BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU985429.1|BU985429 HF07C20r HF Hordeum vulgare subsp. v... 194 2e-048
gb|CA013386.1|CA013386 HT08E14r HT Hordeum vulgare subsp. v... 101 3e-020
emb|X69931.1|HVRNASS H.vulgare mRNA for sucrose synthase 84 6e-015
gb|BJ470033.1|BJ470033 BJ470033 K. Sato unpublished cDNA li... 80 9e-014
gb|BQ460398.1|BQ460398 HA09M15r HA Hordeum vulgare subsp. v... 80 9e-014
gb|BQ657072.1|BQ657072 HA09M15u HA Hordeum vulgare subsp. v... 80 9e-014
gb|BM099962.2|BM099962 EBes01_SQ004_M09_R embryo sac, 4-6 D... 80 9e-014
gb|BI776605.2|BI776605 EBpi07_SQ001_B23_R pistil, 12 DPA, n... 80 9e-014
gb|BM097264.2|BM097264 EBpi07_SQ002_O17_R pistil, 12 DPA, n... 80 9e-014
gb|BU984632.1|BU984632 HF04I06r HF Hordeum vulgare subsp. v... 80 9e-014
gb|CA017364.1|CA017364 HV12M11u HV Hordeum vulgare subsp. v... 80 9e-014
gb|CB860106.1|CB860106 HI12K21w HI Hordeum vulgare subsp. v... 80 9e-014
gb|BI950121.1|BI950121 HVSMEl0018N18f Hordeum vulgare spike... 78 4e-013
gb|AL506943.1|AL506943 AL506943 Hordeum vulgare Barke devel... 76 1e-012
gb|AL508802.1|AL508802 AL508802 Hordeum vulgare Barke devel... 76 1e-012
gb|AL510834.1|AL510834 AL510834 Hordeum vulgare Barke devel... 76 1e-012
gb|AL511145.1|AL511145 AL511145 Hordeum vulgare Barke devel... 76 1e-012
gb|AL511239.1|AL511239 AL511239 Hordeum vulgare Barke devel... 76 1e-012
gb|BI949170.1|BI949170 HVSMEl0012K08f Hordeum vulgare spike... 76 1e-012
gb|BG415200.1|BG415200 HVSMEk0005I13f Hordeum vulgare testa... 76 1e-012
gb|BE195797.3|BE195797 HVSMEh0090H19f Hordeum vulgare 5-45 ... 76 1e-012
gb|BG414980.2|BG414980 HVSMEk0004I12f Hordeum vulgare testa... 76 1e-012
gb|BG415722.2|BG415722 HVSMEk0007J09f Hordeum vulgare testa... 76 1e-012
gb|BQ459992.1|BQ459992 HA07I08r HA Hordeum vulgare subsp. v... 76 1e-012
gb|BQ460709.1|BQ460709 HA06C13r HA Hordeum vulgare subsp. v... 76 1e-012
gb|BQ464339.1|BQ464339 HF02A01r HF Hordeum vulgare subsp. v... 76 1e-012
gb|BQ472946.1|BQ472946 HB01A03r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BQ754675.1|BQ754675 EBed01_SQ003_H22_R endosperm, 6 DPA,... 76 1e-012
gb|BU966933.1|BU966933 HB02M23r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU968793.1|BU968793 HB08J17r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU969810.1|BU969810 HB12K17r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU970962.1|BU970962 HB16D07r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU973029.1|BU973029 HB23I05r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU973694.1|BU973694 HB25K18r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU973917.1|BU973917 HB26G10r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU984072.1|BU984072 HA31O14r HA Hordeum vulgare subsp. v... 76 1e-012
gb|BU987212.1|BU987212 HF14B23r HF Hordeum vulgare subsp. v... 76 1e-012
gb|CK122773.1|CK122773 BES1824105l14 BES1824 Hordeum vulgar... 76 1e-012
gb|CK124965.1|CK124965 BES1824111A2d09 BES1824 Hordeum vulg... 76 1e-012
emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene 76 1e-012
