BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204272.2.1
(739 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA li... 202 1e-050
gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA li... 202 1e-050
gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA li... 202 1e-050
gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA li... 202 1e-050
gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare s... 202 1e-050
gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA li... 202 1e-050
gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA li... 202 1e-050
gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA li... 202 1e-050
gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike... 170 4e-041
gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, n... 167 6e-040
gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA li... 163 1e-038
gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. v... 141 4e-032
gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA li... 137 6e-031
gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedl... 121 3e-026
gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedl... 115 2e-024
gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA li... 105 2e-021
gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. v... 103 8e-021
gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. v... 98 5e-019
gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. v... 98 5e-019
gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, n... 96 2e-018
gb|BE437927.1|BE437927 SFR009.A04F990512 ITEC SFR Barley Le... 90 1e-016
gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA li... 90 1e-016
gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. v... 90 1e-016
gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. v... 78 5e-013
gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiol... 74 7e-012
gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiol... 74 7e-012
gb|BF267850.2|BF267850 HV_CEa0019B08f Hordeum vulgare seedl... 74 7e-012
gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hyd... 74 7e-012
gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subs... 74 7e-012
gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiol... 72 3e-011
gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA li... 58 4e-007
gb|AL508926.1|AL508926 AL508926 Hordeum vulgare Barke devel... 48 4e-004
gb|BQ460225.1|BQ460225 HA06N22r HA Hordeum vulgare subsp. v... 48 4e-004
gb|BU970673.1|BU970673 HB15F13r BC Hordeum vulgare subsp. v... 48 4e-004
gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. v... 48 4e-004
gb|CA027928.1|CA027928 HZ60H12r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CA028388.1|CA028388 HZ61N07r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CA025468.1|CA025468 HZ52E03r HZ Hordeum vulgare subsp. v... 44 0.006
>gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 3', mRNA sequence
Length = 656
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 294 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 352
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 353 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 412
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 413 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 472
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 473 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 532
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 533 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 592
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 593 tccgtattgttgccaggagttgaagacgatagcatctggattccac 638
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 179 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 238
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 239 ggcagcgagcgtgacctgcatctg 262
>gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 3', mRNA sequence
Length = 642
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 280 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 338
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 339 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 398
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 399 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 458
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 459 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 518
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 519 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 578
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 579 tccgtattgttgccaggagttgaagacgatagcatctggattccac 624
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 165 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 224
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 225 ggcagcgagcgtgacctgcatctg 248
>gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 3', mRNA sequence
Length = 646
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 284 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 342
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 343 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 402
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 403 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 462
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 463 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 522
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 523 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 582
