BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230358.2.1
(2136 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM374081.2|BM374081 EBma03_SQ003_J12_R maternal, 8 DPA, ... 581 e-164
gb|BU986228.1|BU986228 HF11B14r HF Hordeum vulgare subsp. v... 515 e-144
gb|BU995030.1|BU995030 HM08P15r HM Hordeum vulgare subsp. v... 486 e-135
gb|BG367458.2|BG367458 HVSMEi0012F10f Hordeum vulgare 20 DA... 474 e-132
gb|BJ472069.1|BJ472069 BJ472069 K. Sato unpublished cDNA li... 448 e-124
gb|AV932343.1|AV932343 AV932343 K. Sato unpublished cDNA li... 434 e-120
gb|AV932334.1|AV932334 AV932334 K. Sato unpublished cDNA li... 422 e-116
gb|BJ470112.1|BJ470112 BJ470112 K. Sato unpublished cDNA li... 414 e-114
gb|BJ472070.1|BJ472070 BJ472070 K. Sato unpublished cDNA li... 406 e-111
gb|AV922658.1|AV922658 AV922658 K. Sato unpublished cDNA li... 377 e-102
gb|BF263429.1|BF263429 HV_CEa0006L14f Hordeum vulgare seedl... 363 2e-098
gb|BF266005.3|BF266005 HV_CEa0013O12f Hordeum vulgare seedl... 329 2e-088
gb|BU983491.1|BU983491 HA29O17r HA Hordeum vulgare subsp. v... 321 5e-086
gb|BJ476115.1|BJ476115 BJ476115 K. Sato unpublished cDNA li... 309 2e-082
gb|AV935194.1|AV935194 AV935194 K. Sato unpublished cDNA li... 307 8e-082
gb|BQ463378.1|BQ463378 HI05A18r HI Hordeum vulgare subsp. v... 280 2e-073
gb|CB883527.1|CB883527 HQ02I11w HQ Hordeum vulgare subsp. v... 268 7e-070
gb|AV935892.1|AV935892 AV935892 K. Sato unpublished cDNA li... 266 3e-069
gb|BJ473565.1|BJ473565 BJ473565 K. Sato unpublished cDNA li... 242 4e-062
gb|AV935185.1|AV935185 AV935185 K. Sato unpublished cDNA li... 232 4e-059
gb|BJ476116.1|BJ476116 BJ476116 K. Sato unpublished cDNA li... 228 6e-058
gb|BG366406.1|BG366406 HVSMEi0006P01f Hordeum vulgare 20 DA... 212 4e-053
gb|BU985927.1|BU985927 HF09B02r HF Hordeum vulgare subsp. v... 212 4e-053
gb|AJ434488.1|AJ434488 AJ434488 S00002 Hordeum vulgare subs... 149 4e-034
gb|AV927168.1|AV927168 AV927168 K. Sato unpublished cDNA li... 143 3e-032
gb|BG414353.2|BG414353 HVSMEk0001M01f Hordeum vulgare testa... 139 4e-031
gb|BQ660706.1|BQ660706 HI05A18u HI Hordeum vulgare subsp. v... 113 2e-023
gb|CA031584.1|CA031584 HX10G21r HX Hordeum vulgare subsp. v... 96 6e-018
gb|BF255566.1|BF255566 HVSMEf0007D09f Hordeum vulgare seedl... 88 1e-015
gb|CB876196.1|CB876196 HX10J04w HX Hordeum vulgare subsp. v... 84 2e-014
gb|BI779151.2|BI779151 EBro01_SQ003_C13_R root, 3 week, hyd... 80 3e-013
gb|AV933439.2|AV933439 AV933439 K. Sato unpublished cDNA li... 76 5e-012
gb|BF257905.3|BF257905 HVSMEf0014D03f Hordeum vulgare seedl... 74 2e-011
gb|BJ463304.1|BJ463304 BJ463304 K. Sato unpublished cDNA li... 62 8e-008
gb|BJ467349.1|BJ467349 BJ467349 K. Sato unpublished cDNA li... 62 8e-008
gb|BQ663999.1|BQ663999 HU04P13u HU Hordeum vulgare subsp. v... 54 2e-005
gb|BQ768693.1|BQ768693 EBro08_SQ012_M08_R root, 3 week, dro... 54 2e-005
gb|CA005680.1|CA005680 HU09E01u HU Hordeum vulgare subsp. v... 54 2e-005
gb|BE214285.1|BE214285 HV_CEb0003A03f Hordeum vulgare seedl... 52 8e-005
gb|BE215595.1|BE215595 HV_CEb0007B02f Hordeum vulgare seedl... 52 8e-005
gb|BE519829.1|BE519829 HV_CEb0021G06f Hordeum vulgare seedl... 52 8e-005
gb|BE559430.1|BE559430 HV_CEb0024K12f Hordeum vulgare seedl... 52 8e-005
gb|BF065173.1|BF065173 HV_CEb0023M12f Hordeum vulgare seedl... 52 8e-005
gb|BF065430.1|BF065430 HV_CEb0012G14f Hordeum vulgare seedl... 52 8e-005
gb|BF261998.2|BF261998 HV_CEa0002M15f Hordeum vulgare seedl... 52 8e-005
gb|BF262601.2|BF262601 HV_CEa0004H01f Hordeum vulgare seedl... 52 8e-005
gb|BF264160.2|BF264160 HV_CEa0008K24f Hordeum vulgare seedl... 52 8e-005
gb|BF264308.2|BF264308 HV_CEa0009B07f Hordeum vulgare seedl... 52 8e-005
gb|BF264569.2|BF264569 HV_CEa0009M13f Hordeum vulgare seedl... 52 8e-005
gb|BF266375.2|BF266375 HV_CEa0014P13f Hordeum vulgare seedl... 52 8e-005
gb|BF266784.2|BF266784 HV_CEa0016A20f Hordeum vulgare seedl... 52 8e-005
gb|BF267137.2|BF267137 HV_CEa0017A22f Hordeum vulgare seedl... 52 8e-005
gb|BE214559.2|BE214559 HV_CEb0003M24f Hordeum vulgare seedl... 52 8e-005
gb|BE214683.2|BE214683 HV_CEb0004D06f Hordeum vulgare seedl... 52 8e-005
gb|BE214848.2|BE214848 HV_CEb0004N12f Hordeum vulgare seedl... 52 8e-005
gb|BE215074.2|BE215074 HV_CEb0005L13f Hordeum vulgare seedl... 52 8e-005
gb|BE215726.2|BE215726 HV_CEb0008F05f Hordeum vulgare seedl... 52 8e-005
gb|BE216808.2|BE216808 HV_CEb0011K14f Hordeum vulgare seedl... 52 8e-005
gb|BF064648.2|BF064648 HV_CEb0016K09f Hordeum vulgare seedl... 52 8e-005
gb|BE519712.2|BE519712 HV_CEb0018M02f Hordeum vulgare seedl... 52 8e-005
gb|BE558918.2|BE558918 HV_CEb0020M10f Hordeum vulgare seedl... 52 8e-005
gb|BE519950.2|BE519950 HV_CEb0021M24f Hordeum vulgare seedl... 52 8e-005
gb|BF263375.3|BF263375 HV_CEa0006J08f Hordeum vulgare seedl... 52 8e-005
gb|BF266886.3|BF266886 HV_CEa0016F07f Hordeum vulgare seedl... 52 8e-005
gb|BE213858.2|BE213858 HV_CEb0001H13f Hordeum vulgare seedl... 52 8e-005
gb|BE215029.3|BE215029 HV_CEb0005J09f Hordeum vulgare seedl... 52 8e-005
gb|BE216126.2|BE216126 HV_CEb0009I10f Hordeum vulgare seedl... 52 8e-005
gb|BE216225.3|BE216225 HV_CEb0009O08f Hordeum vulgare seedl... 52 8e-005
gb|BF065566.2|BF065566 HV_CEb0012M16f Hordeum vulgare seedl... 52 8e-005
gb|BE519468.3|BE519468 HV_CEb0016B04f Hordeum vulgare seedl... 52 8e-005
gb|BE558400.2|BE558400 HV_CEb0017I09f Hordeum vulgare seedl... 52 8e-005
gb|BJ463296.1|BJ463296 BJ463296 K. Sato unpublished cDNA li... 50 3e-004
gb|BF262490.2|BF262490 HV_CEa0004B21f Hordeum vulgare seedl... 48 0.001
gb|BF264884.2|BF264884 HV_CEa0010K09f Hordeum vulgare seedl... 48 0.001
gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA li... 48 0.001
gb|BE214525.3|BE214525 HV_CEb0003L08f Hordeum vulgare seedl... 46 0.005
gb|BI778777.2|BI778777 EBro01_SQ001_H06_R root, 3 week, hyd... 44 0.019
gb|BM101004.2|BM101004 EBpi01_SQ002_J03_R pistil, 1 DPA, no... 42 0.075
gb|BJ468873.1|BJ468873 BJ468873 K. Sato unpublished cDNA li... 40 0.29
gb|BI780740.2|BI780740 EBes01_SQ002_A07_R embryo sac, 4-6 D... 40 0.29
gb|BU966755.1|BU966755 HB02E05r BC Hordeum vulgare subsp. v... 40 0.29
gb|BU967283.1|BU967283 HB03N04r BC Hordeum vulgare subsp. v... 40 0.29
gb|CB881167.1|CB881167 HM08P15w HM Hordeum vulgare subsp. v... 40 0.29
gb|AF085166.1|AF085166 Hordeum vulgare receptor-like kinase... 40 0.29
gb|AF085167.1|AF085167 Hordeum vulgare receptor-like kinase... 40 0.29
>gb|BM374081.2|BM374081 EBma03_SQ003_J12_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J12 5', mRNA sequence
Length = 552
Score = 581 bits (293), Expect = e-164
Identities = 485/549 (88%)
Strand = Plus / Minus
Query: 894 cagatcccagtgcaatccgtcttcttggttcccagctaagaggtggctcagatggctgcc 953
||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||||||| |
Sbjct: 552 cagatccaagtgcaattcgtcttctggtatcccaatcaaggggtggttcagatggctgac 493
Query: 954 gctctcgtaaacgtgatgccacactcccgttagccatgtatgggtagactaacaaccttt 1013
||||||| ||||||||||| ||||| || || ||||||||||| ||||||| || | ||
Sbjct: 492 gctctcgcaaacgtgatgcaacactgccattggccatgtatggatagactagtaatcgtt 433
Query: 1014 cagtaggtgtcatgcagaaaccacgaagtcggagaaggttcttgtgcaccgccatgctaa 1073
|||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 432 cagtaggtgtcatgcaaaaaccacgaagtcggagaaggttcctatgcactgccatgctaa 373
Query: 1074 tcatctcaacctctgtttggaactgaagctcaccaccaggtgtacgctcctcttttagtc 1133
|||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 372 tcatctcaacttccgtttggaactgaagctcgccaccaggggtacgctcctcttttagtc 313
Query: 1134 ttttcactgctaccaatgagccatcagcaagccttcctttgtacacttttccaaaaccgc 1193
||||||| |||||||||| ||||| |||||||| || |||||||||||||||||||| |
Sbjct: 312 ttttcaccgctaccaatgtaccatctgcaagcctccccttgtacacttttccaaaaccac 253
