BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230260.2.1
(863 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. v... 145 3e-033
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 88 6e-016
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 88 6e-016
gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke devel... 86 2e-015
gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedl... 86 2e-015
gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA li... 86 2e-015
gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA li... 86 2e-015
gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA li... 82 3e-014
gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA li... 82 3e-014
gb|CA007077.1|CA007077 HU06K19r HU Hordeum vulgare subsp. v... 82 3e-014
gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. v... 80 1e-013
gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. v... 80 1e-013
gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA li... 76 2e-012
gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. v... 74 8e-012
gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. v... 70 1e-010
gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA li... 66 2e-009
gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA li... 66 2e-009
gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA li... 66 2e-009
gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA li... 66 2e-009
gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA li... 66 2e-009
gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA li... 66 2e-009
gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow st... 66 2e-009
gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, n... 64 8e-009
gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. v... 64 8e-009
gb|BG369084.2|BG369084 HVSMEi0021K17f Hordeum vulgare 20 DA... 58 5e-007
gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA li... 54 8e-006
gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA li... 54 8e-006
gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 ... 52 3e-005
gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ476181.1|BJ476181 BJ476181 K. Sato unpublished cDNA li... 52 3e-005
gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. v... 52 3e-005
gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. v... 52 3e-005
gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA li... 46 0.002
gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, n... 42 0.030
gb|AL509655.1|AL509655 AL509655 Hordeum vulgare Barke devel... 40 0.12
gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedl... 40 0.12
gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. v... 40 0.12
gb|BI780492.2|BI780492 EBem08_SQ001_H15_R embryo, 40 DPA, n... 40 0.12
gb|BU976784.1|BU976784 HA10E23u HA Hordeum vulgare subsp. v... 40 0.12
gb|BU979448.1|BU979448 HA16D04r HA Hordeum vulgare subsp. v... 40 0.12
gb|BU999607.1|BU999607 HI15A17r HI Hordeum vulgare subsp. v... 40 0.12
gb|CA016583.1|CA016583 HV08A17u HV Hordeum vulgare subsp. v... 40 0.12
gb|CA032950.1|CA032950 HX14K22r HX Hordeum vulgare subsp. v... 40 0.12
gb|AL500853.1|AL500853 AL500853 Hordeum vulgare Barke roots... 38 0.47
gb|AL502319.1|AL502319 AL502319 Hordeum vulgare Barke roots... 38 0.47
gb|AL502802.1|AL502802 AL502802 Hordeum vulgare Barke roots... 38 0.47
gb|AL503027.1|AL503027 AL503027 Hordeum vulgare Barke roots... 38 0.47
gb|AL510160.1|AL510160 AL510160 Hordeum vulgare Barke devel... 38 0.47
gb|BF624508.1|BF624508 HVSMEa0016P10f Hordeum vulgare seedl... 38 0.47
gb|BG299845.1|BG299845 HVSMEa0022B16f Hordeum vulgare seedl... 38 0.47
gb|BG416638.2|BG416638 HVSMEk0013M24f Hordeum vulgare testa... 38 0.47
gb|BQ657126.1|BQ657126 HA09I20u HA Hordeum vulgare subsp. v... 38 0.47
gb|BQ657262.1|BQ657262 HA09A20u HA Hordeum vulgare subsp. v... 38 0.47
gb|BQ659645.1|BQ659645 HF01C24w HF Hordeum vulgare subsp. v... 38 0.47
gb|BQ659870.1|BQ659870 HF01P21w HF Hordeum vulgare subsp. v... 38 0.47
gb|BQ662314.1|BQ662314 HS01L11w HS Hordeum vulgare subsp. v... 38 0.47
gb|BQ662509.1|BQ662509 HS02L11u HS Hordeum vulgare subsp. v... 38 0.47
gb|BQ662763.1|BQ662763 HS04B05u HS Hordeum vulgare subsp. v... 38 0.47
gb|BQ662945.1|BQ662945 HS04O18u HS Hordeum vulgare subsp. v... 38 0.47
gb|BQ663082.1|BQ663082 HT01J03w HT Hordeum vulgare subsp. v... 38 0.47
gb|BQ663144.1|BQ663144 HT01P04w HT Hordeum vulgare subsp. v... 38 0.47
gb|BQ663526.1|BQ663526 HU03A03u HU Hordeum vulgare subsp. v... 38 0.47
gb|BQ663688.1|BQ663688 HU03J14u HU Hordeum vulgare subsp. v... 38 0.47
gb|BQ663766.1|BQ663766 HU03P14u HU Hordeum vulgare subsp. v... 38 0.47
gb|BQ663927.1|BQ663927 HU04K10u HU Hordeum vulgare subsp. v... 38 0.47
gb|BQ664291.1|BQ664291 HV02L13u HV Hordeum vulgare subsp. v... 38 0.47
gb|BQ664453.1|BQ664453 HV03G04u HV Hordeum vulgare subsp. v... 38 0.47
gb|BQ665356.1|BQ665356 HX03C14u HX Hordeum vulgare subsp. v... 38 0.47
gb|BQ665471.1|BQ665471 HX03L20u HX Hordeum vulgare subsp. v... 38 0.47
gb|BU969215.1|BU969215 HB10O07r BC Hordeum vulgare subsp. v... 38 0.47
gb|BU975450.1|BU975450 HB31C17r BC Hordeum vulgare subsp. v... 38 0.47
gb|BU975709.1|BU975709 HB32B04r BC Hordeum vulgare subsp. v... 38 0.47
gb|BU975742.1|BU975742 HB32C17r BC Hordeum vulgare subsp. v... 38 0.47
