BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3276201.2.1
         (1827 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA015721.1|CA015721  HV12G22u HV Hordeum vulgare subsp. v...   117   1e-024
gb|CB882318.1|CB882318  HL01I11w HL Hordeum vulgare subsp. v...   117   1e-024
gb|AF539980.1|  Hordeum vulgare subsp. vulgare anther endoxy...   113   2e-023
gb|BQ471249.1|BQ471249  HV01N07T HV Hordeum vulgare subsp. v...    78   1e-012
gb|CA017926.1|CA017926  HV06N12r HV Hordeum vulgare subsp. v...    78   1e-012
gb|CA019576.1|CA019576  HV12G22r HV Hordeum vulgare subsp. v...    78   1e-012
gb|AJ461525.1|AJ461525  AJ461525 S00002 Hordeum vulgare subs...    70   3e-010
gb|BQ664105.1|BQ664105  HV01N07w HV Hordeum vulgare subsp. v...    60   3e-007
gb|CA016670.1|CA016670  HV06N12u HV Hordeum vulgare subsp. v...    60   3e-007
gb|AJ463273.1|AJ463273  AJ463273 S00002 Hordeum vulgare subs...    44   0.016
gb|AL506237.1|AL506237  AL506237 Hordeum vulgare Barke devel...    42   0.064
gb|AW982205.2|AW982205  HVSMEg0002E10f Hordeum vulgare pre-a...    42   0.064
gb|BI950704.1|BI950704  HVSMEl0022M04f Hordeum vulgare spike...    42   0.064
gb|BJ463425.1|BJ463425  BJ463425 K. Sato unpublished cDNA li...    42   0.064
gb|BQ460388.1|BQ460388  HA09M17r HA Hordeum vulgare subsp. v...    42   0.064
gb|BQ464047.1|BQ464047  HF01D07T HF Hordeum vulgare subsp. v...    42   0.064
gb|BQ471999.1|BQ471999  HV04C01r HV Hordeum vulgare subsp. v...    42   0.064
gb|BM376791.2|BM376791  EBem05_SQ003_E02_R embryo, 14 DPA, n...    42   0.064
gb|BM376958.2|BM376958  EBem05_SQ003_L10_R embryo, 14 DPA, n...    42   0.064
gb|BM373658.2|BM373658  EBma03_SQ002_E03_R maternal, 8 DPA, ...    42   0.064
gb|BM373914.2|BM373914  EBma03_SQ003_B17_R maternal, 8 DPA, ...    42   0.064
gb|BQ764615.1|BQ764615  EBca01_SQ004_K11_R carpel, pre-anthe...    42   0.064
gb|BU970112.1|BU970112  HB13K08r BC Hordeum vulgare subsp. v...    42   0.064
gb|BU988248.1|BU988248  HF17B16r HF Hordeum vulgare subsp. v...    42   0.064
gb|BU988629.1|BU988629  HF18D11r HF Hordeum vulgare subsp. v...    42   0.064
gb|BU997945.1|BU997945  HI09I01r HI Hordeum vulgare subsp. v...    42   0.064
>gb|CA015721.1|CA015721 HV12G22u HV Hordeum vulgare subsp. vulgare cDNA clone HV12G22
            3-PRIME, mRNA sequence
          Length = 542

 Score =  117 bits (59), Expect = 1e-024
 Identities = 83/91 (91%)
 Strand = Plus / Minus

                                                                        
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
            |||||||||||||||||||||||| ||| ||| |||||| ||||||||||| ||||||  
Sbjct: 470  gggctgctacgtcatgtgcctcaccgacgacaacttcaacaacctccccgtcggcgacac 411

                                           
Query: 1303 cgtcgacaagctcatcgccgagtggaagacg 1333
             ||||||||||||||||||||||||||||||
Sbjct: 410  ggtcgacaagctcatcgccgagtggaagacg 380
>gb|CB882318.1|CB882318 HL01I11w HL Hordeum vulgare subsp. vulgare cDNA clone HL01I11
            3-PRIME, mRNA sequence
          Length = 650

