BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3345642.2.1
         (600 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BG417087.1|BG417087  HVSMEk0016D06f Hordeum vulgare testa...   351   2e-095
gb|BI956176.1|BI956176  HVSMEm0025O15f Hordeum vulgare green...   307   2e-082
gb|CA018769.1|CA018769  HV09J15r HV Hordeum vulgare subsp. v...   147   5e-034
gb|BI777829.2|BI777829  EBro08_SQ002_D17_R root, 3 week, dro...   145   2e-033
gb|BJ447514.1|BJ447514  BJ447514 K. Sato unpublished cDNA li...    62   2e-008
gb|BJ455274.1|BJ455274  BJ455274 K. Sato unpublished cDNA li...    62   2e-008
gb|BE060385.2|BE060385  HVSMEg0012C17f Hordeum vulgare pre-a...    40   0.081
gb|BG343589.1|BG343589  HVSMEg0006H13f Hordeum vulgare pre-a...    40   0.081
gb|AV909171.1|AV909171  AV909171 K. Sato unpublished cDNA li...    40   0.081
gb|AV911054.1|AV911054  AV911054 K. Sato unpublished cDNA li...    40   0.081
gb|AV916779.1|AV916779  AV916779 K. Sato unpublished cDNA li...    40   0.081
gb|AV922076.1|AV922076  AV922076 K. Sato unpublished cDNA li...    40   0.081
gb|CA032293.1|CA032293  HX12J15r HX Hordeum vulgare subsp. v...    40   0.081
gb|CA032787.1|CA032787  HX14D07r HX Hordeum vulgare subsp. v...    40   0.081
gb|BJ544949.1|BJ544949  BJ544949 K. Sato unpublished cDNA li...    40   0.081
gb|BJ546433.1|BJ546433  BJ546433 K. Sato unpublished cDNA li...    40   0.081
gb|BJ549178.1|BJ549178  BJ549178 K. Sato unpublished cDNA li...    40   0.081
gb|BJ549963.1|BJ549963  BJ549963 K. Sato unpublished cDNA li...    40   0.081
gb|CB881764.1|CB881764  HM10N01w HM Hordeum vulgare subsp. v...    40   0.081
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
           HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
           clone HVSMEk0016D06f, mRNA sequence
          Length = 490

 Score =  351 bits (177), Expect = 2e-095
 Identities = 345/401 (86%)
 Strand = Plus / Plus

                                                                       
Query: 88  atcagctccaagattgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
           |||||||| |||||||| ||| |||||||||| ||||||||||||||||| || ||||||
Sbjct: 12  atcagctcaaagattgacccatatacttgtgggtgggcttttggaatgaatatatttgac 71

                                                                       
Query: 148 ttgatagcttggaggaaggcaaacgccacatcattgtatcattattggcaagagcaaaat 207
            | || ||||||||||| ||||| || |||||  | |||||||||||||| || || |||
Sbjct: 72  ctaattgcttggaggaaagcaaatgcgacatcgctttatcattattggcaggaacagaat 131

                                                                       
Query: 208 tctgacctattgctctggagaacaggaactcttcctgcaggccttttgacattttatggc 267
            |||| | |||||| ||||| || || || ||||| ||||||||  ||||||| ||||||
Sbjct: 132 gctgatcaattgctttggaggacgggcacacttccagcaggcctcctgacattctatggc 191

                                                                       
Query: 268 ctgatggagcccctagaccgcagatggcatgtcttgggtctcgggtatgatgtagacata 327
           |||||||||||||||||||| ||||||||  | |||||||| ||||||||||||||||||
Sbjct: 192 ctgatggagcccctagaccggagatggcacctattgggtcttgggtatgatgtagacata 251

                                                                       
Query: 328 gatgatcgtctgattgagagtgctgctgttgtgcactataatggaaacatgaaaccctgg 387
           ||||| ||  |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 252 gatgaccggttgattgagagtgctgctgttgtgcactacaatgggaacatgaaaccctgg 311

                                                                       
Query: 388 ctgaagctggctattcgccgttacaagtatatatgggaacggtatgtgaatatctcacac 447
           |||||| |||| |||| ||| ||||||| ||||||||| ||| |||| ||| ||||||||
Sbjct: 312 ctgaagttggccattcaccggtacaagtctatatgggagcggcatgtcaatttctcacac 371

