BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336914.2.1
(1448 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. v... 174 5e-042
gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA,... 174 5e-042
gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hyd... 174 5e-042
gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. v... 165 5e-039
gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. v... 165 5e-039
gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke devel... 161 8e-038
gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke devel... 161 8e-038
gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA li... 161 8e-038
gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA li... 161 8e-038
gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. v... 161 8e-038
gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. v... 161 8e-038
gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. v... 161 8e-038
gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA,... 161 8e-038
gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hyd... 161 8e-038
gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 ... 159 3e-037
gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachi... 159 3e-037
gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subs... 155 5e-036
gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachi... 147 1e-033
gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. v... 147 1e-033
gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots... 141 7e-032
gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-a... 137 1e-030
gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day ger... 137 1e-030
gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm librar... 137 1e-030
gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. v... 133 2e-029
gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachi... 127 1e-027
gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa... 123 2e-026
gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachi... 101 6e-020
gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-a... 101 6e-020
gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedl... 98 1e-018
gb|BU983569.1|BU983569 HA30C20r HA Hordeum vulgare subsp. v... 98 1e-018
gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. v... 98 1e-018
gb|BE602449.2|BE602449 HVSMEh0098P05f Hordeum vulgare 5-45 ... 90 2e-016
gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, n... 90 2e-016
gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. v... 90 2e-016
gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm libra... 90 2e-016
gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. v... 84 1e-014
gb|BM096809.2|BM096809 EBma07_SQ001_L15_R maternal, 21 DPA,... 64 1e-008
gb|BE602426.2|BE602426 HVSMEh0098N17f Hordeum vulgare 5-45 ... 60 2e-007
gb|BM096868.2|BM096868 EBma07_SQ001_P07_R maternal, 21 DPA,... 58 8e-007
gb|BQ763515.1|BQ763515 EBro02_SQ008_J13_R root, 3 week, hyd... 56 3e-006
gb|BQ765646.1|BQ765646 EBro03_SQ007_C23_R root, 3 week, wat... 56 3e-006
gb|BQ768452.1|BQ768452 EBro08_SQ011_C19_R root, 3 week, dro... 56 3e-006
gb|BI949982.1|BI949982 HVSMEl0017H22f Hordeum vulgare spike... 50 2e-004
gb|BQ471570.1|BQ471570 HV02N06r HV Hordeum vulgare subsp. v... 50 2e-004
gb|BQ664314.1|BQ664314 HV02N06u HV Hordeum vulgare subsp. v... 50 2e-004
gb|BI779199.2|BI779199 EBro01_SQ003_E21_R root, 3 week, hyd... 48 8e-004
gb|BU982849.1|BU982849 HA27M16r HA Hordeum vulgare subsp. v... 48 8e-004
gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedl... 46 0.003
gb|BF257507.2|BF257507 HVSMEf0013B16f Hordeum vulgare seedl... 44 0.013
gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, dro... 44 0.013
gb|BI949584.1|BI949584 HVSMEl0014M08f Hordeum vulgare spike... 40 0.20
gb|AV913511.1|AV913511 AV913511 K. Sato unpublished cDNA li... 40 0.20
gb|AV918810.1|AV918810 AV918810 K. Sato unpublished cDNA li... 40 0.20
gb|BQ458845.1|BQ458845 HA04A22r HA Hordeum vulgare subsp. v... 40 0.20
gb|BQ656559.1|BQ656559 HA04A22u HA Hordeum vulgare subsp. v... 40 0.20
gb|BQ658042.1|BQ658042 HA05P08u HA Hordeum vulgare subsp. v... 40 0.20
gb|BM374151.2|BM374151 EBma03_SQ003_M16_R maternal, 8 DPA, ... 40 0.20
gb|BI777292.2|BI777292 EBro03_SQ002_L24_R root, 3 week, wat... 40 0.20
gb|BQ755094.1|BQ755094 EBed02_SQ003_L09_R endosperm, 8 DPA,... 40 0.20
gb|BU973931.1|BU973931 HB26F19r BC Hordeum vulgare subsp. v... 40 0.20
gb|CA020892.1|CA020892 HZ38D16r HZ Hordeum vulgare subsp. v... 40 0.20
gb|CV059793.1|CV059793 BNEL51a5 Barley EST endosperm librar... 40 0.20
gb|CV060222.1|CV060222 BNEL55g2 Barley EST endosperm librar... 40 0.20
gb|CV060661.1|CV060661 BNEL5G10 Barley EST endosperm librar... 40 0.20
gb|CV061077.1|CV061077 BNEL64f9 Barley EST endosperm librar... 40 0.20
gb|CV063131.1|CV063131 BNEL87a10 Barley EST endosperm libra... 40 0.20
gb|CV063214.1|CV063214 BNEL87h11 Barley EST endosperm libra... 40 0.20
gb|CV063307.1|CV063307 BNEL88h3 Barley EST endosperm librar... 40 0.20
>gb|BQ471435.1|BQ471435 HV02G18r HV Hordeum vulgare subsp. vulgare cDNA clone HV02G18
5-PRIME, mRNA sequence
Length = 572
Score = 174 bits (88), Expect = 5e-042
Identities = 219/263 (83%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 549 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 490
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 489 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 430
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 429 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 370
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 369 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 310
Query: 409 gtgtaggtgccctgggcgcggcc 431
|||||||| ||||| ||||||||
Sbjct: 309 gtgtaggtcccctgcgcgcggcc 287
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 250 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 191
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 190 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 138