 Score =  117 bits (59), Expect = 1e-024
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1243 gggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacct 1302
            |||||||||||||||||||||||| ||| ||| |||||| ||||||||||| ||||||  
Sbjct: 496  gggctgctacgtcatgtgcctcaccgacgacaacttcaacaacctccccgtcggcgacac 555

                                           
Query: 1303 cgtcgacaagctcatcgccgagtggaagacg 1333
             ||||||||||||||||||||||||||||||
Sbjct: 556  ggtcgacaagctcatcgccgagtggaagacg 586

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
           |||||||||||||| |||   |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 20  tacgccggcaaggtgatcgcgtgggacgtggtgaacgagaacctgcacttcgactacttc 79

              
Query: 836 gag 838
           |||
Sbjct: 80  gag 82

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 913 catgaacgaattcaacacgctggagcagcccg 944
           ||||||||| ||||||||||||||||||||||
Sbjct: 157 catgaacgacttcaacacgctggagcagcccg 188

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1164 acctggagcaggtgctcaggga 1185
            ||||||||||||||||||||||
Sbjct: 417  acctggagcaggtgctcaggga 438
>gb|AF539980.1| Hordeum vulgare subsp. vulgare anther endoxylanase mRNA, partial cds
          Length = 1169

 Score =  113 bits (57), Expect = 2e-023
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1253 gtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaag 1312
            |||||||||||||||||||||||||||| ||| ||||||   ||| || |||||||||||
Sbjct: 706  gtcatgtgcctcacggacaacagcttcacgaatctccccaccggcaacgtcgtcgacaag 765

                                                     
Query: 1313 ctcatcgccgagtggaagacgcaccgcgcgtccgccaccac 1353
            ||||||| ||||||||||||||||| || | ||||||||||
Sbjct: 766  ctcatcgacgagtggaagacgcaccccgtggccgccaccac 806

 Score =  111 bits (56), Expect = 8e-023
 Identities = 140/168 (83%)
 Strand = Plus / Plus

                                                                        
Query: 967  caagtacgtggccaagatgaaccagatccgcggctacgccggcaacggtggcctcaagct 1026
            ||||||||  ||||||||| | ||||| |||  |||| |||||||||  ||| |||||||
Sbjct: 414  caagtacgccgccaagatggagcagatacgctcctaccccggcaacgacggcatcaagct 473

                                                                        
Query: 1027 cggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgaggagctcgct 1086
            || ||||||||||||||||||||||   || ||||||||||| |||||||||    ||||
Sbjct: 474  cgccgtcggcctcgagagccacttcgagacgcccaacatcccatacatgagggcgacgct 533

                                                            
Query: 1087 ggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtgga 1134
            ||||| ||||||  |||| ||| | ||||| |||||||||||||||||
Sbjct: 534  ggacatgctcgcgcagctcaaggtccccatctggctcaccgaggtgga 581

 Score = 87.7 bits (44), Expect = 1e-015
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                       
Query: 554 gagaacgagatgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgtt 613
           ||||||||||||||||||||||||||||||||||  | |||||  ||||||||| |||| 
Sbjct: 1   gagaacgagatgaagtggtacagcaccgagtggaagcggaaccgcgaggactacagcgtg 60

                       
Query: 614 ccggacgccatg 625
           ||||||||||||
Sbjct: 61  ccggacgccatg 72

 Score = 85.7 bits (43), Expect = 5e-015
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                       
Query: 729 agctcaaggcagccatgcagaagcggctcaagtccgtcgtgtcaccctacgccggcaagg 788
           |||||||||| |||||||||||||||||||  ||| ||||| | | ||||||||||||||
Sbjct: 176 agctcaaggccgccatgcagaagcggctcagctccctcgtgacgcgctacgccggcaagg 235