gb|BU977485.1|BU977485 HA11I03u HA Hordeum vulgare subsp. v... 38 0.47
gb|BU984122.1|BU984122 HF03A22r HF Hordeum vulgare subsp. v... 38 0.47
gb|BU986415.1|BU986415 HF11L24r HF Hordeum vulgare subsp. v... 38 0.47
gb|CA000586.1|CA000586 HS08C06u HS Hordeum vulgare subsp. v... 38 0.47
gb|CA005221.1|CA005221 HU11I20u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA005442.1|CA005442 HU10F05u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA005616.1|CA005616 HU09K09u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA005811.1|CA005811 HU08I24u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA005940.1|CA005940 HU08A14u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA006041.1|CA006041 HU05K18u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA006282.1|CA006282 HU14O10u HU Hordeum vulgare subsp. v... 38 0.47
gb|CA009853.1|CA009853 HT12G11u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010055.1|CA010055 HT11K15u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010190.1|CA010190 HT11E03u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010283.1|CA010283 HT10J04u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010475.1|CA010475 HT09O22u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010530.1|CA010530 HT09J06u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010618.1|CA010618 HT09D10u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010730.1|CA010730 HT08L22u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA010740.1|CA010740 HT08M15u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA011197.1|CA011197 HT06G06u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA011198.1|CA011198 HT06G08u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA011488.1|CA011488 HT05H20u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA011548.1|CA011548 HT05G08u HT Hordeum vulgare subsp. v... 38 0.47
gb|CA024338.1|CA024338 HZ49A14r HZ Hordeum vulgare subsp. v... 38 0.47
gb|CB859213.1|CB859213 HI09L16w HI Hordeum vulgare subsp. v... 38 0.47
gb|CB876315.1|CB876315 HX10O17w HX Hordeum vulgare subsp. v... 38 0.47
gb|CB880603.1|CB880603 HM07B09w HM Hordeum vulgare subsp. v... 38 0.47
gb|CV063744.1|CV063744 BNEL92g1 Barley EST endosperm librar... 38 0.47
>gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
5-PRIME, mRNA sequence
Length = 636
Score = 145 bits (73), Expect = 3e-033
Identities = 223/273 (81%)
Strand = Plus / Minus
Query: 591 gtatttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatg 650
|||||||||| || |||| ||| || ||||||||||| |||||||| ||||||||||
Sbjct: 385 gtatttactgtagactgcatcaaggggccaattaccaacgatgggcatatagttacaaca 326
Query: 651 tctagcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaagg 710
|| | ||||||||| |||||||||||||||||||| | ||||| | ||||| ||||||
Sbjct: 325 tccaacccagttttttctgcataagcaaaagcctcacgctctgcgagcgttttggaaagg 266
Query: 711 aaataccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaag 770
|||||||| |||||| |||||||| ||| | ||||||||||| || ||| |||
Sbjct: 265 aaataccaatcctcaccctttctgcagagatcctcgtctgaccagctgtcttcatcgaag 206
Query: 771 gcctcgcccttaggccagtcaggattattgaacacagccgccactgaagataccacaaca 830
| |||||||||||||| |||||||||| ||||||| || ||||||||||||| |||
Sbjct: 205 aatttgcccttaggccagttaggattattggacacagcagcaactgaagataccatgaca 146
Query: 831 actctcttcgctttggcctcatagcaagctttc 863
|||| ||| |||| ||||| ||||||||||||
Sbjct: 145 actcgcttaactttcgcctcgtagcaagctttc 113
Score = 73.8 bits (37), Expect = 8e-012
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 598 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 539
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 538 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 479
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || ||||||||||||||||| |||||
Sbjct: 478 tcggcaacatcacgaacatccactagatt 450
>gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G17
5-PRIME, mRNA sequence
Length = 622
Score = 87.7 bits (44), Expect = 6e-016
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 776 gcccttaggccagtcaggattattgaacacagccgccactgaagataccacaacaactct 835
|||||||||||||| |||||||||| ||||||| || ||||||||||||| |||||||
Sbjct: 555 gcccttaggccagttaggattattggacacagcagcaactgaagataccatgacaactcg 496
Query: 836 cttcgctttggcctcatagcaagctttc 863
||| |||| ||||| ||||||||||||
Sbjct: 495 cttaactttcgcctcgtagcaagctttc 468
>gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
5-PRIME, mRNA sequence
Length = 647
Score = 87.7 bits (44), Expect = 6e-016
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 776 gcccttaggccagtcaggattattgaacacagccgccactgaagataccacaacaactct 835
|||||||||||||| |||||||||| ||||||| || ||||||||||||| |||||||
Sbjct: 556 gcccttaggccagttaggattattggacacagcagcaactgaagataccatgacaactcg 497
Query: 836 cttcgctttggcctcatagcaagctttc 863
||| |||| ||||| ||||||||||||
Sbjct: 496 cttaactttcgcctcgtagcaagctttc 469
>gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04A23T 5',
mRNA sequence
Length = 619
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 576 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 517
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 516 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 457
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 456 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 397