Query: 1194 ctcttcctaaaatgttcttgttactgaaattatcagttgcaacttgaagctcccgcaatg 1253
||||||||||||||||||| ||| | || || |||| ||||||||||||||| |||||||
Sbjct: 252 ctcttcctaaaatgttcttattattaaagttgtcagatgcaacttgaagctctcgcaatg 193
Query: 1254 aaaactttttgagctgaccaagatggacttctggatcctcctcggcaggaacatcgaaga 1313
| ||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 192 agaacttcttaagctgaccaagatgaacttctggatcttcctcagcaggcacatcaaaga 133
Query: 1314 aatgctcttcaggtttacgacggcgccacattgcaaatgcaattgcaggaacagcaaaca 1373
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 132 aatgttcttcaggtttacgacggcgccacattgcaaatgcaatagcaggaacagcaaaca 73
Query: 1374 ccaatgctgcaccagcagcaacacctccagctattgctccagtgctagaagcaccagtag 1433
||| ||| |||||||||||||| || || || || |||||||||||||| ||||| | |
Sbjct: 72 ccagtgcagcaccagcagcaacgccacctgcgatggctccagtgctagaggcacctgctg 13
Query: 1434 attgagttg 1442
|||||||||
Sbjct: 12 attgagttg 4
>gb|BU986228.1|BU986228 HF11B14r HF Hordeum vulgare subsp. vulgare cDNA clone HF11B14
5-PRIME, mRNA sequence
Length = 468
Score = 515 bits (260), Expect = e-144
Identities = 404/452 (89%)
Strand = Plus / Minus
Query: 991 gtatgggtagactaacaacctttcagtaggtgtcatgcagaaaccacgaagtcggagaag 1050
|||||| ||||||| || | |||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 gtatggatagactagtaatcgttcagtaggtgtcatgcaaaaaccacgaagtcggagaag 409
Query: 1051 gttcttgtgcaccgccatgctaatcatctcaacctctgtttggaactgaagctcaccacc 1110
|||| | ||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 408 gttcctatgcactgccatgctaatcatctcaacttccgtttggaactgaagctcgccacc 349
Query: 1111 aggtgtacgctcctcttttagtcttttcactgctaccaatgagccatcagcaagccttcc 1170
||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct: 348 aggggtacgctcctcttttagtcttttcaccgctaccaatgtaccatctgcaagcctccc 289
Query: 1171 tttgtacacttttccaaaaccgcctcttcctaaaatgttcttgttactgaaattatcagt 1230
|||||||||||||||||||| |||||||||||||||||||| ||| | || || ||||
Sbjct: 288 cttgtacacttttccaaaaccacctcttcctaaaatgttcttattattaaagttgtcaga 229
Query: 1231 tgcaacttgaagctcccgcaatgaaaactttttgagctgaccaagatggacttctggatc 1290
||||||||||||||| |||||||| ||||| || |||||||||||||| |||||||||||
Sbjct: 228 tgcaacttgaagctctcgcaatgagaacttcttaagctgaccaagatgaacttctggatc 169
Query: 1291 ctcctcggcaggaacatcgaagaaatgctcttcaggtttacgacggcgccacattgcaaa 1350
||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 168 ttcctcagcaggcacatcaaagaaatgttcttcaggtttacgacggcgccacattgcaaa 109
Query: 1351 tgcaattgcaggaacagcaaacaccaatgctgcaccagcagcaacacctccagctattgc 1410
|||||| ||||||||||||||||||| ||| |||||||||||||| || || || || ||
Sbjct: 108 tgcaatagcaggaacagcaaacaccagtgcagcaccagcagcaacgccacctgcgatggc 49
Query: 1411 tccagtgctagaagcaccagtagattgagttg 1442
|||||||||||| ||||| | ||||||||||
Sbjct: 48 tccagtgctagaggcacctgctgattgagttg 17
>gb|BU995030.1|BU995030 HM08P15r HM Hordeum vulgare subsp. vulgare cDNA clone HM08P15
5-PRIME, mRNA sequence
Length = 574
Score = 486 bits (245), Expect = e-135
Identities = 471/545 (86%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 368 tcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttgga 427
||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 567 tcccagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggc 508
Query: 428 cggtccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcg 487
||||||| || || ||||||||||| || || |||||||| || || ||||||||||
Sbjct: 507 cggtccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcg 448
Query: 488 acctcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttc 547
|||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 447 tgctccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttc 388
Query: 548 aacagtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctaga 607
| ||| ||||||||||||||||| ||||| |||||||| ||||| |||||||| || ||
Sbjct: 387 agcagccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgagg 328
Query: 608 tcaaatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatca 667
||||| |||||||| ||||| |||||||||||||||||||| || || || ||||||||
Sbjct: 327 tcaaacgccctctgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatcc 268
Query: 668 gtcttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttcca 727
||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 267 gtcttctcagaggacttcccggtggataggtactcgggagcaatgtgcccgatcgttcca 208
Query: 728 cgaacagctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatca 787
|| |||||||| || ||||| || ||||||||||||||||||||||| || || || ||
Sbjct: 207 cggacagctgtggttacatgagtgtccttgtagtccataagcttggccagtccaaagtcg 148
Query: 788 cccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatgg 847
|||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct: 147 cccacaaccgcctcaaagtcttcatccaagagaatgtttgcagctttgacatcacgatga 88
Query: 848 atgattttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatcccagtgca 907
||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 87 atgatcttgggatcacagtgatcatgcaagtaagacagtcctc-ggcagatcccagtgcg 29
Query: 908 atccg 912
|||||
Sbjct: 28 atccg 24
>gb|BG367458.2|BG367458 HVSMEi0012F10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012F10f, mRNA sequence
Length = 679
Score = 474 bits (239), Expect = e-132
Identities = 449/519 (86%)
Strand = Plus / Minus
Query: 380 gccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacggtccaggggg 439
||||||||||| || || |||||||||||||||||||||||||| || ||||||| ||
Sbjct: 519 gccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccggtccatcggt 460
Query: 440 gagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacctcctcgtag 499
|| ||||||||||| || || |||||||| || || |||||||||| |||| ||||
Sbjct: 459 gacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgctccacgtac 400
Query: 500 gctttctgcagatctgggtccaccagcatctccaccttcttctccttcaacagtcctttc 559
| ||||||| || ||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct: 399 acgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagcagccctttc 340
Query: 560 acccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccctc 619
||||||||||| ||||| |||||||| ||||| |||||||| || || ||||| ||||||
Sbjct: 339 acccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgaggtcaaacgccctc 280
Query: 620 tggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttctcagaa 679
|| ||||| |||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 279 tgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatccgtcttctcagag 220
Query: 680 gacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaacagctgtt 739
||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 219 gacttcccggtggataggtactcgggagcaatgtgcccgatcgttccacggacagctgtg 160
Query: 740 gtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcc 799
|| ||||| || ||||||||||||||||||||||| || || || || |||||||| |||
Sbjct: 159 gttacatgagtgtccttgtagtccataagcttggccagtccaaagtcgcccacaaccgcc 100
Query: 800 tcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgattttggga 859
|| ||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 99 tcaaagtcttcatccaagagaatgtttgcagctttgacatcacgatgaatgatcttggga 40
Query: 860 tcgcagtgatcatgcaagtaagaaagtcctcttgcagat 898
|| |||||||||||||||||||| |||||||| ||||||
Sbjct: 39 tcacagtgatcatgcaagtaagacagtcctctggcagat 1
>gb|BJ472069.1|BJ472069 BJ472069 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b05 5', mRNA sequence
Length = 594
Score = 448 bits (226), Expect = e-124
Identities = 484/570 (84%)
Strand = Plus / Minus
Query: 259 gccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtcattgcggag 318
||||||||||||||| || || |||||| | ||||| |||||||||||||| ||| | |
Sbjct: 594 gccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgtcg 535
Query: 319 cggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcccaacgctc 378
||| ||| ||| |||||||||| |||||||| || |||||||| || ||||| |||||