                                                    
Query: 448 ccgtatgttagagagtgtatgttgcattagaaagtctgcaa 488
           ||  || |||||||||||||||| || |||  |||||||||
Sbjct: 372 ccacatattagagagtgtatgtttcactaggcagtctgcaa 412
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
           HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
          Length = 674

 Score =  307 bits (155), Expect = 2e-082
 Identities = 320/375 (85%)
 Strand = Plus / Plus

                                                                       
Query: 88  atcagctccaagattgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
           |||||||| |||||||| ||| |||||||||| ||||||||||||||||| || ||||||
Sbjct: 190 atcagctcaaagattgacccatatacttgtgggtgggcttttggaatgaatatatttgac 249

                                                                       
Query: 148 ttgatagcttggaggaaggcaaacgccacatcattgtatcattattggcaagagcaaaat 207
            | || ||||||||||| ||||| || |||||  | |||||||||||||| || || |||
Sbjct: 250 ctaattgcttggaggaaagcaaatgcgacatcgctttatcattattggcaggaacagaat 309

                                                                       
Query: 208 tctgacctattgctctggagaacaggaactcttcctgcaggccttttgacattttatggc 267
            |||| | |||||| ||||| || || || ||||| ||||||||  ||||||| ||||||
Sbjct: 310 gctgatcaattgctttggaggacgggcacacttccagcaggcctcctgacattctatggc 369

                                                                       
Query: 268 ctgatggagcccctagaccgcagatggcatgtcttgggtctcgggtatgatgtagacata 327
           |||||||||||||||||||| ||||||||  | |||||||| ||||||||||||||||||
Sbjct: 370 ctgatggagcccctagaccggagatggcacctattgggtcttgggtatgatgtagacata 429

                                                                       
Query: 328 gatgatcgtctgattgagagtgctgctgttgtgcactataatggaaacatgaaaccctgg 387
           ||||| ||  |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 430 gatgaccggttgattgagagtgctgctgttgtgcactacaatgggaacatgaaaccctgg 489

                                                                       
Query: 388 ctgaagctggctattcgccgttacaagtatatatgggaacggtatgtgaatatctcacac 447
           |||||| |||| |||| ||  ||||||| |||||||| |  | |||| ||| ||||||||
Sbjct: 490 ctgaagttggccattcacccgtacaagtctatatggggagcggatgtcaatttctcacac 549

                          
Query: 448 ccgtatgttagagag 462
           ||  || ||||||||
Sbjct: 550 ccacatattagagag 564

 Score = 65.9 bits (33), Expect = 1e-009
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 10  aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaa 62
           ||||| ||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct: 112 aatgttattggggcagtggagacgtgtttagagtcatttcatcggtatcacaa 164
>gb|CA018769.1|CA018769 HV09J15r HV Hordeum vulgare subsp. vulgare cDNA clone HV09J15
           5-PRIME, mRNA sequence
          Length = 586

 Score =  147 bits (74), Expect = 5e-034
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                       
Query: 10  aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
           ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 416 aatgttattggggcagtggagacgtgtttagagtcatttcatcggtatcacaaatatctt 475

                                                                       
Query: 70  aatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggctttt 129
           ||||| ||||| || |  |||||||| |||||||| ||| |||||||||| |||||||||
Sbjct: 476 aatttctcgcaaccaataatcagctcaaagattgacccatatacttgtgggtgggctttt 535

                                                             
Query: 130 ggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatc 179
           |||||||| || |||||| | || ||||||||||| ||||| || |||||
Sbjct: 536 ggaatgaatatatttgacctaattgcttggaggaaagcaaatgcgacatc 585
>gb|BI777829.2|BI777829 EBro08_SQ002_D17_R root, 3 week, drought-stressed, cv Optic, EBro08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ002_D17 5', mRNA sequence
          Length = 562

 Score =  145 bits (73), Expect = 2e-033
 Identities = 161/189 (85%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  aatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatcta 69
           ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 347 aatgttattggggcagtggagacgtgtttagagtcatttcatcggtatcacaaatatctt 406