                                          
Query: 789 tcatccactgggacgtggtgaacgagaacct 819
           | |||  ||||||||| || |||||||||||
Sbjct: 236 tgatcgcctgggacgttgtcaacgagaacct 266

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1152 accaggtcaagtacctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacg 1211
            |||||||  ||||||||||| | ||||| |||||||||| || |||||||||||| || |
Sbjct: 605  accaggtggagtacctggaggacgtgctgagggaaggctacggccaccccaacgtggagg 664

                
Query: 1212 gcat 1215
            ||||
Sbjct: 665  gcat 668
>gb|BQ471249.1|BQ471249 HV01N07T HV Hordeum vulgare subsp. vulgare cDNA clone HV01N07
           5-PRIME, mRNA sequence
          Length = 449

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
           |||||||||||||| |||   |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 380 tacgccggcaaggtgatcgcgtgggacgtggtgaacgagaacctgcacttcgactacttc 439

              
Query: 836 gag 838
           |||
Sbjct: 440 gag 442

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 546 ccaccttcgagaacgagatgaagtggtacagcaccgagtggac 588
           |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 150 ccaccttcgagaacgagatgaagtggtacagcacggagtggac 192

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 655 ggtgcgcgggcacaacgtgttctgggacgacc 686
           ||||||||||||||||||||||||||||||||
Sbjct: 259 ggtgcgcgggcacaacgtgttctgggacgacc 290
>gb|CA017926.1|CA017926 HV06N12r HV Hordeum vulgare subsp. vulgare cDNA clone HV06N12
           5-PRIME, mRNA sequence
          Length = 500

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 776 tacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttcttc 835
           |||||||||||||| |||   |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 379 tacgccggcaaggtgatcgcgtgggacgtggtgaacgagaacctgcacttcgactacttc 438

              
Query: 836 gag 838
           |||
Sbjct: 439 gag 441

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 546 ccaccttcgagaacgagatgaagtggtacagcaccgagtggac 588
           |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 149 ccaccttcgagaacgagatgaagtggtacagcacggagtggac 191

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 655 ggtgcgcgggcacaacgtgttctgggacgacc 686
           ||||||||||||||||||||||||||||||||
Sbjct: 258 ggtgcgcgggcacaacgtgttctgggacgacc 289
>gb|CA019576.1|CA019576 HV12G22r HV Hordeum vulgare subsp. vulgare cDNA clone HV12G22
           5-PRIME, mRNA sequence
          Length = 410

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 546 ccaccttcgagaacgagatgaagtggtacagcaccgagtggac 588
           |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 ccaccttcgagaacgagatgaagtggtacagcacggagtggac 304

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 655 ggtgcgcgggcacaacgtgttctgggacgacc 686
           ||||||||||||||||||||||||||||||||
Sbjct: 371 ggtgcgcgggcacaacgtgttctgggacgacc 402
>gb|AJ461525.1|AJ461525 AJ461525 S00002 Hordeum vulgare subsp. vulgare cDNA clone
            S0000200024H04F1, mRNA sequence
          Length = 300

 Score = 69.9 bits (35), Expect = 3e-010
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                               
Query: 1283 aacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacg 1333
            ||||||||||| ||||||   ||||||||||||||||||||||||||||||
Sbjct: 1    aacctccccgtcggcgacacggtcgacaagctcatcgccgagtggaagacg 51
>gb|BQ664105.1|BQ664105 HV01N07w HV Hordeum vulgare subsp. vulgare cDNA clone HV01N07
            3-PRIME, mRNA sequence
          Length = 421

 Score = 60.0 bits (30), Expect = 3e-007
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 1304 gtcgacaagctcatcgccgagtggaagacg 1333
            ||||||||||||||||||||||||||||||
Sbjct: 407  gtcgacaagctcatcgccgagtggaagacg 378
>gb|CA016670.1|CA016670 HV06N12u HV Hordeum vulgare subsp. vulgare cDNA clone HV06N12
            3-PRIME, mRNA sequence
          Length = 421