Sbjct: 534 cggagccagctccgcctcctgccggaccacctccaccttctgccactcctcccagcgctc 475
Query: 379 tgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacggtccagggg 438
||||||||||| || || |||||||||||||||||||||||||| || ||||||| ||
Sbjct: 474 cgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccggtccatcgg 415
Query: 439 ggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacctcctcgta 498
|| ||||||||||| || || |||||||| || || |||||||||| |||| ||||
Sbjct: 414 tgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgctccacgta 355
Query: 499 ggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaacagtccttt 558
| ||||||| || ||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct: 354 cacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagcagcccttt 295
Query: 559 cacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccct 618
|||||||||||| ||||| |||||||| ||||| |||||||| || || ||||| |||||
Sbjct: 294 cacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgaggtcaaacgccct 235
Query: 619 ctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttctcaga 678
||| ||||| |||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 234 ctgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatccgtcttctcaga 175
Query: 679 agacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaacagctgt 738
||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 174 ggacttcccggtggataggtactcgggagcaatgtgcccgatcgttccacggacagctgt 115
Query: 739 tgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgc 798
|| ||||| || ||||||||||||||||||||||| || || || || |||||||| ||
Sbjct: 114 ggttacatgagtgtccttgtagtccataagcttggccagtccaaagtcgcccacaaccgc 55
Query: 799 ctcgaagtcctcatccaaaagaatatttgc 828
||| ||||| |||||||| ||||| |||||
Sbjct: 54 ctcaaagtcttcatccaagagaatgtttgc 25
>gb|AV932343.1|AV932343 AV932343 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d19 5', mRNA sequence
Length = 559
Score = 434 bits (219), Expect = e-120
Identities = 459/539 (85%)
Strand = Plus / Minus
Query: 290 gtggaatcgacgatccagtcattgcggagcggtgccgactcagcctcctgcctcaccacc 349
||||| |||||||||||||| ||| | |||| ||| ||| |||||||||| ||||||
Sbjct: 555 gtggagtcgacgatccagtcgttgtgtcgcggagccagctccgcctcctgccggaccacc 496
Query: 350 tctactttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcacc 409
|| || |||||||| || ||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 495 tccaccttctgccactcctcccagcgctccgccagcccgtcgccctccagcatcctcacc 436
Query: 410 acctccgacatctttggacggtccaggggggagccctgcgtgcagaggagtgccacctga 469
|||||||||||||| || ||||||| || || ||||||||||| || || ||||||||
Sbjct: 435 acctccgacatcttgggccggtccatcggtgacccctgcgtgcacagcagcgccacctgg 376
Query: 470 ataaggctctccacctcgacctcctcgtaggctttctgcagatctgggtccaccagcatc 529
|| || |||||||||| |||| |||| | ||||||| || |||||||||||||||
Sbjct: 375 atcagcgcctccacctcgtgctccacgtacacgctctgcaggtccgggtccaccagcatc 316
Query: 530 tccaccttcttctccttcaacagtcctttcacccagtcaagaagcataacatcgtcatca 589
|||||||||||||| |||| ||| ||||||||||||||||| ||||| |||||||| |||
Sbjct: 315 tccaccttcttctctttcagcagccctttcacccagtcaagcagcatgacatcgtcgtca 256
Query: 590 tttgcaagacgagctagatcaaatgccctctggccagtaataagctccagaagcatgatc 649
|| |||||||| || || ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 255 ttcgcaagacgtgcgaggtcaaacgccctctgtccagtgataagctccagaagcatgatg 196
Query: 650 ccatagccaaaaacatcagtcttctcagaagacttgccggtagataggtactcgggagca 709
|| || || |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 195 ccgtaaccgaaaacatccgtcttctcagaggacttcccggtggataggtactcgggagca 136
Query: 710 atgtgcccaattgttccacgaacagctgttgtgacatgggtatccttgtagtccataagc 769
|||||||| || |||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct: 135 atgtgcccgatcgttccacggacagctgtggttacatgagtgtccttgtagtccataagc 76
Query: 770 ttggcaagcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgc 828
||||| || || || || |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 75 ttggccagtccaaagtcgcccacaaccgcctcaaagtcttcatccaaaagaatgtttgc 17
>gb|AV932334.1|AV932334 AV932334 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d08 5', mRNA sequence
Length = 566
Score = 422 bits (213), Expect = e-116
Identities = 453/533 (84%)
Strand = Plus / Minus
Query: 296 tcgacgatccagtcattgcggagcggtgccgactcagcctcctgcctcaccacctctact 355
|||||||||||||| ||| | |||| ||| ||| |||||||||| |||||||| ||
Sbjct: 562 tcgacgatccagtcgttgtgtcgcggagccagctccgcctcctgccggaccacctccacc 503
Query: 356 ttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctcc 415
|||||||| || ||||| ||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 502 ttctgccactcctcccagcgctccgccagcccgtcgccctccagcatcctcaccacctcc 443
Query: 416 gacatctttggacggtccaggggggagccctgcgtgcagaggagtgccacctgaataagg 475
|||||||| || ||||||| || || ||||||||||| || || |||||||| || ||
Sbjct: 442 gacatcttgggccggtccatcggtgacccctgcgtgcacagcagcgccacctggatcagc 383
Query: 476 ctctccacctcgacctcctcgtaggctttctgcagatctgggtccaccagcatctccacc 535
|||||||||| |||| |||| | ||||||| || |||||||||||||||||||||
Sbjct: 382 gcctccacctcgtgctccacgtacacgctctgcaggtccgggtccaccagcatctccacc 323
Query: 536 ttcttctccttcaacagtcctttcacccagtcaagaagcataacatcgtcatcatttgca 595
|||||||| |||| ||| ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct: 322 ttcttctctttcagcagccctttcacccagtcaagcagcatgacatcgtcgtcattcgca 263
Query: 596 agacgagctagatcaaatgccctctggccagtaataagctccagaagcatgatcccatag 655
||||| || || ||||| |||||||| ||||| |||||||||||||||||||| || ||
Sbjct: 262 agacgtgcgaggtcaaacgccctctgtccagtgataagctccagaagcatgatgccgtaa 203
Query: 656 ccaaaaacatcagtcttctcagaagacttgccggtagataggtactcgggagcaatgtgc 715
|| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 202 ccgaaaacatccgtcttctcagaggacttcccggtggataggtactcgggagcaatgtgc 143
Query: 716 ccaattgttccacgaacagctgttgtgacatgggtatccttgtagtccataagcttggca 775
|| || |||||||| |||||||| || ||||| || |||||||||||||||||||||||
Sbjct: 142 ccgatcgttccacggacagctgtggttacatgagtgtccttgtagtccataagcttggcc 83
Query: 776 agcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgc 828
|| || || || |||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 82 agtccaaagtcgcccacaaccgcctcaaagtcttcatccaagagaatgtttgc 30
>gb|BJ470112.1|BJ470112 BJ470112 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15f09 5', mRNA sequence
Length = 562
Score = 414 bits (209), Expect = e-114
Identities = 425/497 (85%)
Strand = Plus / Minus
Query: 332 gcctcctgcctcaccacctctactttctgccattcgtcccaacgctctgccagcccgtca 391
|||||||||| |||||||| || |||||||| || ||||| ||||| |||||||||||
Sbjct: 531 gcctcctgccggaccacctccaccttctgccactcctcccagcgctccgccagcccgtcg 472
Query: 392 ccttcgagcatcctcaccacctccgacatctttggacggtccaggggggagccctgcgtg 451
|| || |||||||||||||||||||||||||| || ||||||| || || |||||||||
Sbjct: 471 ccctccagcatcctcaccacctccgacatcttgggccggtccatcggtgacccctgcgtg 412
Query: 452 cagaggagtgccacctgaataaggctctccacctcgacctcctcgtaggctttctgcaga 511
|| || || |||||||| || || |||||||||| |||| |||| | |||||||
Sbjct: 411 cacagcagcgccacctggatcagcgcctccacctcgtgctccacgtacacgctctgcagg 352
Query: 512 tctgggtccaccagcatctccaccttcttctccttcaacagtcctttcacccagtcaaga 571
|| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 351 tccgggtccaccagcatctccaccttcttctctttcagcagccctttcacccagtcaagc 292
Query: 572 agcataacatcgtcatcatttgcaagacgagctagatcaaatgccctctggccagtaata 631
||||| |||||||| ||||| |||||||| || || ||||| |||||||| ||||| |||
Sbjct: 291 agcatgacatcgtcgtcattcgcaagacgtgcgaggtcaaacgccctctgtccagtgata 232
Query: 632 agctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggta 691
||||||||||||||||| || || || |||||||| ||||||||||| ||||| |||||
Sbjct: 231 agctccagaagcatgatgccgtaaccgaaaacatccgtcttctcagaggacttcccggtg 172
Query: 692 gataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggta 751
|||||||||||||||||||||||||| || |||||||| |||||||| || ||||| ||