>gb|BM371288.2|BM371288 EBma08_SQ002_C11_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_C11 5', mRNA sequence
Length = 601
Score = 174 bits (88), Expect = 5e-042
Identities = 219/263 (83%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 601 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 542
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 541 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 482
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 481 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 422
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 421 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 362
Query: 409 gtgtaggtgccctgggcgcggcc 431
|||||||| ||||| ||||||||
Sbjct: 361 gtgtaggtcccctgcgcgcggcc 339
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 302 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 243
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 242 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 190
>gb|BQ763387.1|BQ763387 EBro02_SQ008_O04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_O04 5', mRNA sequence
Length = 543
Score = 174 bits (88), Expect = 5e-042
Identities = 219/263 (83%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 543 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 484
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 483 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 424
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 423 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 364
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 363 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 304
Query: 409 gtgtaggtgccctgggcgcggcc 431
|||||||| ||||| ||||||||
Sbjct: 303 gtgtaggtcccctgcgcgcggcc 281
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 244 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 185
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 184 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 132
>gb|BU979623.1|BU979623 HA16L23r HA Hordeum vulgare subsp. vulgare cDNA clone HA16L23
5-PRIME, mRNA sequence
Length = 540
Score = 165 bits (83), Expect = 5e-039
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 186 gacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctggacgtacccgcg 245
|||||||||||||||||| ||| ||||||||| |||||| |||||| |||||| |||||
Sbjct: 536 gacgacggtctcgccggacttggcgccggagtccatggtgcgcgcctcgacgtagccgcg 477
Query: 246 cgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacgtcgctgagcac 305
||||||||||||||| ||| |||| ||||||||||||||||| | || | |||||
Sbjct: 476 cgccatgcggaacttgccggtgcccccgacgatgctcatctccctcaccgccgacagcac 417
Query: 306 ctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaacacgaa 365
|||| |||||||| ||||| ||| ||||||||||| |||||||| ||||| |||||
Sbjct: 416 ctcgttgcggccgtagatggtgaggccgctgcccttgtagtccccggcggtgaagacgaa 357
Query: 366 gtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggc 425
|| ||| ||||||||||||||| || ||||||||| ||||||||||| ||||| ||
Sbjct: 356 gttcatgttcatgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccctgcgc 297
Query: 426 gcggcc 431
||||||
Sbjct: 296 gcggcc 291
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 254 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 195
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 194 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 142
>gb|BU981234.1|BU981234 HA23A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA23A06
5-PRIME, mRNA sequence
Length = 537
Score = 165 bits (83), Expect = 5e-039
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 186 gacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctggacgtacccgcg 245
|||||||||||||||||| ||| ||||||||| |||||| |||||| |||||| |||||
Sbjct: 536 gacgacggtctcgccggacttggcgccggagtccatggtgcgcgcctcgacgtagccgcg 477
Query: 246 cgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacgtcgctgagcac 305
||||||||||||||| ||| |||| ||||||||||||||||| | || | |||||
Sbjct: 476 cgccatgcggaacttgccggtgcccccgacgatgctcatctccctcaccgccgacagcac 417
Query: 306 ctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaacacgaa 365
|||| |||||||| ||||| ||| ||||||||||| |||||||| ||||| |||||
Sbjct: 416 ctcgttgcggccgtagatggtgaggccgctgcccttgtagtccccggcggtgaagacgaa 357
Query: 366 gtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggc 425
|| ||| ||||||||||||||| || ||||||||| ||||||||||| ||||| ||
Sbjct: 356 gttcatgttcatgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccctgcgc 297
Query: 426 gcggcc 431
||||||
Sbjct: 296 gcggcc 291
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 254 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 195
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 194 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 142
>gb|AL507467.1|AL507467 AL507467 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10V 5',
mRNA sequence
Length = 668
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 577 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 518
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 517 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 458
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 457 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 398
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 397 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 338
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 337 gtcccctgcgcgcggcccacctcg 314
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 271 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 212
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 211 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 152
Query: 589 ttgaa 593
|||||
Sbjct: 151 ttgaa 147
>gb|AL510732.1|AL510732 AL510732 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05N10u 3',
mRNA sequence
Length = 579
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Plus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 176 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 235