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 583 tccgtattgttgccaggagttgaagacgatagcatctggattccac 628
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 169 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 228
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 229 ggcagcgagcgtgacctgcatctg 252
>gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 3', mRNA sequence
Length = 654
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 293 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 351
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 352 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 411
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 412 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 471
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 472 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 531
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 532 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 591
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 592 tccgtattgttgccaggagttgaagacgatagcatctggattccac 637
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 178 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 237
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 238 ggcagcgagcgtgacctgcatctg 261
>gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111G07_T3.ab1 similar to (AC011708) putative
alpha-L-arabinofuranosidase [Arabidopsis thaliana], mRNA
sequence
Length = 924
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 667 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 609
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 608 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 549
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 548 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 489
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 488 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 429
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 428 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 369
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 368 tccgtattgttgccaggagttgaagacgatagcatctggattccac 323
Score = 81.8 bits (41), Expect = 3e-014
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||| ||| |||||||||
Sbjct: 262 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaataaggcttcctcta 203
Query: 715 cctgcatca 723
|||||||||
Sbjct: 202 cctgcatca 194
Score = 65.9 bits (33), Expect = 2e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 782 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgagnagaaggagtg 723
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 722 ggcagcgagcgtgacctgcatctg 699
>gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 5', mRNA sequence
Length = 712
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 521 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 463
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 462 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 403
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 402 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 343
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 342 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 283
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 282 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 223
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 222 tccgtattgttgccaggagttgaagacgatagcatctggattccac 177
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 116 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 57
Query: 715 cctgcatca 723
|||||||||
Sbjct: 56 cctgcatca 48
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 636 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 577
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 576 ggcagcgagcgtgacctgcatctg 553
>gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 3', mRNA sequence
Length = 704
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 275 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 333
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 334 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 393
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 394 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 453
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 454 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 513
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 514 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 573
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 574 tccgtattgttgccaggagttgaagacgatagcatctggattccac 619
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 160 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 219
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 220 ggcagcgagcgtgacctgcatctg 243
Score = 38.2 bits (19), Expect = 0.40
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 655 ttcttctccagtccagtaaggaa 677
||||||||||| |||||||||||
Sbjct: 680 ttcttctccagcccagtaaggaa 702
>gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 3', mRNA sequence
Length = 715
Score = 202 bits (102), Expect = 1e-050
Identities = 287/346 (82%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 301 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 359
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 360 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 419