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 396 ttgaacacagc 386
>gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022F12f, mRNA sequence
Length = 697
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 638 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 579
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 578 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 519
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 518 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 459
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 458 ttgaacacagc 448
>gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 5', mRNA sequence
Length = 593
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 265 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 206
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 205 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 146
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 145 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 86
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 85 ttgaacacagc 75
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 505 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 446
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 445 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 386
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 385 tcggcaacatcacggacatccactagatt 357
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 304 aggtccaccctagcttccgaagcttctc 331
||||||||||||||||| |||| |||||
Sbjct: 579 aggtccaccctagcttctgaagtttctc 552
>gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a13 3', mRNA sequence
Length = 767
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 616
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 617 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 676
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 677 ttgaacacagc 687
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 257 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 316
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 317 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 376
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 377 tcggcaacatcacggacatccactagatt 405
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 113 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 172
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 173 acaggcctgaaggtccaccctagcttctgaagtttctc 210
>gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 5', mRNA sequence
Length = 662
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 611 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 552
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 551 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 492
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 491 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 432
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 431 ttgaacacagc 421
>gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 5', mRNA sequence
Length = 663
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 629 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 570
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 569 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 510
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 509 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 450
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 449 ttgaacacagc 439
>gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34g17 5', mRNA sequence
Length = 647
Score = 85.7 bits (43), Expect = 2e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 432 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 373
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 372 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 313
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
||| | ||||||||||| || |||||||| | | |||||| ||||||| ||||||
Sbjct: 312 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 253
Query: 798 ttgaacacagc 808
|||||||||||
Sbjct: 252 ttgaacacagc 242
>gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 5', mRNA sequence
Length = 518
Score = 81.8 bits (41), Expect = 3e-014
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 656 cccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaata 715
||||||||| ||||||||||||||||||||| | ||||| ||||| ||||| |||||
Sbjct: 514 cccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaata 455
Query: 716 ccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctc 775
||| |||||| |||||||| ||| | ||||||||||| || |||||||| | |
Sbjct: 454 ccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaatacttt 395
Query: 776 gcccttaggccagtcaggattattgaacacagc 808
|||||| ||||||| |||||| |||||||||||
Sbjct: 394 gcccttgggccagttaggattgttgaacacagc 362
>gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 5', mRNA sequence
Length = 578
Score = 81.8 bits (41), Expect = 3e-014
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 656 cccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaata 715
||||||||| ||||||||||||||||||||| | ||||| ||||| ||||| |||||
Sbjct: 574 cccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaata 515
