BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. v... 343 4e-093
gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedl... 323 4e-087
gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA li... 323 4e-087
gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. v... 315 1e-084
gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. v... 315 1e-084
gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. v... 180 4e-044
gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, ... 143 8e-033
gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. v... 137 5e-031
gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedl... 133 8e-030
gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. v... 133 8e-030
gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. v... 131 3e-029
gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-a... 129 1e-028
gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. v... 121 3e-026
gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, ... 117 5e-025
gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. v... 111 3e-023
gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike... 105 2e-021
gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green... 92 3e-017
gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA li... 68 4e-010
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 42 0.022
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 40 0.087
gb|BM816529.1|BM816529 HC111H03_T3.ab1 HC Hordeum vulgare s... 38 0.35
gb|BQ467692.1|BQ467692 HS04J06r HS Hordeum vulgare subsp. v... 38 0.35
emb|AM087611.1| Hordeum vulgare partial probable ltp pseudo... 38 0.35
>gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
5-PRIME, mRNA sequence
Length = 598
Score = 343 bits (173), Expect = 4e-093
Identities = 344/401 (85%)
Strand = Plus / Minus
Query: 1 cccgttagagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacat 60
||||| ||||||||||||||||||||||| || | |||||||||||||| ||| |||
Sbjct: 569 cccgtcagagcttgttagtgaaactgtcatttctatcgtttctggtgacttgacatgcat 510
Query: 61 aacaagattgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaac 120
||| ||||||||| ||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 509 aactagattgtaggtcttcccatcttctatgttcatgccccagaacccagggttgtaaat 450
Query: 121 accaacaccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtt 180
|||||||| ||| || || ||||| || || |||||||| || |||||||| ||||
Sbjct: 449 gccaacaccgccaactgggcagttatcacagagaacctccattcttagagcaaccttgtt 390
Query: 181 tcgactgaaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgat 240
||||||||||||||| ||||| || || ||||||||| || ||||| |||||||||||
Sbjct: 389 tcgactgaaacatgacgtacggtctgttcccacaaatatggaagagtcatctccaatgat 330
Query: 241 ggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttact 300
||||||||| | ||| ||||||||||||||| ||||||| |||||||| ||||| |||||
Sbjct: 329 ggaccatggattaatatttgatggagtatgggggcctcctgcttcaaaacctctattact 270
Query: 301 aacaagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatccc 360
||||||||| |||||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct: 269 aacaagttctgcccatattccaccagctcctgcatggttgatctcctcaaagaatattcc 210
Query: 361 gaacagtgtatcagggatcttccgagcaagctgcggcgagg 401
||||| |||||||||||||| |||||||| ||||| ||||
Sbjct: 209 aaacagcgtatcagggatctttcgagcaaggtgcggtgagg 169
>gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I22f, mRNA sequence
Length = 865
Score = 323 bits (163), Expect = 4e-087
Identities = 355/419 (84%)
Strand = Plus / Minus
Query: 8 gagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaaga 67
||||||| || |||||||||||| || | | ||||| ||| |||||| ||||||| |||
Sbjct: 605 gagcttgctaatgaaactgtcaattctgcagcttctgctgatttaacatacataactaga 546
Query: 68 ttgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaaca 127
|||||| |||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 545 ttgtaggtctttccatcttctatgttcatgccccagaacccagggttgtaaatgccaaca 486
Query: 128 ccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgactg 187
|||| | || || | ||| || || ||||||||||| ||||| | ||||||||||||
Sbjct: 485 ccactggctgggcagtcatcacagagaacctccatcctaagagcgataatgtttcgactg 426
Query: 188 aaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatggaccat 247
||||||||||||||||| ||| ||||||||| || |||||||| ||||| || ||||||