Sbjct: 171 gataggtactcgggagcaatgtgcccgatcgttccacggacagctgtggttacatgagtg 112
Query: 752 tccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcgaagtcctca 811
||||||||||||||||||||||| || || || || |||||||| ||||| ||||| |||
Sbjct: 111 tccttgtagtccataagcttggccagtccaaagtcgcccacaaccgcctcaaagtcttca 52
Query: 812 tccaaaagaatatttgc 828
||||| ||||| |||||
Sbjct: 51 tccaagagaatgtttgc 35
>gb|BJ472070.1|BJ472070 BJ472070 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b06 5', mRNA sequence
Length = 525
Score = 406 bits (205), Expect = e-111
Identities = 415/485 (85%)
Strand = Plus / Minus
Query: 344 accacctctactttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatc 403
|||||||| || |||||||| || ||||| ||||| ||||||||||| || || ||||||
Sbjct: 523 accacctccaccttctgccactcctcccagcgctccgccagcccgtcgccctccagcatc 464
Query: 404 ctcaccacctccgacatctttggacggtccaggggggagccctgcgtgcagaggagtgcc 463
|||||||||||||||||||| || ||||||| || || ||||||||||| || || |||
Sbjct: 463 ctcaccacctccgacatcttgggccggtccatcggtgacccctgcgtgcacagcagcgcc 404
Query: 464 acctgaataaggctctccacctcgacctcctcgtaggctttctgcagatctgggtccacc 523
||||| || || |||||||||| |||| |||| | ||||||| || |||||||||
Sbjct: 403 acctggatcagcgcctccacctcgtgctccacgtacacgctctgcaggtccgggtccacc 344
Query: 524 agcatctccaccttcttctccttcaacagtcctttcacccagtcaagaagcataacatcg 583
|||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 343 agcatctccaccttcttctctttcagcagccctttcacccagtcaagcagcatgacatcg 284
Query: 584 tcatcatttgcaagacgagctagatcaaatgccctctggccagtaataagctccagaagc 643
|| ||||| |||||||| || || ||||| |||||||| ||||| |||||||||||||||
Sbjct: 283 tcgtcattcgcaagacgtgcgaggtcaaacgccctctgtccagtgataagctccagaagc 224
Query: 644 atgatcccatagccaaaaacatcagtcttctcagaagacttgccggtagataggtactcg 703
||||| || || || |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct: 223 atgatgccgtaaccgaaaacatccgtcttctcagaggacttcccggtggataggtactcg 164
Query: 704 ggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggtatccttgtagtcc 763
|||||||||||||| || |||||||| |||||||| || ||||| || ||||||||||||
Sbjct: 163 ggagcaatgtgcccgatcgttccacggacagctgtggttacatgagtgtccttgtagtcc 104
Query: 764 ataagcttggcaagcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaata 823
||||||||||| || || || || |||||||| ||||| ||||| |||||||| |||||
Sbjct: 103 ataagcttggccagtccaaagtcgcccacaaccgcctcaaagtcttcatccaagagaatg 44
Query: 824 tttgc 828
|||||
Sbjct: 43 tttgc 39
>gb|AV922658.1|AV922658 AV922658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd0c01 5', mRNA sequence
Length = 505
Score = 377 bits (190), Expect = e-102
Identities = 395/462 (85%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 368 tcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttgga 427
||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 495 tcccagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggc 436
Query: 428 cggtccaggggggagccctgcgtgcagagga-gtgccacctgaataaggctctccacctc 486
||||||| || || ||||||||||| || | | |||||||| || || |||||||||
Sbjct: 435 cggtccatcggtgacccctgcgtgcacagcaagcgccacctggatcagcgcctccacctc 376
Query: 487 gacctcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctcctt 546
| |||| |||| | ||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 375 gtgctccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctcttt 316
Query: 547 caacagtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctag 606
|| ||| ||||||||||||||||| ||||| |||||||| ||||| |||||||| || ||
Sbjct: 315 cagcagccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgag 256
Query: 607 atcaaatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatc 666
||||| |||||||| ||||| |||||||||||||||||||| || || || ||||||||
Sbjct: 255 gtcaaacgccctctgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatc 196
Query: 667 agtcttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttcc 726
||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct: 195 cgtcttctcagaggacttcccggtggataggtactcgggagcaatgtgcccgatcgttcc 136
Query: 727 acgaacagctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatc 786
||| |||||||| || ||||| || ||||||||||||||||||||||| || || || ||
Sbjct: 135 acggacagctgtggttacatgagtgtccttgtagtccataagcttggccagtccaaagtc 76
Query: 787 acccacaactgcctcgaagtcctcatccaaaagaatatttgc 828
|||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 75 gcccacaaccgcctcaaagtcttcatccaagagaatgtttgc 34
>gb|BF263429.1|BF263429 HV_CEa0006L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006L14f, mRNA sequence
Length = 914
Score = 363 bits (183), Expect = 2e-098
Identities = 491/583 (84%), Gaps = 8/583 (1%)
Strand = Plus / Plus
Query: 254 cttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtcattg 313
|||||||| ||||| ||||| || || ||||| || ||||| || || |||||||| |||
Sbjct: 274 cttgggccagacagttccactgcgcggaggttatatgtggagtcaacaatccagtcgttg 333
Query: 314 cggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcccaa 373
|| || || ||| ||| ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 334 cgaagaggagccagctctgcctcctgcctgaccacctccaccttctgccattcctcccat 393
Query: 374 cgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacggtcc 433
| |||||||| ||||||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 394 ctctctgccaagccgtcaccttccagcatcctcaccacctctgacatcttggggcgctcc 453
Query: 434 aggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacctcc 493
| || ||||||||||||||||| || |||||||| || || ||||||||| ||||
Sbjct: 454 actggtgagccctgcgtgcagagcagcgccacctggatcagcgattccacctcggtctcc 513
Query: 494 tcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaacagt 553
|||||| |||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct: 514 tcgtagttgctctgcaagtccgggtccaccagcatctcaacctttttctccttcaacaac 573
Query: 554 cctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaat 613
|||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 574 cctttcacccagtcaagaagcataccatcgtcatcatttgcaaggcgagcaagatcaaat 633
Query: 614 gccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttc 673
|||||||| ||| |||||||||||||||| |||| || || || ||||||| ||||||
Sbjct: 634 gccctctgcccaataataagctccagaagtgtgattccgtacccgaaaacat-agtctt- 691
Query: 674 tcaga-agacttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaac 732
| ||| ||||| || || ||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 692 ttagagggactt-ccagtggataggtactcaggagcaatgtgtccaattggtccacgaac 750
Query: 733 agctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcacccac 792
||| || || ||||| ||||||| ||| |||||||| |||||| |||| |||| ||||||
Sbjct: 751 agcagtagttacatgagtatcctggtaatccataag-ttggcacgccc-aaataacccac 808
Query: 793 aactgcctcgaagtcctcatccaaaagaatatttgcagctttg 835
| |||||| |||||||| |||||||| |||||||| ||||||
Sbjct: 809 acctgcct-gaagtcctggtccaaaag-atatttgccgctttg 849
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 168 agctacctttcatatacacaagcagcaattagactgaat 206
||||||||||||||| ||||| || ||||||| ||||||
Sbjct: 185 agctacctttcatattcacaaacaacaattaggctgaat 223
>gb|BF266005.3|BF266005 HV_CEa0013O12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013O12f, mRNA sequence
Length = 796
Score = 329 bits (166), Expect = 2e-088
Identities = 305/350 (87%), Gaps = 1/350 (0%)
Strand = Plus / Minus
Query: 504 tctgcagatctgggtccaccagcatctccaccttcttctccttcaacagtcctttcaccc 563
||||||| || ||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 355 tctgcaggtccgggtccaccagcatctccaccttcttctctttcagcagccctttcaccc 296
Query: 564 agtcaagaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccctctggc 623
||||||| ||||| ||||||| ||||| |||||||| || || ||||| |||||||| |
Sbjct: 295 agtcaagcagcatgacatcgttgtcattcgcaagacgtgcgaggtcaaacgccctctgtc 236
Query: 624 cagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagact 683
|||| |||||||||||||||||||| || || || |||||||| ||||||||||| ||||