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 420 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 479
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 480 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 539
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagt 605
|||||| | ||| ||||||||||| |||||||||| | |||||||||||||||| |||||
Sbjct: 540 tggatgaatcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagt 599
Query: 606 gccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 600 tccgtattgttgccaggagttgaagacgatagcatctggattccac 645
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 186 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 245
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 246 ggcagcgagcgtgacctgcatctg 269
>gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010F06f, mRNA sequence
Length = 817
Score = 170 bits (86), Expect = 4e-041
Identities = 179/210 (85%)
Strand = Plus / Minus
Query: 442 gacccgaagtttatgacctttactcttaggaagctgttctcggagtcctgccaggtaatc 501
||||||||||| | |||||||||| |||||| | ||| |||| ||||||||||| ||
Sbjct: 515 gacccgaagttcacatcctttactctcaggaagttattcccggaatcctgccaggtgata 456
Query: 502 gcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatggaacatagca 561
||||| ||||| || ||||| ||||||||||| |||||||| ||||||| | ||| |||
Sbjct: 455 gcagatgctgctagagaaccagagtagctggaactgattgtaattggatgaatcatggca 396
Query: 562 ccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccag 621
|||||||| |||||||||| | |||||||||||||||| ||||| ||||| || ||||||
Sbjct: 395 ccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgttgccag 336
Query: 622 gagttgaagacgattgcgtctgggttccac 651
|||||||||||||| || ||||| ||||||
Sbjct: 335 gagttgaagacgatagcatctggattccac 306
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 245 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 186
Query: 715 cctgcatca 723
|||||||||
Sbjct: 185 cctgcatca 177
>gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_K02 5', mRNA sequence
Length = 479
Score = 167 bits (84), Expect = 6e-040
Identities = 282/348 (81%)
Strand = Plus / Minus
Query: 304 accggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtg 363
||||||||||||||| ||||||| ||| ||||| || ||||| ||| | | ||||||
Sbjct: 451 accggcacaaccttgtttgggttagcgaaagagttctcgtccattacaccgccagatgtg 392
Query: 364 agaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagatt 423
||||| || ||||| ||||| || || ||||| ||| ||||||||||| | | |||||
Sbjct: 391 agaacggtcgcggtggatccgagcgcattgatgctgccctggagcccagtcgccgagatg 332
Query: 424 gtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcg 483
|| ||| ||| ||||||| |||||| || | | ||| ||||| |||||||||||||||
Sbjct: 331 gtgaggcccacggcatctggcccgaaattcacaatcttcactctcaggaagctgttctcg 272
Query: 484 gagtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtc 543
|| ||||| || |||||||| ||||| || |||| ||| |||| || |||| |
Sbjct: 271 tcatcatgccacgtgatcgcagatgctgccagcaaaccagagcagcttgaactgagactg 212
Query: 544 gttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactggga 603
| ||||||| | ||||||| || || || ||||||||||||||||||||||||||||||
Sbjct: 211 atgggatggaccgtagcaccgcttgattctcggaaaagcgtctgcatccagtaactggga 152
Query: 604 gtgccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
|| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 151 gttccgtattgctgccaggagttgaagacgatagcgtctgggttccac 104
Score = 67.9 bits (34), Expect = 4e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 652 ctattcttctccagtccagtaaggaaagcagcttctgccaatgaag 697
|||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 46 ctattcttctccagcccagtaaggaaagcggcctctgccaatgaag 1
>gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 5', mRNA sequence
Length = 591
Score = 163 bits (82), Expect = 1e-038
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 462 tactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtgaacc 521
|||||| |||||| | ||| |||| ||||||||||| || ||||| ||||| || |||||
Sbjct: 591 tactctcaggaagttattcccggaatcctgccaggtgatagcagatgctgctagagaacc 532
Query: 522 tgagtagctggagctgattgtcgttggatggaacatagcaccactagactcgcggaaaag 581
||||||||||| |||||||| ||||||| | ||| ||||||||||| ||||||||||
Sbjct: 531 agagtagctggaactgattgtaattggatgaatcatggcaccactagattcgcggaaaaa 472
Query: 582 cgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacgattgcgtc 641
| |||||||||||||||| ||||| ||||| || |||||||||||||||||||| || ||
Sbjct: 471 cttctgcatccagtaactaggagttccgtattgttgccaggagttgaagacgatagcatc 412
Query: 642 tgggttccac 651
||| ||||||
Sbjct: 411 tggattccac 402
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 341 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 282
Query: 715 cctgcatca 723
|||||||||
Sbjct: 281 cctgcatca 273
>gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF17D19
5-PRIME, mRNA sequence
Length = 638
Score = 141 bits (71), Expect = 4e-032
Identities = 137/159 (86%)
Strand = Plus / Minus
Query: 493 caggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatgg 552
||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct: 638 caggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaattggatga 579
Query: 553 aacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaa 612
| ||| ||||||||||| |||||||||| | |||||||||||||||| ||||| |||||
Sbjct: 578 atcatggcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtat 519
Query: 613 tgctgccaggagttgaagacgattgcgtctgggttccac 651
|| |||||||||||||||||||| || ||||| ||||||
Sbjct: 518 tgttgccaggagttgaagacgatagcatctggattccac 480
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 419 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 360