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 236 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 295
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 296 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 355
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 356 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 415
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 416 gtcccctgcgcgcggcccacctcg 439
>gb|AV916732.1|AV916732 AV916732 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 5', mRNA sequence
Length = 566
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 392 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 333
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 332 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 273
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 272 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 213
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 212 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 153
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 152 gtcccctgcgcgcggcccacctcg 129
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttgg 520
||||||||||| |||||||||| |||||||||| |||||| ||| ||||||
Sbjct: 86 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttgg 35
>gb|AV922026.1|AV922026 AV922026 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h04 3', mRNA sequence
Length = 519
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Plus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 138 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 197
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 198 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 257
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 258 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 317
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 318 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 377
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 378 gtcccctgcgcgcggcccacctcg 401
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttgg 520
||||||||||| |||||||||| |||||||||| |||||| ||| ||||||
Sbjct: 444 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttgg 495
>gb|BQ471411.1|BQ471411 HV02F17r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F17
5-PRIME, mRNA sequence
Length = 572
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 561 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 502
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 501 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 442
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 441 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 382
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 381 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 322
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 321 gtcccctgcgcgcggcccacctcg 298
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 255 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 196
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 195 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 136
Query: 589 ttgaa 593
|||||
Sbjct: 135 ttgaa 131
>gb|BQ471542.1|BQ471542 HV02L22r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
5-PRIME, mRNA sequence
Length = 565
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 552 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 493
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 492 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 433
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 432 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 373
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 372 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 313
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 312 gtcccctgcgcgcggcccacctcg 289
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 246 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 187
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 186 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 127
Query: 589 ttgaa 593
|||||
Sbjct: 126 ttgaa 122
>gb|BQ664296.1|BQ664296 HV02L22u HV Hordeum vulgare subsp. vulgare cDNA clone HV02L22
3-PRIME, mRNA sequence
Length = 510
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Plus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 133 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 192
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 193 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 252
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 253 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 312
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 313 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 372
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 373 gtcccctgcgcgcggcccacctcg 396
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttgg 520
||||||||||| |||||||||| |||||||||| |||||| ||| ||||||
Sbjct: 439 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttgg 490
>gb|BM373485.2|BM373485 EBma04_SQ004_J22_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_J22 5', mRNA sequence
Length = 634
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 547 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 488
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 487 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 428
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 427 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 368
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 367 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 308
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 307 gtcccctgcgcgcggcccacctcg 284
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 241 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 182
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 181 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 122