Sbjct: 235 cagtgataagctccagaagcatgatgccgtaaccgaaaacatccgtcttctcagaggact 176
Query: 684 tgccggtagataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtga 743
| ||||| |||||||||||||||||||||||||| || |||||||| |||||||| || |
Sbjct: 175 tcccggtggataggtactcgggagcaatgtgcccgatcgttccacggacagctgtggtta 116
Query: 744 catgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctc-g 802
|||| || ||||||||||||||||||||||| || || || || |||||||| |||||
Sbjct: 115 catgagtgtccttgtagtccataagcttggccagtccaaagtcgcccacaaccgcctcac 56
Query: 803 aagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgat 852
|||| |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 55 cagtcttcatccaagagaatgtttgcagctttgacatcacgatgaatgat 6
>gb|BU983491.1|BU983491 HA29O17r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O17
5-PRIME, mRNA sequence
Length = 514
Score = 321 bits (162), Expect = 5e-086
Identities = 366/434 (84%)
Strand = Plus / Minus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 445 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 386
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 385 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 326
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 325 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 266
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 265 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 206
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 205 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 146
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatca 610
|| ||||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||
Sbjct: 145 agccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgaggtca 86
Query: 611 aatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|| |||||||| ||||| |||||||||||||||||||| || || || |||||||| |||
Sbjct: 85 aacgccctctgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatccgtc 26
Query: 671 ttctcagaagactt 684
|||||||| |||||
Sbjct: 25 ttctcagaggactt 12
>gb|BJ476115.1|BJ476115 BJ476115 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b05 3', mRNA sequence
Length = 708
Score = 309 bits (156), Expect = 2e-082
Identities = 357/424 (84%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 285 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 344
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 345 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 404
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 405 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 464
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 465 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 524
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 525 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 584
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatca 610
|| ||||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||
Sbjct: 585 agccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgaggtca 644
Query: 611 aatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|| |||||||| ||||| |||||||||||||||||||| || || || |||||||| |||
Sbjct: 645 aacgccctctgtccagtgataagctccagaagcatgatgccgtaaccgaaaacatccgtc 704
Query: 671 ttct 674
||||
Sbjct: 705 ttct 708
>gb|AV935194.1|AV935194 AV935194 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d19 3', mRNA sequence
Length = 687
Score = 307 bits (155), Expect = 8e-082
Identities = 360/427 (84%), Gaps = 1/427 (0%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 261 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 320
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 321 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 380
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 381 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 440
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 441 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 500
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 501 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 560
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatca 610
|| ||||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||
Sbjct: 561 agccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaagacgtgcgaggtca 620
Query: 611 aatgccctctggccagtaataagctccagaagcatgat-cccatagccaaaaacatcagt 669
|| |||||||| ||||| |||||||||||||||||||| ||| || || |||||||| ||
Sbjct: 621 aacgccctctgtccagtgataagctccagaagcatgatgcccgtaaccgaaaacatccgt 680
Query: 670 cttctca 676
|||||||
Sbjct: 681 cttctca 687
>gb|BQ463378.1|BQ463378 HI05A18r HI Hordeum vulgare subsp. vulgare cDNA clone HI05A18
5-PRIME, mRNA sequence
Length = 570
Score = 280 bits (141), Expect = 2e-073
Identities = 267/309 (86%)
Strand = Plus / Minus
Query: 1742 ttgttcatatacagatccaaactgaccaggttagtcaggttccccagttcagggggtatt 1801
||||||| ||||||||||||||||||||||| |||| |||||| ||||| ||||||
Sbjct: 566 ttgttcaggtacagatccaaactgaccaggtttgtcaagttcccaagttccaaaggtatt 507
Query: 1802 gtcccacttatgttgttgctgtaaagctccaaatattggagatttttcagctggccaagt 1861
|||||||||| ||||||||||| |||||||||||||| |||||||||| ||| ||||||
Sbjct: 506 atcccacttatattgttgctgtacagctccaaatattgtagatttttcaactgtccaagt 447
Query: 1862 tgtggcactagaacgccagataattgtgcatttccaaggtcaactctgataacactgtta 1921
|| | ||| | | || || | |||||| |||||||| ||||||||||| ||||||||
Sbjct: 446 tgggacaccaatgcacctgacagttgtgcgtttccaagatcaactctgattacactgttg 387
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 386 tcggtgttacaagtaacatggaaccatgtgcatggattaaccagagtgggatcccaactc 327
Query: 1982 tgcaagacattgttagcatctttcaagctctgacgcaggctgtacagggcatcaccctcg 2041
|||| ||||||||||||||||| | ||| || ||||| |||||||| |||||||||||
Sbjct: 326 tgcagcacattgttagcatctttaaggctttggcgcagactgtacagagcatcaccctct 267
Query: 2042 gtgttggcg 2050
|||||||||
Sbjct: 266 gtgttggcg 258
>gb|CB883527.1|CB883527 HQ02I11w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02I11
3-PRIME, mRNA sequence
Length = 625
Score = 268 bits (135), Expect = 7e-070
Identities = 257/298 (86%)
Strand = Plus / Minus
Query: 1753 cagatccaaactgaccaggttagtcaggttccccagttcagggggtattgtcccacttat 1812
||||||||||||||||||||| ||| |||||| ||||| |||||| ||||||||||
Sbjct: 625 cagatccaaactgaccaggttgntcaagttcccaagttccaaaggtattatcccacttat 566
Query: 1813 gttgttgctgtaaagctccaaatattggagatttttcagctggccaagttgtggcactag 1872
||||||||||| |||||||||||||| |||||||||| ||| |||||||| | ||| |
Sbjct: 565 attgttgctgtacagctccaaatattgtagatttttcaactgtccaagttgggacaccaa 506
Query: 1873 aacgccagataattgtgcatttccaaggtcaactctgataacactgttatcgttgttaca 1932
| || || | |||||| |||||||| ||||||||||| |||||||| ||| |||||||
Sbjct: 505 tgcacctgacagttgtgcgtttccaagatcaactctgattacactgttgtcggtgttaca 446
Query: 1933 cgtaacatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacatt 1992
||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 445 agtaacatggaaccatgtgcatggattaaccagagtgggatcccaactctgcagcacatt 386
Query: 1993 gttagcatctttcaagctctgacgcaggctgtacagggcatcaccctcggtgttggcg 2050
|||||||||||| | ||| || ||||| |||||||| ||||||||||| |||||||||
Sbjct: 385 gttagcatctttaaggctttggcgcagactgtacagagcatcaccctctgtgttggcg 328
>gb|AV935892.1|AV935892 AV935892 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6o07 3', mRNA sequence
Length = 713
Score = 266 bits (134), Expect = 3e-069
Identities = 350/418 (83%), Gaps = 3/418 (0%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 285 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 344
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 345 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 404
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 405 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 464
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcg-ac 489