Sbjct: 425 aaacatgatgtacgatcagtcgccacaaatatggaagagtcgtcgccaattatagaccat 366
Query: 248 gggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttactaacaagt 307
|||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 365 gggtcaatatttgatggcgtatggagtcctccagcttcaaaacctctattactaacaagt 306
Query: 308 tcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccgaacagt 367
|| |||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||
Sbjct: 305 tctgcccatatgccaccggctcctgcatggttgatctcctcaaaaaacatcccaaacagt 246
Query: 368 gtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
|| || || ||||| || |||||||| | ||||| || ||| |||||| ||||||||
Sbjct: 245 gtgtctggtatctttcgggcaagctgtgatgaggcatcaaccttgagggtggccgtctg 187
>gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 5', mRNA sequence
Length = 644
Score = 323 bits (163), Expect = 4e-087
Identities = 355/419 (84%)
Strand = Plus / Minus
Query: 8 gagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaaga 67
||||||| || |||||||||||| || | | ||||| ||| |||||| ||||||| |||
Sbjct: 620 gagcttgctaatgaaactgtcaattctgcagcttctgctgatttaacatacataactaga 561
Query: 68 ttgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaaca 127
|||||| |||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 560 ttgtaggtctttccatcttctatgttcatgccccagaacccagggttgtaaatgccaaca 501
Query: 128 ccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgactg 187
|||| | || || | ||| || || ||||||||||| ||||| | ||||||||||||
Sbjct: 500 ccactggctgggcagtcatcacagagaacctccatcctaagagcgataatgtttcgactg 441
Query: 188 aaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatggaccat 247
||||||||||||||||| ||| ||||||||| || |||||||| ||||| || ||||||
Sbjct: 440 aaacatgatgtacgatcagtcgccacaaatatggaagagtcgtcgccaattatagaccat 381
Query: 248 gggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttactaacaagt 307
|||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 380 gggtcaatatttgatggcgtatggagtcctccagcttcaaaacctctattactaacaagt 321
Query: 308 tcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccgaacagt 367
|| |||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||
Sbjct: 320 tctgcccatatgccaccggctcctgcatggttgatctcctcaaaaaacatcccaaacagt 261
Query: 368 gtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
|| || || ||||| || |||||||| | ||||| || ||| |||||| ||||||||
Sbjct: 260 gtgtctggtatctttcgggcaagctgtgatgaggcatcaaccttgagggtggccgtctg 202
>gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49N06
5-PRIME, mRNA sequence
Length = 598
Score = 315 bits (159), Expect = 1e-084
Identities = 345/407 (84%)
Strand = Plus / Minus
Query: 20 gaaactgtcaagtcagttgtttctggtgacttaacaaacataacaagattgtagaccttt 79
||||||||||| || | | ||||| ||| |||||| ||||||| ||||||||| ||||
Sbjct: 598 gaaactgtcaattctgcagcttctgctgatttaacatacataactagattgtaggtcttt 539
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
|| |||||||||||||||||||| ||||| |||||||||| |||||||||| | ||
Sbjct: 538 ccatcttctatgttcatgccccagaacccagggttgtaaatgccaacaccactggctggg 479
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| | ||| || || ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 478 cagtcatcacagagaacctccatcctaagagcgataatgtttcgactgaaacatgatgta 419
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
||||| ||| ||||||||| || |||||||| ||||| || |||||||||||||| |||
Sbjct: 418 cgatcagtcgccacaaatatggaagagtcgtcgccaattatagaccatgggtcaatattt 359
Query: 260 gatggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatatg 319
||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 358 gatggcgtatggagtcctccagcttcaaaacctctattactaacaagttctgcccatatg 299
Query: 320 ccaccagcccctgcatggttgatctcctcaaagaagatcccgaacagtgtatcagggatc 379
||||| || ||||||||||||||||||||||| || ||||| |||||||| || || |||
Sbjct: 298 ccaccggctcctgcatggttgatctcctcaaaaaacatcccaaacagtgtgtctggtatc 239
Query: 380 ttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
|| || |||||||| | ||||| || ||| |||||| ||||||||
Sbjct: 238 tttcgggcaagctgtgatgaggcatcaaccttgagggtggccgtctg 192
>gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65L02
5-PRIME, mRNA sequence
Length = 598
Score = 315 bits (159), Expect = 1e-084
Identities = 345/407 (84%)
Strand = Plus / Minus
Query: 20 gaaactgtcaagtcagttgtttctggtgacttaacaaacataacaagattgtagaccttt 79