Query: 589 ttgaa 593
|||||
Sbjct: 121 ttgaa 117
>gb|BQ763415.1|BQ763415 EBro02_SQ008_F07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_F07 5', mRNA sequence
Length = 660
Score = 161 bits (81), Expect = 8e-038
Identities = 218/264 (82%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 549 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 490
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 489 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 430
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 429 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 370
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 369 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 310
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 309 gtcccctgcgcgcggcccacctcg 286
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 243 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 184
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 183 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 124
Query: 589 ttgaa 593
|||||
Sbjct: 123 ttgaa 119
>gb|BE193614.2|BE193614 HVSMEh0081O22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081O22f, mRNA sequence
Length = 756
Score = 159 bits (80), Expect = 3e-037
Identities = 217/263 (82%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| || | |||||||||||||||||| ||| || |||||| |||||| ||
Sbjct: 480 acgtagacggtatattcgacgacggtctcgccggacttggcgcgggagtccatggtgcgc 421
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 420 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 361
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 360 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 301
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 300 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 241
Query: 409 gtgtaggtgccctgggcgcggcc 431
|||||||| ||||| ||||||||
Sbjct: 240 gtgtaggtcccctgcgcgcggcc 218
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 181 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 122
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 121 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 69
>gb|BI957678.1|BI957678 HVSMEn0010J22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010J22f, mRNA sequence
Length = 659
Score = 159 bits (80), Expect = 3e-037
Identities = 217/263 (82%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||| ||||||||||||||||| || |||||| |||||| ||
Sbjct: 554 acgtagacggtatactcgacgccggtctcgccggatttggcgcgggagtccatggtgcgc 495
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| | |||||||||||||||
Sbjct: 494 gcctcgacgtagccgcgcgccatgcggaacttgccggtgccccagacgatgctcatctcc 435
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 434 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 375
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 374 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 315
Query: 409 gtgtaggtgccctgggcgcggcc 431
|||||||| ||||| ||||||||
Sbjct: 314 gtgtaggtcccctgcgcgcggcc 292
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 255 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 196
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 195 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 143
>gb|AJ433789.1|AJ433789 AJ433789 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050C10F1, mRNA sequence
Length = 408
Score = 155 bits (78), Expect = 5e-036
Identities = 203/245 (82%)
Strand = Plus / Minus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 245 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 186
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcg 288
|||| |||||| |||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 185 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcatctcc 126
Query: 289 cggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctcc 348
| || | ||||||||| |||||||| ||||| ||| ||||||||||| |||
Sbjct: 125 ctcaccgccgacagcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtcc 66
Query: 349 ccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaac 408
||||| ||||| ||||||| ||| ||||||||||||||| || ||||||||| |||
Sbjct: 65 ccggcggtgaagacgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaac 6
Query: 409 gtgta 413
|||||
Sbjct: 5 gtgta 1
>gb|BI960172.1|BI960172 HVSMEn0023I14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I14f, mRNA sequence
Length = 644
Score = 147 bits (74), Expect = 1e-033
Identities = 219/267 (82%), Gaps = 3/267 (1%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 552 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 493
Query: 235 acgtacccgcgcgccatgcggaactttcc---gctgccgccgacgatgctcatctcgcgg 291
||||| ||||| |||||||||||||| || | |||| |||| |||||||||||| |
Sbjct: 492 acgtagccgcgagccatgcggaacttgccnncggtgcccccgaggatgctcatctccctc 433
Query: 292 acgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccg 351
|| | ||||||||| |||||||| ||||| || |||||||||||| |||||||
Sbjct: 432 accgccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccg 373
Query: 352 gccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtg 411
|| ||||||||||||| ||| ||||||||| ||||| || |||||| || ||||||
Sbjct: 372 gcggtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtg 313
Query: 412 taggtgccctgggcgcggcccacctcg 438
||||| ||||| |||||||||||||||
Sbjct: 312 taggtcccctgcgcgcggcccacctcg 286
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 243 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 184
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 183 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 124
Query: 589 ttgaa 593
|||||
Sbjct: 123 ttgaa 119
>gb|BQ459061.1|BQ459061 HA02H05r HA Hordeum vulgare subsp. vulgare cDNA clone HA02H05
5-PRIME, mRNA sequence
Length = 546
Score = 147 bits (74), Expect = 1e-033
Identities = 208/253 (82%)
Strand = Plus / Minus
Query: 186 gacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctggacgtacccgcg 245
|||||||||||||||||| ||| ||||||||| | |||| |||||||||||| |||||