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 465 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 524
Query: 490 ctcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaa 549
||| |||| | ||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 525 ttccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcag 584
Query: 550 cagtcctttcacccagtcaagaagcataaca-tcgtcatcatttgcaagacgagctagat 608
||| ||||||||||||||||| ||||| ||| ||||| ||||| |||||||| || || |
Sbjct: 585 cagccctttcacccagtcaagcagcatgacattcgtcgtcattcgcaagacgtgcgaggt 644
Query: 609 caaatgccctctgg-ccagtaataagctccagaagcatgatcccatagccaaaaacat 665
|||| ||||||||| ||||| |||||||||||||||||||| || || || |||||||
Sbjct: 645 caaacgccctctggtccagtgataagctccagaagcatgatgccgtaaccgaaaacat 702
>gb|BJ473565.1|BJ473565 BJ473565 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15f09 3', mRNA sequence
Length = 628
Score = 242 bits (122), Expect = 4e-062
Identities = 290/346 (83%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 283 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 342
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 343 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 402
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 403 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 462
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 463 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 522
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 523 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 582
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaa 596
|| ||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 583 agccctttcacccagtcaagcagcatgacatcgtcgtcattcgcaa 628
>gb|AV935185.1|AV935185 AV935185 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d08 3', mRNA sequence
Length = 630
Score = 232 bits (117), Expect = 4e-059
Identities = 292/349 (83%), Gaps = 1/349 (0%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 282 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 341
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 342 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 401
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 402 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 461
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||||| |
Sbjct: 462 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgc 521
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 522 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 581
Query: 551 agtcctttcacccagtcaagaagcataaca-tcgtcatcatttgcaaga 598
|| ||||||||||||||||| ||||| ||| ||||| ||||| ||||||
Sbjct: 582 agccctttcacccagtcaagcagcatgacattcgtcgtcattcgcaaga 630
>gb|BJ476116.1|BJ476116 BJ476116 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b06 3', mRNA sequence
Length = 577
Score = 228 bits (115), Expect = 6e-058
Identities = 280/335 (83%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 242 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 301
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 302 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 361
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 362 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 421
Query: 431 tccaggggggagccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacc 490
|||| || || ||||||||||| || || |||||||| || || |||||||| | |
Sbjct: 422 tccatcggtgacccctgcgtgcacagcagcgccacctggatcagcgcctccaccttgtgc 481
Query: 491 tcctcgtaggctttctgcagatctgggtccaccagcatctccaccttcttctccttcaac 550
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct: 482 tccacgtacacgctctgcaggtccgggtccaccagcatctccaccttcttctctttcagc 541
Query: 551 agtcctttcacccagtcaagaagcataacatcgtc 585
|| ||||||||||||||||| ||||| ||||||||
Sbjct: 542 agccctttcacccagtcaagcagcatgacatcgtc 576
>gb|BG366406.1|BG366406 HVSMEi0006P01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006P01f, mRNA sequence
Length = 832
Score = 212 bits (107), Expect = 4e-053
Identities = 206/239 (86%)
Strand = Plus / Minus
Query: 660 aaacatcagtcttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaa 719
|||||||||| |||||| | |||| ||||| ||||| ||||||| |||||||||| |
Sbjct: 239 aaacatcagtattctcacagcacttcccggtgcataggacctcgggaccaatgtgcccga 180
Query: 720 ttgttccacgaacagctgttgtgacatgggtatccttgtagtccataagcttggcaagcc 779
| |||||||| |||||||| || ||||| || ||||||||||||||||||||||| || |
Sbjct: 179 tcgttccacgcacagctgtggttacatgagtgtccttgtagtccataagcttggccagtc 120
Query: 780 cgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttgacat 839
| || || |||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct: 119 caaagtcgcccacaaccgcctcaaagtcttcatccaagagaatgtttgcagctttgacat 60
Query: 840 cccgatggatgattttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagat 898
| ||||| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 59 cacgatgaatgatcttgggatcacagtgatcatgcaagtaagacagtcctctggcagat 1
>gb|BU985927.1|BU985927 HF09B02r HF Hordeum vulgare subsp. vulgare cDNA clone HF09B02
5-PRIME, mRNA sequence
Length = 518
Score = 212 bits (107), Expect = 4e-053
Identities = 383/475 (80%)
Strand = Plus / Minus
Query: 567 caagaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccctctggccag 626
|||| ||||| |||||||| ||||| ||||| ||||| |||||||| || | ||| || |
Sbjct: 518 caagtagcatgacatcgtcgtcattggcaagccgagcaagatcaaaagcacgctgtcctg 459
Query: 627 taataagctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgc 686
|||||||||||| |||||| || ||||| || || |||||||| ||||| || || || |
Sbjct: 458 taataagctccaaaagcataattccataaccgaatacatcagttttctctgaggattttc 399
Query: 687 cggtagataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacat 746
| || || || || || || || || ||||||||||||||||| ||||| ||||| ||||
Sbjct: 398 ctgttgaaagatattctggtgcgatatgcccaattgttccacgcacagcagttgttacat 339
Query: 747 gggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcgaagt 806
||||||||||||| ||||| || ||||| | || ||||| ||||| || || || ||||
Sbjct: 338 gggtatccttgtaatccattagtttggccaaaccaaaatcccccactacagcttcaaagt 279
Query: 807 cctcatccaaaagaatatttgcagctttgacatcccgatggatgattttgggatcgcagt 866
| ||||| || | ||||||||||||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 278 cttcatctaataaaatatttgcagctttcacatcacgatggatgatctttggatcacagt 219
Query: 867 gatcatgcaagtaagaaagtcctcttgcagatcccagtgcaatccgtcttcttggttccc 926
||||||| || || || || || || ||||| |||| |||||| | |||||| | || ||
Sbjct: 218 gatcatgtaaataggagaggcccctggcagaacccaatgcaattcttcttctcgtttgcc 159
Query: 927 agctaagaggtggctcagatggctgccgctctcgtaaacgtgatgccacactcccgttag 986
| || || || |||| |||| || |||| || ||||||||| ||||| |||||||
Sbjct: 158 aatccagtggcggttcagctggccctcgttctcttagacgtgatgcaacacttccgttag 99
Query: 987 ccatgtatgggtagactaacaacctttcagtaggtgtcatgcagaaaccacgaag 1041
||||||||||||| || | ||||||||| || |||||||| ||||| ||||||||
Sbjct: 98 ccatgtatgggtacacaagcaacctttctgttggtgtcatacagaatccacgaag 44
>gb|AJ434488.1|AJ434488 AJ434488 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073F03F1, mRNA sequence
Length = 477
Score = 149 bits (75), Expect = 4e-034
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 254 cttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtcattg 313
|||||||| ||||| ||||| || || ||||| || ||||| || || |||||||| |||
Sbjct: 234 cttgggccagacagttccactgcgcggaggttatatgtggagtcaacaatccagtcgttg 175
Query: 314 cggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcccaa 373
|| || || ||| ||| ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 174 cgaagaggagccagctctgcctcctgcctgaccacctccaccttctgccattcctcccat 115
Query: 374 cgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacggtcc 433
| |||||||| ||||||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 114 ctctctgccaagccgtcaccttccagcatcctcaccacctctgacatcttggggcgctcc 55