Query: 716 ccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctc 775
||| |||||| |||||||| ||| | ||||||||||| || |||||||| | |
Sbjct: 514 ccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaatacttt 455
Query: 776 gcccttaggccagtcaggattattgaacacagc 808
|||||| ||||||| |||||| |||||||||||
Sbjct: 454 gcccttgggccagttaggattgttgaacacagc 422
>gb|CA007077.1|CA007077 HU06K19r HU Hordeum vulgare subsp. vulgare cDNA clone HU06K19
5-PRIME, mRNA sequence
Length = 459
Score = 81.8 bits (41), Expect = 3e-014
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 656 cccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaata 715
||||||||| ||||||||||||||||||||| | ||||| ||||| ||||| |||||
Sbjct: 453 cccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaata 394
Query: 716 ccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctc 775
||| |||||| |||||||| ||| | ||||||||||| || |||||||| | |
Sbjct: 393 ccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaatacttt 334
Query: 776 gcccttaggccagtcaggattattgaacacagc 808
|||||| ||||||| |||||| |||||||||||
Sbjct: 333 gcccttgggccagttaggattgttgaacacagc 301
>gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
5-PRIME, mRNA sequence
Length = 633
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 591 gtatttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatg 650
|||||||||| || |||| ||| || ||||||||||| |||||||| ||||||||||
Sbjct: 112 gtatttactgtagactgcatcaaggggccaattaccaacgatgggcatatagttacaaca 53
Query: 651 tctagcccagttttggctgcataagcaaaagcctca 686
|| | ||||||||| ||||||||||||||||||||
Sbjct: 52 tccaacccagttttttctgcataagcaaaagcctca 17
Score = 73.8 bits (37), Expect = 8e-012
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 325 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 266
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 265 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 206
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || ||||||||||||||||| |||||
Sbjct: 205 tcggcaacatcacgaacatccactagatt 177
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 469 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 410
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 409 aaaggcctgaagatccaccctagcttctgaagtttctccg 370
>gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
3-PRIME, mRNA sequence
Length = 665
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 591 gtatttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatg 650
|||||||||| || |||| ||| || ||||||||||| |||||||| ||||||||||
Sbjct: 554 gtatttactgtagactgcatcaaggggccaattaccaacgatgggcatatagttacaaca 613
Query: 651 tctagcccagttttggctgcataagcaaaagcctca 686
|| | ||||||||| ||||||||||||||||||||
Sbjct: 614 tccaacccagttttttctgcataagcaaaagcctca 649
Score = 73.8 bits (37), Expect = 8e-012
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 341 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 400
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 401 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 460
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || ||||||||||||||||| |||||
Sbjct: 461 tcggcaacatcacgaacatccactagatt 489
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 197 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 256
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 257 aaaggcctgaagatccaccctagcttctgaagtttctccg 296
>gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o15 5', mRNA sequence
Length = 521
Score = 75.8 bits (38), Expect = 2e-012
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 656 cccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaata 715
||||||||| ||||||||||||||||||||| | ||||| ||||| ||||| |||||
Sbjct: 513 cccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaata 454
Query: 716 ccattcctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctc 775
||| |||||| |||||||| ||| | |||| |||||| || |||||||| | |
Sbjct: 453 ccaatcctcaccctttctgcacagatcctcgtctgnccagctgtcttcagtaaatacttt 394
Query: 776 gcccttaggccagtcaggattattgaacacagc 808
|||||| ||||||| |||||| |||||||||||
Sbjct: 393 gcccttgggccagttaggattgttgaacacagc 361
>gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
3-PRIME, mRNA sequence
Length = 505
Score = 73.8 bits (37), Expect = 8e-012
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 285 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 344
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 345 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 404
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || ||||||||||||||||| |||||
Sbjct: 405 tcggcaacatcacgaacatccactagatt 433
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 141 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 200
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 201 aaaggcctgaagatccaccctagcttctgaagtttctccg 240
>gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
3-PRIME, mRNA sequence
Length = 565
Score = 69.9 bits (35), Expect = 1e-010
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 420 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 479
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 480 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 539
Query: 498 ccagcgacatcacgaacatccac 520
| || |||||||||||||||||
Sbjct: 540 tcggcaacatcacgaacatccac 562