Sbjct: 545 gacgacggtctcgccggagttggcgccggagtccacggtgctcgcctggacgtagccgcg 486
Query: 246 cgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacgtcgctgagcac 305
|||||||||||||| || |||| |||| |||||||||||| | || | |||||
Sbjct: 485 agccatgcggaacttgcccgtgcccccgaggatgctcatctccctcaccgccgaaagcac 426
Query: 306 ctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaacacgaa 365
|||| |||||||| ||||| || |||||||||||| ||||||||| |||||||||||
Sbjct: 425 ctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcggtgaacacgaa 366
Query: 366 gtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggc 425
|| ||| ||||||||| ||||| || |||||| || ||||||||||| ||||| ||
Sbjct: 365 gttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccctgcgc 306
Query: 426 gcggcccacctcg 438
|||||||||||||
Sbjct: 305 gcggcccacctcg 293
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 250 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 191
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 190 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 131
Query: 589 ttgaa 593
|||||
Sbjct: 130 ttgaa 126
>gb|AL502849.1|AL502849 AL502849 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O16u 3', mRNA sequence
Length = 591
Score = 141 bits (71), Expect = 7e-032
Identities = 217/265 (81%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 300 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 359
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 360 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 419
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 420 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 479
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || ||||||||
Sbjct: 480 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtan 539
Query: 415 gtgccctgggc-gcggcccacctcg 438
|| ||||| || |||||||||||||
Sbjct: 540 gtcccctgcgcggcggcccacctcg 564
>gb|BG343533.2|BG343533 HVSMEg0006F02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006F02f, mRNA sequence
Length = 962
Score = 137 bits (69), Expect = 1e-030
Identities = 217/264 (82%), Gaps = 2/264 (0%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||||| |||||||||||||||| ||| |||||||| | |||| |||||||
Sbjct: 544 acggtgtactgg-cgacggtctcgccggagttggc-ccggagtccacggtgctcgcctgg 487
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 486 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 427
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 426 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 367
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 366 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 307
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 306 gtcccctgcgcgcggcccacctcg 283
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 240 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 181
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 180 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 121
Query: 589 ttgaa 593
|||||
Sbjct: 120 ttgaa 116
>gb|BM444860.1|BM444860 EBem09_SQ006_L09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_L09 5', mRNA sequence
Length = 327
Score = 137 bits (69), Expect = 1e-030
Identities = 203/248 (81%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 251 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 192
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 191 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 132
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 131 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 72
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 71 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 12
Query: 415 gtgccctg 422
|| |||||
Sbjct: 11 gtcccctg 4
>gb|CV056595.1|CV056595 BNEL19E4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL19E4 5' similar to unknown
protein, mRNA sequence
Length = 359
Score = 137 bits (69), Expect = 1e-030
Identities = 203/248 (81%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| | |||| |||||||
Sbjct: 251 acggtgtactcgacgacggtctcgccggagttggcgccggagtccacggtgctcgcctgg 192
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
||||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 191 acgtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 132
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||||| ||||| || |||||||||||| |||||||||
Sbjct: 131 gccgaaagcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcg 72
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 71 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 12
Query: 415 gtgccctg 422
|| |||||
Sbjct: 11 gtcccctg 4
>gb|BU982763.1|BU982763 HA27I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA27I15
5-PRIME, mRNA sequence
Length = 587
Score = 133 bits (67), Expect = 2e-029
Identities = 183/222 (82%)
Strand = Plus / Minus
Query: 210 gccggagtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgcc 269
||||||||| |||||| |||||| |||||| |||||||||||||||||||| ||| ||||
Sbjct: 580 gccggagtccatggtgcgcgcctcgacgtagccgcgcgccatgcggaacttgccggtgcc 521
Query: 270 gccgacgatgctcatctcgcggacgtcgctgagcacctcgntgcggccgaggatggagag 329
|||||||||||||| || | || | ||||||||| |||||||| ||||| |||
Sbjct: 520 cccgacgatgctcatatccctcaccgccgacagcacctcgttgcggccgtagatggtgag 461
Query: 330 cgtgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaa 389
||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||||
Sbjct: 460 gccgctgcccttgtagtccccggcggtgaagacgaagttcatgttcatgaggaggccgaa 401
Query: 390 cgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcc 431
|| ||||||||| ||||||||||| ||||| ||||||||
Sbjct: 400 ggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 359
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 322 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 263
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 262 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 210
>gb|BI958849.1|BI958849 HVSMEn0016O03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O03f, mRNA sequence
Length = 668
Score = 127 bits (64), Expect = 1e-027