Query: 715 cctgcatca 723
|||||||||
Sbjct: 359 cctgcatca 351
>gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24j13 3', mRNA sequence
Length = 561
Score = 137 bits (69), Expect = 6e-031
Identities = 233/285 (81%), Gaps = 2/285 (0%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 275 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 333
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 334 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 393
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 394 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 453
Query: 486 gtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgt 545
||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |
Sbjct: 454 atcctgccaggtgatagcagatgctgctagagaaccagagtagctggaactgattgtaat 513
Query: 546 tggatggaacatagcaccactagactcgcggaaaagcgtctgcat 590
|||||| | ||| ||||||||||| |||||||||| | |||||||
Sbjct: 514 tggatgaatcatggcaccactagattcgcggaaaaacttctgcat 558
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 160 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 219
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 220 ggcagcgagcgtgacctgcatctg 243
>gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020B07f, mRNA sequence
Length = 832
Score = 121 bits (61), Expect = 3e-026
Identities = 160/193 (82%)
Strand = Plus / Minus
Query: 459 ctttactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtga 518
||||| ||| |||||| | ||| |||| || |||||||| || ||||| | ||| | ||
Sbjct: 562 ctttattctcaggaagttattcccggattcttgccaggtgatagcagaagttgctaaaga 503
Query: 519 acctgagtagctggagctgattgtcgttggatggaacatagcaccactagactcgcggaa 578
||| ||||||||||| |||||||| ||||||| | ||| || || ||||| ||||||||
Sbjct: 502 accagagtagctggaactgattgtaattggatgaatcatggcccccctagattcgcggaa 443
Query: 579 aagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacgattgc 638
|| | |||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 442 aaacttctgcatccagtaactaggagttccgtattgttgccaggagttgaagacgatagc 383
Query: 639 gtctgggttccac 651
||||| ||||||
Sbjct: 382 atctggattccac 370
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 309 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 250
Query: 715 cctgcatca 723
|||||||||
Sbjct: 249 cctgcatca 241
>gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015O10f, mRNA sequence
Length = 762
Score = 115 bits (58), Expect = 2e-024
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 482 cggagtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattg 541
|||| ||||||||||| | ||||| |||| || ||||| ||||||||||| |||||||
Sbjct: 278 cggaatcctgccaggtgacagcagatgctgttagagaaccagagtagctggaactgattg 219
Query: 542 tcgttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgg 601
||||||| | ||| ||||||||||| |||||||||| | | |||||||||||||| |
Sbjct: 218 caattggatgaatcatggcaccactagattcgcggaaaaacttttgcatccagtaactag 159
Query: 602 gagtgccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
|||| ||||| || ||||||||||||||||||| || ||||| ||||||
Sbjct: 158 gagttccgtattgttgccaggagttgaagacgacagcatctggattccac 109
>gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 5', mRNA sequence
Length = 639
Score = 105 bits (53), Expect = 2e-021
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 559 gcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgc 618
||||||||||| |||||||||| | |||||||||||||||| ||||| ||||| || |||
Sbjct: 629 gcaccactagattcgcggaaaaacttctgcatccagtaactaggagttccgtattgttgc 570
Query: 619 caggagttgaagacgattgcgtctgggttccac 651
||||||||||||||||| || ||||| ||||||
Sbjct: 569 caggagttgaagacgatagcatctggattccac 537
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 476 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 417
Query: 715 cctgcatca 723
|||||||||
Sbjct: 416 cctgcatca 408
>gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62C12
5-PRIME, mRNA sequence
Length = 557
Score = 103 bits (52), Expect = 8e-021
Identities = 133/160 (83%)
Strand = Plus / Minus
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||||||||| ||||| ||||| | |||||| ||||||||||| ||| | || | |||||
Sbjct: 426 ccaggtaattgcagatgctgccaatgaaccagagtagctggaattgagtctcataggatg 367
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| || ||||||||| || || ||||||| |||||||||||||| || ||||| || ||
Sbjct: 366 gatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagttccata 307
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
|| ||||||||||||||||| ||||| |||||| |||||
Sbjct: 306 ctgttgccaggagttgaagactattgcatctggggtccac 267
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 188 aggaatgcagcttctgccaatgaagctagaag 157
>gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. vulgare cDNA clone HA25B23
5-PRIME, mRNA sequence
Length = 558
Score = 97.6 bits (49), Expect = 5e-019
Identities = 127/153 (83%)
Strand = Plus / Minus
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||||||||| ||||| ||||| | |||||| ||||||||||| ||| | || | |||||
Sbjct: 162 ccaggtaattgcagatgctgccaatgaaccagagtagctggaattgagtctcataggatg 103
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| || ||||||||| || || ||||||| |||||||||||||| || ||||| || ||
Sbjct: 102 gatcacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagttccata 43
Query: 612 atgctgccaggagttgaagacgattgcgtctgg 644
|| ||||||||||||||||| ||||| |||||
Sbjct: 42 ctgttgccaggagttgaagactattgcatctgg 10
>gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49P14
5-PRIME, mRNA sequence
Length = 597
Score = 97.6 bits (49), Expect = 5e-019