||||||||||| || | | ||||| ||| |||||| ||||||| ||||||||| ||||
Sbjct: 598 gaaactgtcaattctgcagcttctgctgatttaacatacataactagattgtaggtcttt 539
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
|| |||||||||||||||||||| ||||| |||||||||| |||||||||| | ||
Sbjct: 538 ccatcttctatgttcatgccccagaacccagggttgtaaatgccaacaccactggctggg 479
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| | ||| || || ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 478 cagtcatcacagagaacctccatcctaagagcgataatgtttcgactgaaacatgatgta 419
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
||||| ||| ||||||||| || |||||||| ||||| || |||||||||||||| |||
Sbjct: 418 cgatcagtcgccacaaatatggaagagtcgtcgccaattatagaccatgggtcaatattt 359
Query: 260 gatggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatatg 319
||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 358 gatggcgtatggagtcctccagcttcaaaacctctattactaacaagttctgcccatatg 299
Query: 320 ccaccagcccctgcatggttgatctcctcaaagaagatcccgaacagtgtatcagggatc 379
||||| || ||||||||||||||||||||||| || ||||| |||||||| || || |||
Sbjct: 298 ccaccggctcctgcatggttgatctcctcaaaaaacatcccaaacagtgtgtctggtatc 239
Query: 380 ttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
|| || |||||||| | ||||| || ||| |||||| ||||||||
Sbjct: 238 tttcgggcaagctgtgatgaggcatcaaccttgagggtggccgtctg 192
>gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L22
5-PRIME, mRNA sequence
Length = 390
Score = 180 bits (91), Expect = 4e-044
Identities = 172/199 (86%)
Strand = Plus / Minus
Query: 228 cgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaa 287
|||| ||||| || |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 390 cgtcgccaattatagaccatgggtcaatatttgatggcgtatggagtcctccagcttcaa 331
Query: 288 accctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 330 aacctctattactaacaagttctgcccatatgccaccggctcctgcatggttgatctcct 271
Query: 348 caaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtcca 407
|||| || ||||| |||||||| || || ||||| || |||||||| | ||||| || |
Sbjct: 270 caaaaaacatcccaaacagtgtgtctggtatctttcgggcaagctgtgatgaggcatcaa 211
Query: 408 ccgcgagggtcgccgtctg 426
|| |||||| ||||||||
Sbjct: 210 ccttgagggtggccgtctg 192
>gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J08 5', mRNA sequence
Length = 659
Score = 143 bits (72), Expect = 8e-033
Identities = 226/276 (81%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccacc-agtagg 138
||||||||||||||||||||||| || ||||||||||||| ||||||||| || || ||
Sbjct: 527 ccttcttctatgttcatgccccagaatcctgggttgtaaataccaacaccgcccagctgg 468
Query: 139 acaattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgt 198
||| || | ||||| | |||||||| ||||||||||| |||| ||||||||| |||||
Sbjct: 467 acacttggcacaaagaatttccatccttagagcaacgatatttctactgaaacaagatgt 408
Query: 199 acgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgtt 258
| || |||| ||| ||| ||||| ||||| |||||||| |||||||| || |||||
Sbjct: 407 tctttcagtcttcacgtatatggaggattcgtcaccaatgatagaccatggatctatgtt 348
Query: 259 tgatggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatat 318
||| ||||| || | ||||| | |||||| ||| ||||||| ||||| || |||||||
Sbjct: 347 tgaaggagtgtgaggccctccggtttcaaaacctttgttactgacaagctccgcccataa 288
Query: 319 gccaccagcccctgcatggttgatctcctcaaagaa 354
|||||||| || || |||||||| |||||||||||
Sbjct: 287 tccaccagctccagcgtggttgatttcctcaaagaa 252
>gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P04
5-PRIME, mRNA sequence
Length = 379
Score = 137 bits (69), Expect = 5e-031
Identities = 189/228 (82%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| |||
Sbjct: 233 ccttcttctatgttcatgccccagaatcctgggttgtaaataccaacaccgccagctgga 174
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| || | ||||| | |||||||| ||||||||||| |||| ||||||||| |||||
Sbjct: 173 cacttggcacaaagaatttccatccttagagcaacgatatttctactgaaacaagatgtt 114
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
| || |||| ||| ||| ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 113 ctttcagtcttcacgtatatggaggattcgtcaccaatgatagaccatggatctatgttt 54
Query: 260 gatggagtatggagg-cctccagcttcaaaccctctgttactaacaag 306
|| ||||| || ||| ||||| |||||||| ||| ||||||| |||||
Sbjct: 53 gaaggagtgtgnaggccctccggcttcaaaacctttgttactgacaag 6
>gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005C01f, mRNA sequence
Length = 789