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 169 acgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgc 228
|||| |||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 145 acgtagacggtatactcgacgacggtctcgccggacttggcgccggagtccatggtgcgc 204
Query: 229 gcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcat 284
|||| |||||| |||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 205 gcctcgacgtagccgcgcgccatgcggaacttgccggtgcccccgacgatgctcat 260
Score = 71.9 bits (36), Expect = 6e-011
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 301 agcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaac 360
||||||||| |||||||| ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 277 agcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtccccggcggtgaag 336
Query: 361 acgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccc 420
|| |||| ||| |||||||||||| || || |||||||||||||||||||| |||
Sbjct: 337 accaagttcatgttcatgaggaggcccaaggtggcctggtccgcaaacgtgtagggcccc 396
Query: 421 tgggcgcggcc 431
|| ||||||||
Sbjct: 397 tgcgcgcggcc 407
>gb|BG417730.2|BG417730 HVSMEk0019E17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019E17f, mRNA sequence
Length = 877
Score = 123 bits (62), Expect = 2e-026
Identities = 213/264 (80%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| ||||||||||| || ||| ||| ||||||||| |||| |||||||
Sbjct: 541 acggtgtactngacgacggtcttgctggagttggcgccggagtccccggtgctcgcctgg 482
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
| ||| ||||| |||||||||||||| || |||| |||| |||||||||||| | ||
Sbjct: 481 aggtagccgcgagccatgcggaacttgcccgtgcccccgaggatgctcatctccctcacc 422
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||||| | ||||| || |||||||||||| |||||||||
Sbjct: 421 gccgaaagcacctcgttgcggcagtagatggtcaggctgctgcccttgtactccccggcg 362
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 361 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 302
Query: 415 gtgccctgggcgcggcccacctcg 438
|| ||||| |||||||||||||||
Sbjct: 301 gtcccctgcgcgcggcccacctcg 278
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 235 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 176
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 175 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 116
Query: 589 ttgaa 593
|||||
Sbjct: 115 ttgaa 111
>gb|BI960628.1|BI960628 HVSMEn0025G23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G23f, mRNA sequence
Length = 645
Score = 101 bits (51), Expect = 6e-020
Identities = 116/138 (84%)
Strand = Plus / Minus
Query: 301 agcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaac 360
||||||||| |||||||| ||||| || |||||||||||| ||||||||| ||||||
Sbjct: 425 agcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcggtgaac 366
Query: 361 acgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccc 420
||||||| ||| ||||||||| ||||| || |||||| || ||||||||||| |||
Sbjct: 365 acgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccc 306
Query: 421 tgggcgcggcccacctcg 438
|| |||||||||||||||
Sbjct: 305 tgcgcgcggcccacctcg 288
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 245 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 186
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 185 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 126
Query: 589 ttgaa 593
|||||
Sbjct: 125 ttgaa 121
>gb|BG343276.2|BG343276 HVSMEg0005E17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E17f, mRNA sequence
Length = 890
Score = 101 bits (51), Expect = 6e-020
Identities = 116/138 (84%)
Strand = Plus / Minus
Query: 301 agcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaac 360
||||||||| |||||||| ||||| || |||||||||||| ||||||||| ||||||
Sbjct: 428 agcacctcgttgcggccgtagatggtcaggctgctgcccttgtactccccggcggtgaac 369
Query: 361 acgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccc 420
||||||| ||| ||||||||| ||||| || |||||| || ||||||||||| |||
Sbjct: 368 acgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccc 309
Query: 421 tgggcgcggcccacctcg 438
|| |||||||||||||||
Sbjct: 308 tgcgcgcggcccacctcg 291
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 248 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 189
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 188 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 129
Query: 589 ttgaa 593
|||||
Sbjct: 128 ttgaa 124
>gb|BF625296.2|BF625296 HVSMEa0008E19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E19f, mRNA sequence
Length = 706
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 229 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 170
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 169 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 110
Query: 589 ttgaa 593
|||||
Sbjct: 109 ttgaa 105
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
|||||||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||| |
Sbjct: 378 tgctgcccttgtactccccggcggtgaacacgaagttcatgttcatgaggagcccgaagg 319
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacctcg 438
| |||||| || ||||||||||| ||||| |||||||||||||||
Sbjct: 318 tggcctggtcggcgaacgtgtaggtcccctgcgcgcggcccacctcg 272
Score = 61.9 bits (31), Expect = 5e-008
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtg-tgcgcctg 233
|||||||||| || ||||||||||||||| ||| ||||||||| | |||| | ||||||
Sbjct: 537 acggtgtactcgatgacggtctcgccggagttggcgccggagtccacggtgcttcgcctg 478
Query: 234 gacgtacccgcgcgccatgcggaactt 260
||||| ||| | ||||||||||||||
Sbjct: 477 cacgtaaccgtgagccatgcggaactt 451
>gb|BU983569.1|BU983569 HA30C20r HA Hordeum vulgare subsp. vulgare cDNA clone HA30C20
5-PRIME, mRNA sequence
Length = 422
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 349 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 290
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 289 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 230
Query: 589 ttgaa 593
|||||
Sbjct: 229 ttgaa 225
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 408 cgtgtaggtgccctgggcgcggcccacctcg 438
||||||||| ||||| |||||||||||||||
Sbjct: 422 cgtgtaggtcccctgcgcgcggcccacctcg 392