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 495 ggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatggaa 554
|||||| ||||| ||||| | |||||| ||||||||||| ||| | || | |||||||
Sbjct: 597 ggtaattgcagatgctgccaatgaaccagagtagctggaattgagtctcataggatggat 538
Query: 555 catagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaatg 614
|| ||||||||| || || ||||||| |||||||||||||| || ||||| || || ||
Sbjct: 537 cacagcaccacttgattcacggaaaaatgtctgcatccagtagctaggagttccatactg 478
Query: 615 ctgccaggagttgaagacgattgcgtctgggttccac 651
||||||||||||||||| ||||| |||||| |||||
Sbjct: 477 ttgccaggagttgaagactattgcatctggggtccac 441
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 362 aggaatgcagcttctgccaatgaagctagaag 331
>gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_B24 5', mRNA sequence
Length = 453
Score = 95.6 bits (48), Expect = 2e-018
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||||||||| ||||| ||||| | |||||| ||||||||||| ||| | || | |||||
Sbjct: 202 ccaggtaattgcagatgctgccaatgaaccagagtagctggaattgagtctcataggatg 143
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| || ||||||||| || || ||||||| || ||||||||||| || ||||| || ||
Sbjct: 142 gatcacagcaccacttgattcacggaaaaatgtatgcatccagtagctaggagttccata 83
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
|| ||||||||||||||||| ||||| |||||| |||||
Sbjct: 82 ctgttgccaggagttgaagactattgcatctggggtccac 43
>gb|BE437927.1|BE437927 SFR009.A04F990512 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 515
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 514 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 455
Query: 715 cctgcatca 723
|||||||||
Sbjct: 454 cctgcatca 446
>gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 5', mRNA sequence
Length = 585
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||||||||| ||||||||||| ||||| ||||||| |||| ||||||| |||||||||
Sbjct: 480 ttcttctccagcccagtaaggaaggcagcctctgccagtgaaccaagaaggcttcctcta 421
Query: 715 cctgcatca 723
|||||||||
Sbjct: 420 cctgcatca 412
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 607 ccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||| || |||||||||||||||||||| || ||||| ||||||
Sbjct: 585 ccgtattgttgccaggagttgaagacgatagcatctggattccac 541
>gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63F05
5-PRIME, mRNA sequence
Length = 415
Score = 89.7 bits (45), Expect = 1e-016
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 503 cagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatggaacatagcac 562
|||| ||||| | |||||| ||||||||||| ||| | || | ||||||| || |||||
Sbjct: 415 cagatgctgccaatgaaccagagtagctggaattgagtctcataggatggatcacagcac 356
Query: 563 cactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccagg 622
|||| || || ||||||| |||||||||||||| || ||||| || || || |||||||
Sbjct: 355 cacttgattcacggaaaaatgtctgcatccagtagctaggagttccatactgttgccagg 296
Query: 623 agttgaagacgattgcgtctgggttccac 651
|||||||||| ||||| |||||| |||||
Sbjct: 295 agttgaagactattgcatctggggtccac 267
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 188 aggaatgcagcttctgccaatgaagctagaag 157
>gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19F12
5-PRIME, mRNA sequence
Length = 556
Score = 77.8 bits (39), Expect = 5e-013
Identities = 167/207 (80%), Gaps = 2/207 (0%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 255 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 197
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgt 425
|||||| ||| |||| ||||| |||||||| || ||||||||||| ||||||||
Sbjct: 196 aacagtagcgtttgaccccagcgcgttgatgctagcctggagcccggacacagagattgt 137
Query: 426 cagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcgga 485
||| |||| | || ||||||||||| | | ||||||||| |||||| | ||| ||||
Sbjct: 136 gaggctcacggtgtccgacccgaagttcacaatctttactctcaggaagttattcccgga 77
Query: 486 gtcctgccaggtaatcgcagacgctgc 512
||||||||||| || ||||| |||||
Sbjct: 76 atcctgccaggtgatagcagatgctgc 50
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 370 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 311
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 310 ggcagcgagcgtgacctgcatctg 287
>gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04K11r 3', mRNA sequence
Length = 499
Score = 73.8 bits (37), Expect = 7e-012
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 330 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 388
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagccc 410
|||||| ||| |||| ||||| |||||||| || |||||||||||
Sbjct: 389 aacagtagcgtttgaccccagcgcgttgatgctagcctggagccc 433
>gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M19r 3', mRNA sequence
Length = 514
Score = 73.8 bits (37), Expect = 7e-012
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 337 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 395
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagccc 410
|||||| ||| |||| ||||| |||||||| || |||||||||||
Sbjct: 396 aacagtagcgtttgaccccagcgcgttgatgctagcctggagccc 440
Score = 58.0 bits (29), Expect = 4e-007
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || || |||||| ||||||| |
Sbjct: 222 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcnaacgaggagaaggagtg 281
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 282 ggcagcgagcgtgacctgcatctg 305
>gb|BF267850.2|BF267850 HV_CEa0019B08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0019B08f, mRNA sequence
Length = 769
Score = 73.8 bits (37), Expect = 7e-012
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 655 ttcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctcta 714
||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||||||