Score = 133 bits (67), Expect = 8e-030
Identities = 169/203 (83%)
Strand = Plus / Minus
Query: 224 gagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagct 283
|||||||| |||| || ||||||||||| || || |||| | |||||| |||||||||
Sbjct: 403 gagtcgtcgccaactatagaccatgggtccatattccatggtgcatggagtcctccagct 344
Query: 284 tcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatc 343
||||||||||| | ||| |||||||| |||||||||||||| || | |||||||||||||
Sbjct: 343 tcaaaccctctatcactcacaagttctgcccatatgccaccggctcatgcatggttgatc 284
Query: 344 tcctcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcg 403
|||||||| || ||||| |||||||| || || ||||| || |||||||| | |||||
Sbjct: 283 tcctcaaaaaacatcccaaacagtgtgtctggtatctttcgggcaagctgtgatgaggca 224
Query: 404 tccaccgcgagggtcgccgtctg 426
|| ||| |||||| ||||||||
Sbjct: 223 tcaaccttgagggtggccgtctg 201
>gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65D06
5-PRIME, mRNA sequence
Length = 642
Score = 133 bits (67), Expect = 8e-030
Identities = 187/227 (82%)
Strand = Plus / Minus
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| |||
Sbjct: 232 ccttcttctatgttcatgccccagaatcctgggttgtaaataccaacaccgccagctgga 173
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| || | ||||| | |||||||| ||||||||||| |||| ||||||||| |||||
Sbjct: 172 cacttggcacaaagaatttccatccttagagcaacgatatttctactgaaacaagatgtt 113
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
| || |||| ||| ||| ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 112 ctttcagtcttcacgtatatggaggattcgtcaccaatgatagaccatggatctatgttt 53
Query: 260 gatggagtatggaggcctccagcttcaaaccctctgttactaacaag 306
|| ||||| || | ||||| |||||||| ||| ||||||| |||||
Sbjct: 52 gaaggagtgtgaggccctccggcttcaaaacctttgttactgacaag 6
>gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P16
3-PRIME, mRNA sequence
Length = 601
Score = 131 bits (66), Expect = 3e-029
Identities = 96/106 (90%)
Strand = Plus / Minus
Query: 296 ttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaag 355
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 598 ttactaacaagttctgcccatattccaccagctcctgcatggttgatctcctcaaagaat 539
Query: 356 atcccgaacagtgtatcagggatcttccgagcaagctgcggcgagg 401
|| || ||||| |||||||||||||| |||||||| ||||| ||||
Sbjct: 538 attccaaacagcgtatcagggatctttcgagcaaggtgcggtgagg 493
>gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004B07f, mRNA sequence
Length = 605
Score = 129 bits (65), Expect = 1e-028
Identities = 186/225 (82%), Gaps = 1/225 (0%)
Strand = Plus / Minus
Query: 8 gagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaaga 67
||||||| || |||||||||||| || | | ||||| ||| |||||| ||||||| |||
Sbjct: 225 gagcttgctaatgaaactgtcaattctgcagcttctgctgatttaacatacataactaga 166
Query: 68 ttgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaaca 127
|||||| |||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 165 ttgtaggtctttccatcttctatgttcatgccccagaacccagggttgtaaatgccaaca 106
Query: 128 ccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgt-ttcgact 186
|||| | || || | ||| || || ||||||||| | ||||| | |||| |||||||
Sbjct: 105 ccactggctgggcagtcatcacagagaacctccatcttaagagcgataatgtcttcgact 46
Query: 187 gaaacatgatgtacgatcggtctccacaaatacagaggagtcgtc 231
|||||||||||||||||| ||| ||||||||| || ||||||||
Sbjct: 45 gaaacatgatgtacgatcagtcgccacaaatatggaagagtcgtc 1
>gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16J20
5-PRIME, mRNA sequence
Length = 372
Score = 121 bits (61), Expect = 3e-026
Identities = 219/273 (80%)
Strand = Plus / Minus
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| |||
Sbjct: 366 ccttcttctatgttcatgccccagaatcctgggttgtaaataccaacaccgccagctgga 307
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| || | ||||| | |||||||| ||||||||||| |||| |||| | |||||
Sbjct: 306 cacttggcacaaagaatttccatccttagagcaacgatatttctactgcnncnagatgtt 247
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
| || |||| ||| ||| ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 246 ctttcagtcttcacgtatatggaggattcgtcaccaatgatagaccatggatctatgttt 187
Query: 260 gatggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatatg 319
|| ||||| | | ||||| |||||||| ||| ||||||| ||||| || |||||||
Sbjct: 186 gaaggagtgtcaggccctccggcttcaaaacctttgttactgacaagctccgcccataat 127
Query: 320 ccaccagcccctgcatggttgatctcctcaaag 352
|||||||| || || |||||||| ||||| |||