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 276 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 335
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 336 aaaggcctgaagatccaccctagcttctgaagtttctccg 375
>gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 3', mRNA sequence
Length = 630
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 227 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 286
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 287 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 346
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 347 tcggcaacatcacggacatccactagatt 375
Score = 63.9 bits (32), Expect = 8e-009
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 467 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 526
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 527 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 586
Query: 738 tattccccatctgaccagctatcctcagtaaa 769
||| | ||||||||||| || ||||||||
Sbjct: 587 agatcctcgtctgaccagctgtcttcagtaaa 618
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 83 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 142
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 143 acaggcctgaaggtccaccctagcttctgaagtttctc 180
>gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 3', mRNA sequence
Length = 751
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 260 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 319
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 320 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 379
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 380 tcggcaacatcacggacatccactagatt 408
Score = 63.9 bits (32), Expect = 8e-009
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 500 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 559
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctca 725
||||||||| | ||||| ||||| ||||| |||||||| ||||||
Sbjct: 560 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctca 607
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 116 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 175
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 176 acaggcctgaaggtccaccctagcttctgaagtttctc 213
>gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 3', mRNA sequence
Length = 661
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 258 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 317
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 318 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 377
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 378 tcggcaacatcacggacatccactagatt 406
Score = 63.9 bits (32), Expect = 8e-009
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 498 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 557
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 558 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 617
Query: 738 tattccccatctgaccagctatcctcagtaaa 769
||| | ||||||||||| || ||||||||
Sbjct: 618 agatcctcgtctgaccagctgtcttcagtaaa 649
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 114 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 173
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 174 acaggcctgaaggtccaccctagcttctgaagtttctc 211
>gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 3', mRNA sequence
Length = 662
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 257 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 316
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 317 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 376
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 377 tcggcaacatcacggacatccactagatt 405
Score = 63.9 bits (32), Expect = 8e-009
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 616
Query: 738 tattccccatctgaccagctatcctcagtaaa 769
||| | ||||||||||| || ||||||||
Sbjct: 617 agatcctcgtctgaccagctgtcttcagtaaa 648
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 113 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 172
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 173 acaggcctgaaggtccaccctagcttctgaagtttctc 210
>gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 3', mRNA sequence
Length = 663
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 257 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 316
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 317 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 376
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 377 tcggcaacatcacggacatccactagatt 405
Score = 63.9 bits (32), Expect = 8e-009
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 616
Query: 738 tattccccatctgaccagctatcctcagtaaa 769
||| | ||||||||||| || ||||||||
Sbjct: 617 agatcctcgtctgaccagctgtcttcagtaaa 648
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 113 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 172
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 173 acaggcctgaaggtccaccctagcttctgaagtttctc 210
>gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 3', mRNA sequence
Length = 681
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| |
Sbjct: 275 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 334
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|| |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| |||