>gb|CA029181.1|CA029181 HZ64H06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64H06
5-PRIME, mRNA sequence
Length = 369
Score = 97.6 bits (49), Expect = 1e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 469 agcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccgcc 528
||||||||||| |||||||||| |||||||||| |||||| ||| |||||| | |||
Sbjct: 249 agcgggtcgtctatggccaccaccgcgccgaagaaggtggaggagctgttggtggatgcc 190
Query: 529 ccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacc 588
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| |||||
Sbjct: 189 gcctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacc 130
Query: 589 ttgaa 593
|||||
Sbjct: 129 ttgaa 125
Score = 56.0 bits (28), Expect = 3e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 375 catgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcccac 434
||||||||| ||||| || |||||| || ||||||||||| ||||| |||||||||||
Sbjct: 355 catgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccctgcgcgcggcccac 296
Query: 435 ctcg 438
||||
Sbjct: 295 ctcg 292
>gb|BE602449.2|BE602449 HVSMEh0098P05f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0098P05f, mRNA sequence
Length = 514
Score = 89.7 bits (45), Expect = 2e-016
Identities = 126/154 (81%)
Strand = Plus / Minus
Query: 1092 aggatacactttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatg 1151
|||||| | |||| ||||||||||||| ||| || ||||| ||||||||||| |||||||
Sbjct: 361 aggataaattttaaattgaaaggcttgagaaaaggagttcaagctcctcatcntgagatg 302
Query: 1152 tagtcctcttgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatgg 1211
| |||||||| || || | ||||| || |||||||| |||||||| || || | || |
Sbjct: 301 tggtcctctttatagatataagatggcggagtttgttcagcaccttaatacggtgaatcg 242
Query: 1212 cgtaggaactatgagctggtaggtcgttaaccct 1245
|||||||||||| ||||| || | |||||||||
Sbjct: 241 cgtaggaactattggctggcagcttgttaaccct 208
>gb|BQ760080.1|BQ760080 EBpi07_SQ003_K06_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_K06 5', mRNA sequence
Length = 462
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 253 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 194
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 193 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 141
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 375 catgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcc 431
||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||
Sbjct: 346 catgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 290
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 256 aactttccgctgccgccgacgatgctcatctc 287
||||| ||| |||| |||||||||||||||||
Sbjct: 462 aacttgccggtgcccccgacgatgctcatctc 431
>gb|BU982674.1|BU982674 HA27E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA27E09
5-PRIME, mRNA sequence
Length = 532
Score = 89.7 bits (45), Expect = 2e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || |||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct: 321 ggggccggtggtgagcgggtcgtcgatggccacgaccgcgccgaagaaggtggaggagct 262
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 261 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 209
Score = 87.7 bits (44), Expect = 1e-015
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 301 agcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaac 360
||||||||| |||||||| ||||| ||| ||||||||||| |||||||| |||||
Sbjct: 488 agcacctcgttgcggccgtagatggtgaggccgctgcccttgtagtccccggcggtgaag 429
Query: 361 acgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccc 420
||||||| ||| ||||||||||||||| || ||||||||| ||||||||||| |||
Sbjct: 428 acgaagttcatgttcatgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccc 369
Query: 421 tgggcgcggcc 431
|| ||||||||
Sbjct: 368 tgcgcgcggcc 358
>gb|CV054743.1|CV054743 BNEL112g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112g9 5' similar to hypothetical
protein T10K17.300 - Arabidopsis thaliana, mRNA sequence
Length = 360
Score = 89.7 bits (45), Expect = 2e-016
Identities = 197/248 (79%)
Strand = Plus / Minus
Query: 175 acggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctgg 234
|||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||
Sbjct: 251 acggtgtactcgacgacggtctcgccggagttggcgccggagtccccggtgctcgcctga 192
Query: 235 acgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggacg 294
| ||| ||||| ||||| |||| ||| || |||| |||| |||||||||||| | ||
Sbjct: 191 atgtagccgcgagccatccggaccttgcccgtgcccccgaggatgctcatctccctcacc 132
Query: 295 tcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggcc 354
| ||||||||| |||| ||| ||||| || |||||||||||| |||||||||
Sbjct: 131 gccgaaagcacctcgttgcgtccgtagatggtcaggctgctgcccttgtactccccggcg 72
Query: 355 gtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgtag 414
||||||||||||| ||| ||||||||| ||||| || |||||| || |||||||||
Sbjct: 71 gtgaacacgaagttcatgttcatgaggagcccgaaggtggcctggtcggcgaacgtgtag 12
Query: 415 gtgccctg 422
|| |||||
Sbjct: 11 gtcccctg 4
>gb|CA026158.1|CA026158 HZ55B18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55B18
5-PRIME, mRNA sequence
Length = 333
Score = 83.8 bits (42), Expect = 1e-014
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggt 515
|||||| || || ||||||||||| |||||||| | |||||||||| |||||| ||| |
Sbjct: 226 ggggccggtggtgagcgggtcgtcnatggccacgaccgcgccgaagaaggtggaggagct 167
Query: 516 gttggacgccgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
||||| | |||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 166 gttggtggacgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 114
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 375 catgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcc 431
||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||
Sbjct: 319 catgaggaggccgaaggtggcctggtccgcgaacgtgtaggtcccctgcgcgcggcc 263
>gb|BM096809.2|BM096809 EBma07_SQ001_L15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_L15 5', mRNA sequence
Length = 239
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 530 cctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacct 589
||||||| || ||||| |||||||||||| ||||||| | || |||||||||| ||||||
