggactacatctacacccaggagaatcacaactag 311
>gb|BU968921.1|BU968921 HB08P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB08P21
5-PRIME, mRNA sequence
Length = 493
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 280 cacacggactacatctacacccaggagaatcacaactag 318
>gb|BU970036.1|BU970036 HB13G12r BC Hordeum vulgare subsp. vulgare cDNA clone HB13G12
5-PRIME, mRNA sequence
Length = 393
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 297 cacacggactacatctacacccaggagaatcacaactag 335
>gb|BU982143.1|BU982143 HA25K09r HA Hordeum vulgare subsp. vulgare cDNA clone HA25K09
5-PRIME, mRNA sequence
Length = 440
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 259 cacacggactacatctacacccaggagaatcacaactag 297
>gb|BU983690.1|BU983690 HA30K16r HA Hordeum vulgare subsp. vulgare cDNA clone HA30K16
5-PRIME, mRNA sequence
Length = 510
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 320 cacaccgactacatctacacccaggggaagcacaactag 358
||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 277 cacacggactacatctacacccaggagaatcacaactag 315
>gb|CD662259.1|CD662259 UCRHV18_01bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01bd04, mRNA sequence
Length = 371
Score = 54.0 bits (27), Expect = 7e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 332 atctacacccaggggaagcacaactag 358
|||||||||||||||||||||||||||
Sbjct: 363 atctacacccaggggaagcacaactag 337
>gb|BI959784.1|BI959784 HVSMEn0021H10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021H10f, mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 256 atgtgaggacgacgacggagacg 278
||||||||| |||||||||||||
Sbjct: 559 atgtgaggaggacgacggagacg 537
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,494
Number of Sequences: 312970
Number of extensions: 78494
Number of successful extensions: 24554
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24536
Number of HSP's gapped (non-prelim): 18
length of query: 724
length of database: 175,134,539
effective HSP length: 19
effective length of query: 705
effective length of database: 169,188,109
effective search space: 119277616845
effective search space used: 119277616845
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)