Query: 434 aggggggagccctgcgtgcagaggagtgccacctg 468
| || ||||||||||||||||| || ||||||||
Sbjct: 54 actggtgagccctgcgtgcagagcagcgccacctg 20
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 168 agctacctttcatatacacaagcagcaattagactgaat 206
||||||||||||||| ||||| || ||||||| ||||||
Sbjct: 323 agctacctttcatattcacaaacaacaattaggctgaat 285
>gb|AV927168.1|AV927168 AV927168 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd0c01 3', mRNA sequence
Length = 516
Score = 143 bits (72), Expect = 3e-032
Identities = 156/184 (84%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 286 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 345
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 346 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 405
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccacctccgacatctttggacgg 430
|| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct: 406 cagcgctccgccagcccgtcgccctccagcatcctcaccacctccgacatcttgggccgg 465
Query: 431 tcca 434
||||
Sbjct: 466 tcca 469
>gb|BG414353.2|BG414353 HVSMEk0001M01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001M01f, mRNA sequence
Length = 566
Score = 139 bits (70), Expect = 4e-031
Identities = 267/330 (80%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 347 acctctactttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctc 406
|||||||| || ||||| |||||||| | ||| || || || || ||||||||||||||
Sbjct: 510 acctctaccttttgccactcgtcccatctctccgcgagaccatcgccttcgagcatcctt 451
Query: 407 accacctccgacatctttggacggtccaggggggagccctgcgtgcagaggagtgccacc 466
||||| ||||||||||| || || |||| |||||||||||| ||||| ||||| || |||
Sbjct: 450 accacttccgacatcttagggcgctccatgggggagccctgtgtgcaaaggagcgcaacc 391
Query: 467 tgaataaggctctccacctcgacctcctcgtaggctttctgcagatctgggtccaccagc 526
|| || || |||||||| || || |||| |||| || ||||| ||||||| |
Sbjct: 390 tggatcagcgattccacctcaacatcaatgtagttggtctgtaggtctggatccaccaac 331
Query: 527 atctccac-cttcttctccttcaacagtcctttcacccagtcaagaagcataacatcgtc 585
||||||| ||||| |||||| | || |||||||||||||||||| ||||| ||||||||
Sbjct: 330 atctccagtcttct-ctccttgagcaatcctttcacccagtcaagtagcatgacatcgtc 272
Query: 586 atcatttgcaagacgagctagatcaaatgccctctggccagtaataagctccagaagcat 645
||||| ||||| ||||| |||||||| || | ||| || ||||||||||||| ||||||
Sbjct: 271 gtcattggcaagccgagcaagatcaaaagcacgctgtcctgtaataagctccaaaagcat 212
Query: 646 gatcccatagccaaaaacatcagtcttctc 675
|| ||||| || || |||||||| |||||
Sbjct: 211 aattccataaccgaatacatcagttttctc 182
Score = 111 bits (56), Expect = 1e-022
Identities = 119/140 (85%)
Strand = Plus / Minus
Query: 713 tgcccaattgttccacgaacagctgttgtgacatgggtatccttgtagtccataagcttg 772
||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct: 144 tgcccaattgttccacgcacagcagttgttacatgggtatccttgtaatccattagtttg 85
Query: 773 gcaagcccgaaatcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagct 832
|| | || ||||| ||||| || || || ||||| ||||| || | |||||||||||||
Sbjct: 84 gccaaaccaaaatcccccactacagcttcaaagtcttcatctaataaaatatttgcagct 25
Query: 833 ttgacatcccgatggatgat 852
|| ||||| |||||||||||
Sbjct: 24 ttcacatcacgatggatgat 5
>gb|BQ660706.1|BQ660706 HI05A18u HI Hordeum vulgare subsp. vulgare cDNA clone HI05A18
3-PRIME, mRNA sequence
Length = 528
Score = 113 bits (57), Expect = 2e-023
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 310
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 368 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 427
Query: 311 ttgcggagcggtgccgactcagcctcctgcctcaccacctctactttctgccattcgtcc 370
||| | |||| ||| ||| |||||||||| |||||||| || |||||||| || |||
Sbjct: 428 ttgtgtcgcggagccagctccgcctcctgccggaccacctccaccttctgccactcctcc 487
Query: 371 caacgctctgccagcccgtcaccttcgagcatcctcaccac 411
|| ||||| ||||||||||| || || ||||||||||||||
Sbjct: 488 cagcgctccgccagcccgtcgccctccagcatcctcaccac 528
>gb|CA031584.1|CA031584 HX10G21r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G21
5-PRIME, mRNA sequence
Length = 613
Score = 95.6 bits (48), Expect = 6e-018
Identities = 198/248 (79%)
Strand = Plus / Minus
Query: 1733 ccagagaagttgttcatatacagatccaaactgaccaggttagtcaggttccccagttca 1792
|||| ||||||||| | |||| |||||||||||||| || || ||||| || |||||
Sbjct: 547 ccagtgaagttgtttaagtacaaatccaaactgaccaaatttgtgaggtttccaagttcg 488
Query: 1793 gggggtattgtcccacttatgttgttgctgtaaagctccaaatattggagatttttcagc 1852
|||||||| ||||| ||||| || ||||| ||||||| ||||| | ||| | |||
Sbjct: 487 ctaggtattgtgccactgatgttattactgtagagctccaggtattgcaagtttcttagc 428
Query: 1853 tggccaagttgtggcactagaacgccagataattgtgcatttccaaggtcaactctgata 1912
|| ||||| |||||||| | | ||| ||||| ||||||||||| ||||||||||||
Sbjct: 427 tgaccaagctgtggcaccaaagtaccaaataatgcagcatttccaagatcaactctgata 368
Query: 1913 acactgttatcgttgttacacgtaacatggaaccatgtacatggattaacaagagtggga 1972
|| ||||| |||||||| || |||||||| ||||| || || ||||| || ||||| |||
Sbjct: 367 acgctgttgtcgttgttgcaagtaacatgaaaccaagtgcacggattgaccagagttgga 308
Query: 1973 tcccaact 1980
||||||||
Sbjct: 307 tcccaact 300
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1673 ttgttgttaagacgtaggaaacgcagcttcactagattcccca 1715
|||||||||||||| ||||| || ||||||| ||| |||||||
Sbjct: 607 ttgttgttaagacgcaggaatcgtagcttcaataggttcccca 565
>gb|BF255566.1|BF255566 HVSMEf0007D09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0007D09f, mRNA sequence
Length = 912
Score = 87.7 bits (44), Expect = 1e-015
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1889 gcatttccaaggtcaactctgataacactgttatcgttgttacacgtaacatggaaccat 1948
||||||||||| |||||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct: 285 gcatttccaagatcaactctgataacgctgttgtcgttgttgcaagtaacatgaaaccaa 226
Query: 1949 gtacatggattaacaagagtgggatcccaact 1980
|| || ||||| || ||||| |||||||||||
Sbjct: 225 gtgcacggattgaccagagttggatcccaact 194
>gb|CB876196.1|CB876196 HX10J04w HX Hordeum vulgare subsp. vulgare cDNA clone HX10J04
3-PRIME, mRNA sequence
Length = 506
Score = 83.8 bits (42), Expect = 2e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 347 acctctactttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctc 406
|||||||| || ||||| |||||||| | ||| || || || || ||||||||||||||
Sbjct: 331 acctctaccttttgccactcgtcccatctctccgcgagaccatcgccttcgagcatcctt 390
Query: 407 accacctccgacatctttggacggtccaggggggagccctgcgtgcagaggagtgccacc 466
||||| ||||||||||| || || |||| |||||||||||| ||||| ||||| || |||
Sbjct: 391 accacttccgacatcttagggcgctccatgggggagccctgtgtgcaaaggagcgcaacc 450
Query: 467 tg 468
||
Sbjct: 451 tg 452
>gb|BI779151.2|BI779151 EBro01_SQ003_C13_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_C13 5', mRNA sequence
Length = 440
Score = 79.8 bits (40), Expect = 3e-013
Identities = 124/151 (82%), Gaps = 1/151 (0%)
Strand = Plus / Minus
Query: 257 gggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtcattgcgg 316
||||||||||||||||| || || |||||| | ||||| |||||||||||||| ||| |
Sbjct: 151 gggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgt 92
Query: 317 agcggtgccgact-cagcctcctgcctcaccacctctactttctgccattcgtcccaacg 375
|||| ||| || | |||||||||| |||||||| || || ||||| || ||||| ||
Sbjct: 91 cgcggagccagctcccgcctcctgccggaccacctccaccttntgccactcctcccagcg 32
Query: 376 ctctgccagcccgtcaccttcgagcatcctc 406
||| ||||||||||| || || |||||||||
Sbjct: 31 ctccgccagcccgtcgccctccagcatcctc 1
>gb|AV933439.2|AV933439 AV933439 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6o07 5', mRNA sequence
Length = 122
Score = 75.8 bits (38), Expect = 5e-012
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 743 acatgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcg 802
||||| || ||||||||||||||||||||||| || || || || |||||||| |||||
Sbjct: 122 acatgagtgtccttgtagtccataagcttggccagtccaaagtcgcccacaaccgcctca 63