Sbjct: 205 cctgcgcaatccggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacacct 146
Query: 590 tgaa 593
||||
Sbjct: 145 tgaa 142
>gb|BE602426.2|BE602426 HVSMEh0098N17f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0098N17f, mRNA sequence
Length = 510
Score = 60.0 bits (30), Expect = 2e-007
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 1092 aggatacactttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatg 1151
|||||| | |||| |||||||||||| || || ||||| ||||||||||| | |||||
Sbjct: 358 aggataaattttaaattgaaaggctttagacaaggagttcaagctcctcatcctcagatg 299
Query: 1152 tagtcctcttgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatgg 1211
| |||||||| || || | ||||| || |||||||| |||||||| || || | || |
Sbjct: 298 tggtcctctttatagatataagatgccggagtttgttcagcaccttaatacggtgaatcg 239
Query: 1212 cgtaggaactat 1223
||||||||||||
Sbjct: 238 cgtaggaactat 227
>gb|BM096868.2|BM096868 EBma07_SQ001_P07_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_P07 5', mRNA sequence
Length = 215
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 541 cggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacaccttgaa 593
||||| |||||||||||| ||||||| | || |||||||||| ||||||||||
Sbjct: 207 cggatcgccgtcgggctcttccccgctaggacgtcgtggaagtacaccttgaa 155
>gb|BQ763515.1|BQ763515 EBro02_SQ008_J13_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J13 5', mRNA sequence
Length = 656
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacgaagt 367
|||||||| || |||||||||||||||||||||||||||
Sbjct: 438 agcgtgctcccggtgtgctccccggccgtgaacacgaagt 399
>gb|BQ765646.1|BQ765646 EBro03_SQ007_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C23 5', mRNA sequence
Length = 504
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacgaagt 367
|||||||| || |||||||||||||||||||||||||||
Sbjct: 434 agcgtgctcccggtgtgctccccggccgtgaacacgaagt 395
>gb|BQ768452.1|BQ768452 EBro08_SQ011_C19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_C19 5', mRNA sequence
Length = 468
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacgaagt 367
|||||||| || |||||||||||||||||||||||||||
Sbjct: 121 agcgtgctcccggtgtgctccccggccgtgaacacgaagt 82
>gb|BI949982.1|BI949982 HVSMEl0017H22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017H22f, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacga 364
|||||||| ||| |||||||||||||||||||||||
Sbjct: 416 agcgtgctcccccggtgctccccggccgtgaacacga 380
>gb|BQ471570.1|BQ471570 HV02N06r HV Hordeum vulgare subsp. vulgare cDNA clone HV02N06
5-PRIME, mRNA sequence
Length = 579
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacga 364
|||||||| ||| |||||||||||||||||||||||
Sbjct: 430 agcgtgctcccccggtgctccccggccgtgaacacga 394
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 236 cgtacccgcgcgccatgcggaactttccgctgccgccgacgatg 279
||||||||||| |||| |||||| ||| ||||||||||||||
Sbjct: 522 cgtacccgcgcaccatccggaacgcgccggtgccgccgacgatg 479
>gb|BQ664314.1|BQ664314 HV02N06u HV Hordeum vulgare subsp. vulgare cDNA clone HV02N06
3-PRIME, mRNA sequence
Length = 571
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 328 agcgtgctgcccttgtgctccccggccgtgaacacga 364
|||||||| ||| |||||||||||||||||||||||
Sbjct: 248 agcgtgctcccccggtgctccccggccgtgaacacga 284
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 236 cgtacccgcgcgccatgcggaactttccgctgccgccgacgatg 279
||||||||||| |||| |||||| ||| ||||||||||||||
Sbjct: 156 cgtacccgcgcaccatccggaacgcgccggtgccgccgacgatg 199
>gb|BI779199.2|BI779199 EBro01_SQ003_E21_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_E21 5', mRNA sequence
Length = 190
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 375 catgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcccac 434
||||||||| ||||| || |||||| || ||||||||||| ||||| ||||||||| |
Sbjct: 163 catgaggagcccgaaggtggcctggtcggcgaacgtgtaggtcccctgcgcgcggccccc 104
Query: 435 ctcg 438
||||
Sbjct: 103 ctcg 100
>gb|BU982849.1|BU982849 HA27M16r HA Hordeum vulgare subsp. vulgare cDNA clone HA27M16
5-PRIME, mRNA sequence
Length = 199
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 525 cgccccctgcgcgatgcggatggccgtcgggctcgtccccgcca 568
|||| ||||||| || ||||| || |||||||||||||||||||
Sbjct: 185 cgccgcctgcgcaatccggatcgcggtcgggctcgtccccgcca 142
>gb|BG300692.2|BG300692 HVSMEb0018A09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018A09f, mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.003
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 266 tgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgntgcggccgaggatgg 325
|||||||||||| | |||||||||||||||| ||||| | |||||||||| | ||
Sbjct: 406 tgccgccgacgacgggcatctcgcggacgtcggtgagcgggcagttgcggccgagcacgg 347
Query: 326 agagcgtgctgcccttgt 343
|||||||||||| ||||
Sbjct: 346 cgagcgtgctgccgttgt 329
>gb|BF257507.2|BF257507 HVSMEf0013B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013B16f, mRNA sequence
Length = 805
Score = 44.1 bits (22), Expect = 0.013
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 530 cctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaagaacacct 589
||||||| || ||||| |||||||||||| |||||| | | |||||||||| ||||||
Sbjct: 187 cctgcgcaatccggatcgccgtcgggctcttccccgttagtacgtcgtggaagcacacct 128
Query: 590 tg 591
||
Sbjct: 127 tg 126
>gb|BQ767097.1|BQ767097 EBro08_SQ007_P20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P20 5', mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 237 gtacccgcgcgccatgcggaactttccgctgccgccgacgat 278
||||||||||||||| |||||| ||| |||||||||||||
Sbjct: 340 gtacccgcgcgccatccggaacgcgccggtgccgccgacgat 299
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,058
Number of Sequences: 312970
Number of extensions: 165058
Number of successful extensions: 45369
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45213
Number of HSP's gapped (non-prelim): 152
length of query: 1448
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1429
effective length of database: 169,188,109
effective search space: 241769807761
effective search space used: 241769807761
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)