Sbjct: 126 ccaccagctccagcgtggttgatttcctcnaag 94
>gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_B24 5', mRNA sequence
Length = 223
Score = 117 bits (59), Expect = 5e-025
Identities = 155/187 (82%)
Strand = Plus / Minus
Query: 80 ccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtagga 139
||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| |||
Sbjct: 187 ccttcttctatgttcatgccccagaatcctgggttgtaaataccaacaccgccagctgga 128
Query: 140 caattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgta 199
|| || | ||||| | |||||||| ||||||||||| |||| ||||||||| |||||
Sbjct: 127 cacttggcacaaagaatttccatccttagagcaacgatatttctactgaaacaagatgtt 68
Query: 200 cgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgttt 259
| || |||| ||| ||| ||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 67 ctttcagtcttcacgtatatggaggattcgtcaccaatgatagaccatggatctatgttt 8
Query: 260 gatggag 266
|| ||||
Sbjct: 7 gaaggag 1
>gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I02
5-PRIME, mRNA sequence
Length = 463
Score = 111 bits (56), Expect = 3e-023
Identities = 161/196 (82%)
Strand = Plus / Minus
Query: 159 ccatcctgagagcaacgatgtttcgactgaaacatgatgtacgatcggtctccacaaata 218
||||||| ||||||||||| |||| ||||||||| ||||| | || |||| ||| |||
Sbjct: 463 ccatccttagagcaacgatatttctactgaaacaagatgttctttcagtcttcacgtata 404
Query: 219 cagaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctc 278
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | ||||
Sbjct: 403 tggaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctc 344
Query: 279 cagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggt 338
| |||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||
Sbjct: 343 cggcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggt 284
Query: 339 tgatctcctcaaagaa 354
|||| |||||||||||
Sbjct: 283 tgatttcctcaaagaa 268
>gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G12f, mRNA sequence
Length = 489
Score = 105 bits (53), Expect = 2e-021
Identities = 161/197 (81%)
Strand = Plus / Minus
Query: 158 tccatcctgagagcaacgatgtttcgactgaaacatgatgtacgatcggtctccacaaat 217
|||||| | ||||||||||| |||| ||||||||| ||||| | || |||| ||| ||
Sbjct: 454 tccatcgttagagcaacgatatttctactgaaacaagatgttctttcagtcttcacgtat 395
Query: 218 acagaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcct 277
| ||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||
Sbjct: 394 atggaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccct 335
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|| |||||||| ||| ||||||| ||||| || ||||||| |||||||| || || |||
Sbjct: 334 ccggcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtgg 275
Query: 338 ttgatctcctcaaagaa 354
||||| |||||||||||
Sbjct: 274 ttgatttcctcaaagaa 258
>gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G12f, mRNA sequence
Length = 417
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||||
Sbjct: 391 gaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctccg 332
Query: 281 gcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttg 340
|||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||||
Sbjct: 331 gcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggttg 272
Query: 341 atctcctcaaagaa 354
|| |||||||||||
Sbjct: 271 atttcctcaaagaa 258
>gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J20
5-PRIME, mRNA sequence
Length = 416
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||||
Sbjct: 392 gaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctccg 333
Query: 281 gcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttg 340
|||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||||
Sbjct: 332 gcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggttg 273
Query: 341 atctcctcaaagaa 354
|| |||||||||||
Sbjct: 272 atttcctcaaagaa 259
>gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H21
5-PRIME, mRNA sequence
Length = 428
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||||
Sbjct: 411 gaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctccg 352
Query: 281 gcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttg 340
|||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||||
Sbjct: 351 gcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggttg 292
Query: 341 atctcctcaaagaa 354