                                                                       
Query: 70  aatttttcgcatcctactatcagctccaagattgatccaca-tacttgtggatgggcttt 128
           ||||| ||||| || |  |||||||| |||||||| ||| | ||||||||| ||||||||
Sbjct: 407 aatttctcgcaaccaataatcagctcaaagattgacccatattacttgtgggtgggcttt 466

                                                                       
Query: 129 tggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtatca 188
           ||||||||| || |||||| | || ||||||||||| ||||| || |||||  | |||||
Sbjct: 467 tggaatgaatatatttgacctaattgcttggaggaaagcaaatgcgacatcgctttatca 526

                    
Query: 189 ttattggca 197
           |||||||||
Sbjct: 527 ttattggca 535
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak16a24 5', mRNA sequence
          Length = 630

 Score = 61.9 bits (31), Expect = 2e-008
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
           ||||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct: 117 ttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgac 163
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak16a24 3', mRNA sequence
          Length = 565

 Score = 61.9 bits (31), Expect = 2e-008
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 101 ttgatccacatacttgtggatgggcttttggaatgaacatttttgac 147
           ||||||||| | ||||||| |||||||||||||||||||| ||||||
Sbjct: 453 ttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgac 407
>gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-anthesis spike EST library
           HVcDNA0008 (white to yellow anther) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEg0012C17f, mRNA sequence
          Length = 785

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 tgtggatgggcttttggaatgaac 138
           ||||| ||||||||||||||||||
Sbjct: 373 tgtggctgggcttttggaatgaac 396
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
           HVcDNA0008 (white to yellow anther) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
          Length = 1018

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 tgtggatgggcttttggaatgaac 138
           ||||| ||||||||||||||||||
Sbjct: 373 tgtggctgggcttttggaatgaac 396
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak11o03 5', mRNA sequence
          Length = 586

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 107 tggcatgtcctgggtctcgggtat 130
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak11o03 3', mRNA sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 421 tggcatgtcctgggtctcgggtat 398
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags19j21 5', mRNA sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 tgtggatgggcttttggaatgaac 138
           ||||| ||||||||||||||||||
Sbjct: 206 tgtggctgggcttttggaatgaac 229
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags19j21 3', mRNA sequence
          Length = 643

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 115 tgtggatgggcttttggaatgaac 138
           ||||| ||||||||||||||||||
Sbjct: 518 tgtggctgggcttttggaatgaac 495
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
           5-PRIME, mRNA sequence
          Length = 653

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 115 tgtggatgggcttttggaatgaac 138
           ||||| ||||||||||||||||||
Sbjct: 531 tgtggctgggcttttggaatgaac 508
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
           5-PRIME, mRNA sequence
          Length = 529

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 356 tggcatgtcctgggtctcgggtat 379

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 18  tggagcagtggaaacttgtttagagtcgtttcatcggtat 57
           ||||||||| ||||| || || | ||||||||||||||||
Sbjct: 82  tggagcagtagaaacatgctttgggtcgtttcatcggtat 121
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak41d13 5', mRNA sequence
          Length = 589

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 110 tggcatgtcctgggtctcgggtat 133
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak41d13 3', mRNA sequence
          Length = 525

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 420 tggcatgtcctgggtctcgggtat 397
>gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags25a14 5', mRNA sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 18  tggagcagtggaaacttgtttagagtcgtttcatcggtat 57
           ||||||||| ||||| || || | ||||||||||||||||
Sbjct: 357 tggagcagtagaaacatgctttgggtcgtttcatcggtat 396
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags25a14 3', mRNA sequence
          Length = 625

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 422 tggcatgtcctgggtctcgggtat 399
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
           3-PRIME, mRNA sequence
          Length = 535

 Score = 40.1 bits (20), Expect = 0.081
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 292 tggcatgtcttgggtctcgggtat 315
           ||||||||| ||||||||||||||
Sbjct: 470 tggcatgtcctgggtctcgggtat 447
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,075
Number of Sequences: 312970
Number of extensions: 48075
Number of successful extensions: 12402
Number of sequences better than  0.5: 19
Number of HSP's better than  0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12367
Number of HSP's gapped (non-prelim): 34
length of query: 600
length of database: 175,134,539
effective HSP length: 19
effective length of query: 581
effective length of database: 169,188,109
effective search space: 98298291329
effective search space used: 98298291329
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)