 Score = 60.0 bits (30), Expect = 3e-007
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 1304 gtcgacaagctcatcgccgagtggaagacg 1333
            ||||||||||||||||||||||||||||||
Sbjct: 411  gtcgacaagctcatcgccgagtggaagacg 382
>gb|AJ463273.1|AJ463273 AJ463273 S00002 Hordeum vulgare subsp. vulgare cDNA clone
            S0000200025H09F1, mRNA sequence
          Length = 180

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1164 acctggagcaggtgctcaggga 1185
            ||||||||||||||||||||||
Sbjct: 95   acctggagcaggtgctcaggga 116
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
            Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
            mRNA sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 106  acctcgtcgacaagctcaccgccga 130
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
            HVcDNA0008 (white to yellow anther) Hordeum vulgare
            subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
          Length = 828

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 230  acctcgtcgacaagctcaccgccga 254
>gb|BI950704.1|BI950704 HVSMEl0022M04f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
            infected) Hordeum vulgare subsp. vulgare cDNA clone
            HVSMEl0022M04f, mRNA sequence
          Length = 942

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 15   acctcgtcgacaagctcaccgccga 39
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
            germination shoots Hordeum vulgare subsp. vulgare cDNA
            clone bags27k10 5', mRNA sequence
          Length = 634

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 150  acctcgtcgacaagctcaccgccga 174
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
            5-PRIME, mRNA sequence
          Length = 635

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 120  acctcgtcgacaagctcaccgccga 144
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
            5-PRIME, mRNA sequence
          Length = 679

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 165  acctcgtcgacaagctcaccgccga 189
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
            5-PRIME, mRNA sequence
          Length = 572

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 129  acctcgtcgacaagctcaccgccga 153
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
            Hordeum vulgare subsp. vulgare cDNA clone
            EBem05_SQ003_E02 5', mRNA sequence
          Length = 646

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 119  acctcgtcgacaagctcaccgccga 143
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
            Hordeum vulgare subsp. vulgare cDNA clone
            EBem05_SQ003_L10 5', mRNA sequence
          Length = 464

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 67   acctcgtcgacaagctcaccgccga 91
>gb|BM373658.2|BM373658 EBma03_SQ002_E03_R maternal, 8 DPA, no treatment, cv Optic, EBma03
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma03_SQ002_E03 5', mRNA sequence
          Length = 281

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 122  acctcgtcgacaagctcaccgccga 146
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma03_SQ003_B17 5', mRNA sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 122  acctcgtcgacaagctcaccgccga 146
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
            EBca01 Hordeum vulgare subsp. vulgare cDNA clone
            EBca01_SQ004_K11 5', mRNA sequence
          Length = 746

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 63   acctcgtcgacaagctcaccgccga 87
>gb|BU970112.1|BU970112 HB13K08r BC Hordeum vulgare subsp. vulgare cDNA clone HB13K08
            5-PRIME, mRNA sequence
          Length = 380

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 276  acctcgtcgacaagctcaccgccga 300
>gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. vulgare cDNA clone HF17B16
            5-PRIME, mRNA sequence
          Length = 532

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 250  acctcgtcgacaagctcaccgccga 274
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
            5-PRIME, mRNA sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 250  acctcgtcgacaagctcaccgccga 274
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
            5-PRIME, mRNA sequence
          Length = 584

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1299 acctcgtcgacaagctcatcgccga 1323
            |||||||||||||||||| ||||||
Sbjct: 103  acctcgtcgacaagctcaccgccga 127
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,418
Number of Sequences: 312970
Number of extensions: 228418
Number of successful extensions: 70588
Number of sequences better than  0.5: 26
Number of HSP's better than  0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70531
Number of HSP's gapped (non-prelim): 56
length of query: 1827
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1808
effective length of database: 169,188,109
effective search space: 305892101072
effective search space used: 305892101072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)