|| |||||||||||
Sbjct: 291 atttcctcaaagaa 278
>gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50J14
5-PRIME, mRNA sequence
Length = 417
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||||
Sbjct: 388 gaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctccg 329
Query: 281 gcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttg 340
|||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||||
Sbjct: 328 gcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggttg 269
Query: 341 atctcctcaaagaa 354
|| |||||||||||
Sbjct: 268 atttcctcaaagaa 255
>gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O15
5-PRIME, mRNA sequence
Length = 438
Score = 91.7 bits (46), Expect = 3e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||| ||||| |||||||| |||||||| || |||||||| ||||| || | |||||
Sbjct: 408 gaggattcgtcaccaatgatagaccatggatctatgtttgaaggagtgtgaggccctccg 349
Query: 281 gcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttg 340
|||||||| ||| ||||||| ||||| || ||||||| |||||||| || || ||||||
Sbjct: 348 gcttcaaaacctttgttactgacaagctccgcccataatccaccagctccagcgtggttg 289
Query: 341 atctcctcaaagaa 354
|| |||||||||||
Sbjct: 288 atttcctcaaagaa 275
>gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 5', mRNA sequence
Length = 270
Score = 67.9 bits (34), Expect = 4e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 329 cctgcatggttgatctcctcaaagaagatcccgaacagtgtatcagggatcttccgagca 388
||||||||||||||||||||||| || ||||| |||||||| || || ||||| || |||
Sbjct: 265 cctgcatggttgatctcctcaaaaaacatcccaaacagtgtgtctggtatctttcgggca 206
Query: 389 agctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
||||| | ||||| || ||| |||||| ||||||||
Sbjct: 205 agctgtgatgaggcatcaaccttgagggtggccgtctg 168
>gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 907
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110H09_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 917
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H05_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 911
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109E06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 916
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H02_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 927
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C11_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108A03_SK.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaattc 643
|||||||||||||||||||||
Sbjct: 33 ggtcgacgcggccgcgaattc 13
>gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC106B05_T3.ab1 similar to (AC007369) Sugar transporter
[Arabidopsis thaliana], mRNA sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.087
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 32 gtcgacgcggccgcgaattc 13
>gb|BM816529.1|BM816529 HC111H03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H03_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Cystathionine beta-lyase,cystathionine
beta-synthase,Nitric-oxide synthase,Cysteine
lyase,Cysteine synthase,Cystathionine beta-synthase,,
mRNA sequence
Length = 928
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 623 ggtcgacgcggccgcgaat 641
|||||||||||||||||||
Sbjct: 36 ggtcgacgcggccgcgaat 18
>gb|BQ467692.1|BQ467692 HS04J06r HS Hordeum vulgare subsp. vulgare cDNA clone HS04J06
5-PRIME, mRNA sequence
Length = 354
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 495 cggcacgaggggccgcgtc 513
|||||||||||||||||||
Sbjct: 1 cggcacgaggggccgcgtc 19
>emb|AM087611.1| Hordeum vulgare partial probable ltp pseudogene
Length = 1290
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 394 cggcgaggcgtccaccgcg 412
|||||||||||||||||||
Sbjct: 226 cggcgaggcgtccaccgcg 244
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,992
Number of Sequences: 312970
Number of extensions: 99992
Number of successful extensions: 28726
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28669
Number of HSP's gapped (non-prelim): 47
length of query: 645
length of database: 175,134,539
effective HSP length: 19
effective length of query: 626
effective length of database: 169,188,109
effective search space: 105911756234
effective search space used: 105911756234
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)