Sbjct: 335 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 394
Query: 498 ccagcgacatcacgaacatccacaagatt 526
| || |||||||| |||||||| |||||
Sbjct: 395 tcggcaacatcacggacatccactagatt 423
Score = 63.9 bits (32), Expect = 8e-009
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 515 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 574
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||||||
Sbjct: 575 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 634
Query: 738 tattccccatctgaccagctatcctcagtaaa 769
||| | ||||||||||| || ||||||||
Sbjct: 635 agatcctcgtctgaccagctgtcttcagtaaa 666
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | |||
Sbjct: 131 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 190
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
| ||||| ||||||||||||||||| |||| |||||
Sbjct: 191 acaggcctgaaggtccaccctagcttctgaagtttctc 228
>gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C10 5', mRNA sequence
Length = 213
Score = 65.9 bits (33), Expect = 2e-009
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 159 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 100
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | ||||| || ||||| ||||| |||
Sbjct: 99 actgaactgcagatgtaccgtccagacgcctctggtttttcatatgccaatagaagagca 40
Query: 498 ccagcgacatcacgaacatcc 518
| || |||||||||||||||
Sbjct: 39 tcggcaacatcacgaacatcc 19
>gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_M19 5', mRNA sequence
Length = 387
Score = 63.9 bits (32), Expect = 8e-009
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 129 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 70
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctca 725
||||||||| | ||||| ||||| ||||| |||||||| ||||||
Sbjct: 69 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctca 22
>gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. vulgare cDNA clone HX10J08
3-PRIME, mRNA sequence
Length = 562
Score = 63.9 bits (32), Expect = 8e-009
Identities = 115/143 (80%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 420 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 479
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
||||||||||| ||| ||||| || |||| | |||| || ||||| ||||| |||
Sbjct: 480 actgaactgcagatgtaccgtccagacgcctctggtntttcatatgccaatagaagagca 539
Query: 498 ccagcgacatcacgaacatccac 520
| || |||||||||||||||||
Sbjct: 540 tcggcaacatcacgaacatccac 562
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 276 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 335
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 336 aaaggcctgaagatccaccctagcttctgaagtttctccg 375
>gb|BG369084.2|BG369084 HVSMEi0021K17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021K17f, mRNA sequence
Length = 592
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 638 aatagttacaatgtctagcccagttttggctgcataagcaaaagcctca 686
||||||||||| || | ||||||||| |||||||||||||||||||||
Sbjct: 584 aatagttacaacatccatcccagttttcgctgcataagcaaaagcctca 536
>gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j13 5', mRNA sequence
Length = 430
Score = 54.0 bits (27), Expect = 8e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 133 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 74
Query: 438 ggtgaactgcagaggtatcgtcc 460
||||||||||| ||| |||||
Sbjct: 73 actgaactgcagatgtaccgtcc 51
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 277 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 218
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 217 aaaggcctgaagatccaccctagcttctgaagtttctccg 178
>gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j13 3', mRNA sequence
Length = 411
Score = 54.0 bits (27), Expect = 8e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
||||||||||| |||||| ||||||||||| | ||| |||||||||||| ||| || |
Sbjct: 278 taagtgtatgtcggatataaggtcttcagtacgcttatcatatcagagacttttactggt 337
Query: 438 ggtgaactgcagaggtatcgtcc 460
||||||||||| ||| |||||
Sbjct: 338 actgaactgcagatgtaccgtcc 360
Score = 40.1 bits (20), Expect = 0.12
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| |||| | ||| |||| |||||| | |||
Sbjct: 134 gctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtcttctct 193
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctccg 333
| ||||| || |||||||||||||| |||| |||||||
Sbjct: 194 aaaggcctgaagatccaccctagcttctgaagtttctccg 233
>gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100H17f, mRNA sequence
Length = 505
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 806
||||||||||| || |||||||| | | |||||| ||||||| |||||| |||||||||
Sbjct: 452 tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 393
Query: 807 gc 808
||
Sbjct: 392 gc 391
>gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 5', mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 806
||||||||||| || |||||||| | | |||||| ||||||| |||||| |||||||||
Sbjct: 474 tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 415
Query: 807 gc 808
||
Sbjct: 414 gc 413
>gb|BJ476181.1|BJ476181 BJ476181 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32j11 3', mRNA sequence
Length = 160
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 806
||||||||||| || |||||||| | | |||||| ||||||| |||||| |||||||||
Sbjct: 44 tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 103
Query: 807 gc 808
||
Sbjct: 104 gc 105
>gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. vulgare cDNA clone HU08J12
5-PRIME, mRNA sequence
Length = 511
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 806
||||||||||| || |||||||| | | |||||| ||||||| |||||| |||||||||
Sbjct: 449 tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 390
Query: 807 gc 808
||
Sbjct: 389 gc 388
>gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46L02
5-PRIME, mRNA sequence
Length = 421
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 747 tctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggattattgaacaca 806
||||||||||| || |||||||| | | |||||| ||||||| |||||| |||||||||
Sbjct: 413 tctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaacaca 354
Query: 807 gc 808
||
Sbjct: 353 gc 352
>gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17k13 3', mRNA sequence
Length = 292
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtt 412
|||||||||||||||||| ||||||||| |||||
Sbjct: 199 taagtgtatgttggatataaggtcttcagaatgtt 233
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 304 aggtccaccctagcttccgaagcttctc 331
||||||||||||||||| |||| |||||
Sbjct: 125 aggtccaccctagcttctgaagtttctc 152
>gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_O04 5', mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.030
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 776 gcccttaggccagtcaggattattgaacacagc 808
|||||| ||||||| |||||| |||||||||||
Sbjct: 417 gcccttgggccagttaggattgttgaacacagc 385
>gb|AL509655.1|AL509655 AL509655 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H17u 3',
mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 122 agtagtagcagcagcagcag 103
>gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017O20f, mRNA sequence
Length = 934
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 304 aggtccaccctagcttccgaagcttctc 331
||||||||||||||||| |||| |||||
Sbjct: 224 aggtccaccctagcttctgaagtttctc 251
>gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
3-PRIME, mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 88 agtagtagcagcagcagcag 69
>gb|BI780492.2|BI780492 EBem08_SQ001_H15_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ001_H15 5', mRNA sequence
Length = 352
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 196 tagcagcagcagcagccaaa 215
||||||||||||||||||||
Sbjct: 106 tagcagcagcagcagccaaa 87
>gb|BU976784.1|BU976784 HA10E23u HA Hordeum vulgare subsp. vulgare cDNA clone HA10E23
3-PRIME, mRNA sequence
Length = 523
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 aaaagtagtagcagcagcagcagc 211
||||||||||| ||||||||||||
Sbjct: 75 aaaagtagtagtagcagcagcagc 52
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 69 agtagtagcagcagcagcag 50
>gb|BU979448.1|BU979448 HA16D04r HA Hordeum vulgare subsp. vulgare cDNA clone HA16D04
5-PRIME, mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 598 agtagtagcagcagcagcag 617
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 aaaagtagtagcagcagcagcagc 211
||||||||||| ||||||||||||
Sbjct: 592 aaaagtagtagtagcagcagcagc 615
>gb|BU999607.1|BU999607 HI15A17r HI Hordeum vulgare subsp. vulgare cDNA clone HI15A17
5-PRIME, mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 196 tagcagcagcagcagccaaa 215
||||||||||||||||||||
Sbjct: 193 tagcagcagcagcagccaaa 174
>gb|CA016583.1|CA016583 HV08A17u HV Hordeum vulgare subsp. vulgare cDNA clone HV08A17
3-PRIME, mRNA sequence
Length = 241
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 88 agtagtagcagcagcagcag 69
>gb|CA032950.1|CA032950 HX14K22r HX Hordeum vulgare subsp. vulgare cDNA clone HX14K22
5-PRIME, mRNA sequence
Length = 240
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 86 agtagtagcagcagcagcag 67
>gb|AL500853.1|AL500853 AL500853 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02C06u 3', mRNA sequence
Length = 555
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 193 tagtagcagcagcagcagc 211
|||||||||||||||||||
Sbjct: 67 tagtagcagcagcagcagc 85
>gb|AL502319.1|AL502319 AL502319 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D04u 3', mRNA sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 193 tagtagcagcagcagcagc 211
|||||||||||||||||||
Sbjct: 69 tagtagcagcagcagcagc 87
>gb|AL502802.1|AL502802 AL502802 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08M07u 3', mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 193 tagtagcagcagcagcagc 211
|||||||||||||||||||
Sbjct: 114 tagtagcagcagcagcagc 132
>gb|AL503027.1|AL503027 AL503027 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H20u 3', mRNA sequence
Length = 513
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 193 tagtagcagcagcagcagc 211
|||||||||||||||||||
Sbjct: 69 tagtagcagcagcagcagc 87
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,177
Number of Sequences: 312970
Number of extensions: 99177
Number of successful extensions: 35678
Number of sequences better than 0.5: 105
Number of HSP's better than 0.5 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35295
Number of HSP's gapped (non-prelim): 298
length of query: 863
length of database: 175,134,539
effective HSP length: 19
effective length of query: 844
effective length of database: 169,188,109
effective search space: 142794763996
effective search space used: 142794763996
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)