Query: 803 aagtcctcatccaaaagaatatttgc 828
||||| |||||||| ||||| |||||
Sbjct: 62 aagtcttcatccaagagaatgtttgc 37
>gb|BF257905.3|BF257905 HVSMEf0014D03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014D03f, mRNA sequence
Length = 472
Score = 73.8 bits (37), Expect = 2e-011
Identities = 217/277 (78%)
Strand = Plus / Minus
Query: 263 gacagctccacggcacgaaggttgtacgtggaatcgacgatccagtcattgcggagcggt 322
||||||||||| || || |||||| | ||| | |||||||||||||| ||| | ||||
Sbjct: 277 gacagctccaccgctcggaggttgaaagtgtagtcgacgatccagtcgttgtgtcgcgga 218
Query: 323 gccgactcagcctcctgcctcaccacctctactttctgccattcgtcccaacgctctgcc 382
| | ||| || ||||| | |||||||| ||||| ||||| || ||||| || | |||
Sbjct: 217 gtcagctccgcttcctgacggaccacctccactttatgccactcctcccagcgattcgcc 158
Query: 383 agcccgtcaccttcgagcatcctcaccacctccgacatctttggacggtccaggggggag 442
|||| ||| || || ||||||||| |||||| |||||||| || ||||||| || ||
Sbjct: 157 agccagtcgccctccagcatcctcttcacctcagacatcttgggccggtccatcggtgac 98
Query: 443 ccctgcgtgcagaggagtgccacctgaataaggctctccacctcgacctcctcgtaggct 502
|| |||||||| || || |||||||| || || |||||||||| |||| |||| |
Sbjct: 97 ccatgcgtgcacagcagcgccacctggatcagcgcctccacctcgtgctccacgtacacg 38
Query: 503 ttctgcagatctgggtccaccagcatctccaccttct 539
| ||||| || |||||||||||||||||||||||||
Sbjct: 37 ctatgcaggtccgggtccaccagcatctccaccttct 1
>gb|BJ463304.1|BJ463304 BJ463304 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26n11 5', mRNA sequence
Length = 412
Score = 61.9 bits (31), Expect = 8e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtc 309
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 122 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 64
>gb|BJ467349.1|BJ467349 BJ467349 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26m24 3', mRNA sequence
Length = 454
Score = 61.9 bits (31), Expect = 8e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 251 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtc 309
||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 359 tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
>gb|BQ663999.1|BQ663999 HU04P13u HU Hordeum vulgare subsp. vulgare cDNA clone HU04P13
3-PRIME, mRNA sequence
Length = 496
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 358 ctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctccga 417
|||||| || ||||| ||||| ||||| || || ||||| |||||||| |||||||||||
Sbjct: 230 ctgccactcctcccaccgctccgccaggccttccccttccagcatccttaccacctccga 289
Query: 418 cat 420
|||
Sbjct: 290 cat 292
>gb|BQ768693.1|BQ768693 EBro08_SQ012_M08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_M08 5', mRNA sequence
Length = 694
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 638 agaagcatgatcccatagccaaaaacatcagtcttctcagaagactt 684
|||||||| || |||||||||||||||||||| ||||||| |||||
Sbjct: 204 agaagcattataccatagccaaaaacatcagttctctcagatgactt 158
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 359 tgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctccgac 418
||||| || ||||| ||||| ||||| || || ||||| |||||||| ||||||||||||
Sbjct: 483 tgccactcctcccaccgctccgccaggccttccccttccagcatccttaccacctccgac 424
Query: 419 at 420
||
Sbjct: 423 at 422
>gb|CA005680.1|CA005680 HU09E01u HU Hordeum vulgare subsp. vulgare cDNA clone HU09E01
3-PRIME, mRNA sequence
Length = 385
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 358 ctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcaccacctccga 417
|||||| || ||||| ||||| ||||| || || ||||| |||||||| |||||||||||
Sbjct: 321 ctgccactcctcccaccgctccgccaggccttccccttccagcatccttaccacctccga 380
Query: 418 cat 420
|||
Sbjct: 381 cat 383
>gb|BE214285.1|BE214285 HV_CEb0003A03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003A03f, mRNA sequence
Length = 754
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 243 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 184
Query: 1982 tg 1983
||
Sbjct: 183 tg 182
>gb|BE215595.1|BE215595 HV_CEb0007B02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007B02f, mRNA sequence
Length = 536
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 238 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 179
Query: 1982 tg 1983
||
Sbjct: 178 tg 177
>gb|BE519829.1|BE519829 HV_CEb0021G06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021G06f, mRNA sequence
Length = 718
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 233 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 174
Query: 1982 tg 1983
||
Sbjct: 173 tg 172
>gb|BE559430.1|BE559430 HV_CEb0024K12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024K12f, mRNA sequence
Length = 516
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 239 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 180
Query: 1982 tg 1983
||
Sbjct: 179 tg 178
>gb|BF065173.1|BF065173 HV_CEb0023M12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M12f, mRNA sequence
Length = 572
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 243 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 184
Query: 1982 tg 1983
||
Sbjct: 183 tg 182
>gb|BF065430.1|BF065430 HV_CEb0012G14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012G14f, mRNA sequence
Length = 610
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 255 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 196
Query: 1982 tg 1983
||
Sbjct: 195 tg 194
>gb|BF261998.2|BF261998 HV_CEa0002M15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002M15f, mRNA sequence
Length = 845
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 220 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 161
Query: 1982 tg 1983
||
Sbjct: 160 tg 159
>gb|BF262601.2|BF262601 HV_CEa0004H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004H01f, mRNA sequence
Length = 860
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 224 tcgttgttgcaggtcacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 165
Query: 1982 tg 1983
||
Sbjct: 164 tg 163
>gb|BF264160.2|BF264160 HV_CEa0008K24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008K24f, mRNA sequence
Length = 434
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 218 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 159
Query: 1982 tg 1983
||
Sbjct: 158 tg 157
>gb|BF264308.2|BF264308 HV_CEa0009B07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009B07f, mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 224 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 165
Query: 1982 tg 1983
||
Sbjct: 164 tg 163
>gb|BF264569.2|BF264569 HV_CEa0009M13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009M13f, mRNA sequence
Length = 791
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
|||||||| || || ||||||||||| || ||||| || ||||| ||||||||||| |||
Sbjct: 224 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 165
Query: 1982 tg 1983
||
Sbjct: 164 tg 163
>gb|BF266375.2|BF266375 HV_CEa0014P13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014P13f, mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1922 tcgttgttacacgtaacatggaaccatgtacatggattaacaagagtgggatcccaactc 1981
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Sbjct: 219 tcgttgttgcaggtgacatggaaccaagtgcatgggttgacaagggtgggatcccagctc 160
Query: 1982 tg 1983
||
Sbjct: 159 tg 158
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229,849
Number of Sequences: 312970
Number of extensions: 229849
Number of successful extensions: 62556
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62381
Number of HSP's gapped (non-prelim): 142
length of query: 2136
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2116
effective length of database: 168,875,139
effective search space: 357339794124
effective search space used: 357339794124
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)