Sbjct: 309 ttcttatccagcccagtaaggaagtcagcctctgccagtgaaccaagaaggcttcctcta 250
Query: 715 cctgcatca 723
|||||||||
Sbjct: 249 cctgcatca 241
Score = 38.2 bits (19), Expect = 0.40
Identities = 46/55 (83%)
Strand = Plus / Minus
Query: 523 gagtagctggagctgattgtcgttggatggaacatagcaccactagactcgcgga 577
||||||||| | ||||| || ||||||| | ||| ||||||||||| |||||||
Sbjct: 498 gagtagctgaaactgatggtaattggatgaatcatggcaccactagattcgcgga 444
>gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_M09 5', mRNA sequence
Length = 429
Score = 73.8 bits (37), Expect = 7e-012
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 129 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 71
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagccc 410
|||||| ||| |||| ||||| |||||||| || |||||||||||
Sbjct: 70 aacagtagcgtttgaccccagcgcgttgatgctagcctggagccc 26
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 244 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 185
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 184 ggcagcgagcgtgacctgcatctg 161
>gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200082D06F1, mRNA sequence
Length = 240
Score = 73.8 bits (37), Expect = 7e-012
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctg-atgtgag 365
||||| |||||||||||||| ||||| || ||||||||| | |||| ||||| | |||||
Sbjct: 114 ggcacgaccttggttgggttactgaaagaattttcatcctttacat-tgctggacgtgag 56
Query: 366 aacagtggcggttgatcccagagcgttgatactggcctggagccc 410
|||||| ||| |||| ||||| |||||||| || |||||||||||
Sbjct: 55 aacagtagcgtttgaccccagcgcgttgatgctagcctggagccc 11
Score = 63.9 bits (32), Expect = 7e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 229 tcacatctctgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 170
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 169 ggcagcgagcgtgacctgcatctg 146
>gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06J09r 3', mRNA sequence
Length = 186
Score = 71.9 bits (36), Expect = 3e-011
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 459 ctttactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtga 518
||||||||| |||||| | ||| |||| ||||||||||| || ||||| |||| || ||
Sbjct: 54 ctttactctnaggaagttattcccggaatcctgccaggtgatagcagatgctgntagaga 113
Query: 519 acctgagtagctggagctgattgtcgttggatggaacatagcaccacta 567
||| ||||||||||| |||||||| ||||||| | | | |||||||||
Sbjct: 114 accagagtagctggaactgattgtaattggatgaatcntggcaccacta 162
>gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-17
similar to Arabinoxylan arabinofuranohydrolase gene,
mRNA sequence
Length = 332
Score = 58.0 bits (29), Expect = 4e-007
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
|||||||| || ||||||| ||||||||| || || || ||||||||| ||||||| |
Sbjct: 216 tcacatctntgcgacaagctcggactgagcaagcgcaaggtcgaacgaggagaaggagtg 157
Query: 252 aggagccagcgtgacctgcatctg 275
| ||| |||||||||||||||||
Sbjct: 156 ggcagcgagcgtgacctgcatctg 133
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 307 ggcacaaccttggttgggttgctgaaggagttttcatcc 345
||||| |||||||||||||| ||||| || |||||||||
Sbjct: 101 ggcacgaccttggttgggttactgaaagaattttcatcc 63
>gb|AL508926.1|AL508926 AL508926 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10D08V 5',
mRNA sequence
Length = 700
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 693 aggaatgcagcttctgccaatgaagctagaag 662
>gb|BQ460225.1|BQ460225 HA06N22r HA Hordeum vulgare subsp. vulgare cDNA clone HA06N22
5-PRIME, mRNA sequence
Length = 644
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 638 aggaatgcagcttctgccaatgaagctagaag 607
>gb|BU970673.1|BU970673 HB15F13r BC Hordeum vulgare subsp. vulgare cDNA clone HB15F13
5-PRIME, mRNA sequence
Length = 492
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 491 aggaatgcagcttctgccaatgaagctagaag 460
>gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
3-PRIME, mRNA sequence
Length = 570
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 251 gaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggca 310
|||||| ||||||||||||||||| ||| ||||| | || || ||| | | |||||||
Sbjct: 492 gaggaggcagcgtgacctgcatctcctccgcagcgtcgcgcaactcgaccgtcaccggca 551
Query: 311 caaccttggttgggtt 326
|||||||| |||||||
Sbjct: 552 caaccttgtttgggtt 567
>gb|CA027928.1|CA027928 HZ60H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60H12
5-PRIME, mRNA sequence
Length = 439
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 362 aggaatgcagcttctgccaatgaagctagaag 331
>gb|CA028388.1|CA028388 HZ61N07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61N07
5-PRIME, mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 673 aggaaagcagcttctgccaatgaagcaagaag 704
||||| |||||||||||||||||||| |||||
Sbjct: 362 aggaatgcagcttctgccaatgaagctagaag 331
>gb|CA025468.1|CA025468 HZ52E03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52E03
5-PRIME, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctgga 533
||||||||| ||||| ||||| | |||||| |||||||||||
Sbjct: 78 ccaggtaattgcagatgctgccaatgaaccagagtagctgga 37
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,180
Number of Sequences: 312970
Number of extensions: 62180
Number of successful extensions: 18001
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17898
Number of HSP's gapped (non-prelim): 86
length of query: 739
length of database: 175,134,539
effective HSP length: 19
effective length of query: 720
effective length of database: 169,188,109
effective search space: 121815438480
effective search space used: 121815438480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)