gb|AW983411.2|AW983411 HVSMEg0010I18f Hordeum vulgare pre-a... 70 9e-011
gb|BI958295.1|BI958295 HVSMEn0014E13f Hordeum vulgare rachi... 70 9e-011
gb|BG345116.2|BG345116 HVSMEg0018M02f Hordeum vulgare pre-a... 70 9e-011
gb|BE193575.3|BE193575 HVSMEh0081M04f Hordeum vulgare 5-45 ... 68 4e-010
gb|BU969903.1|BU969903 HB12P21r BC Hordeum vulgare subsp. v... 68 4e-010
gb|BF261110.2|BF261110 HVSMEf0023M14f Hordeum vulgare seedl... 66 1e-009
gb|BE060290.2|BE060290 HVSMEg0011O01f Hordeum vulgare pre-a... 66 1e-009
gb|BG365276.1|BG365276 HVSMEi0002B22f Hordeum vulgare 20 DA... 66 1e-009
gb|BG369184.1|BG369184 HVSMEi0023A09f Hordeum vulgare 20 DA... 66 1e-009
gb|BI957022.1|BI957022 HVSMEn0007A12f Hordeum vulgare rachi... 66 1e-009
gb|BI957023.1|BI957023 HVSMEn0007A14f Hordeum vulgare rachi... 66 1e-009
gb|BG414847.1|BG414847 HVSMEk0003P09f Hordeum vulgare testa... 66 1e-009
gb|BG415034.1|BG415034 HVSMEk0004M12f Hordeum vulgare testa... 66 1e-009
gb|BG415831.1|BG415831 HVSMEk0007P05f Hordeum vulgare testa... 66 1e-009
gb|BE230866.2|BE230866 HVSMEg0001A18f Hordeum vulgare pre-a... 66 1e-009
gb|BE060570.3|BE060570 HVSMEg0012K14f Hordeum vulgare pre-a... 66 1e-009
gb|BE195904.3|BE195904 HVSMEh0090N12f Hordeum vulgare 5-45 ... 66 1e-009
gb|BG367939.2|BG367939 HVSMEi0014N22f Hordeum vulgare 20 DA... 66 1e-009
gb|BG368222.2|BG368222 HVSMEi0016L23f Hordeum vulgare 20 DA... 66 1e-009
gb|BG414333.2|BG414333 HVSMEk0001I07f Hordeum vulgare testa... 66 1e-009
gb|AV922975.1|AV922975 AV922975 K. Sato unpublished cDNA li... 66 1e-009
gb|AV925318.1|AV925318 AV925318 K. Sato unpublished cDNA li... 66 1e-009
gb|BU994515.1|BU994515 HM07F03r HM Hordeum vulgare subsp. v... 66 1e-009
gb|CA003640.1|CA003640 HS15B20r HS Hordeum vulgare subsp. v... 66 1e-009
gb|CA006778.1|CA006778 HU05K21r HU Hordeum vulgare subsp. v... 66 1e-009
gb|CA007362.1|CA007362 HU07L06r HU Hordeum vulgare subsp. v... 66 1e-009
gb|CA007705.1|CA007705 HU08M22r HU Hordeum vulgare subsp. v... 66 1e-009
gb|CA008009.1|CA008009 HU09K06r HU Hordeum vulgare subsp. v... 66 1e-009
gb|CA027932.1|CA027932 HZ60H16r HZ Hordeum vulgare subsp. v... 66 1e-009
gb|CA027988.1|CA027988 HZ60K10r HZ Hordeum vulgare subsp. v... 66 1e-009
gb|CA029890.1|CA029890 HX05I01r HX Hordeum vulgare subsp. v... 66 1e-009
gb|CA031028.1|CA031028 HX08M24r HX Hordeum vulgare subsp. v... 66 1e-009
gb|AU252357.1|AU252357 AU252357 salt-stressed barley root c... 66 1e-009
gb|AU252359.1|AU252359 AU252359 salt-stressed barley root c... 66 1e-009
gb|CK123581.1|CK123581 BES1824104i15 BES1824 Hordeum vulgar... 66 1e-009
emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase 66 1e-009
gb|BI950098.1|BI950098 HVSMEl0018J22f Hordeum vulgare spike... 60 9e-008
gb|BU969651.1|BU969651 HB12C16r BC Hordeum vulgare subsp. v... 60 9e-008
gb|BG416850.1|BG416850 HVSMEk0014N09f Hordeum vulgare testa... 58 3e-007
gb|AL505351.1|AL505351 AL505351 Hordeum vulgare Barke roots... 54 5e-006
gb|AL506015.1|AL506015 AL506015 Hordeum vulgare Barke devel... 54 5e-006
gb|BE194218.3|BE194218 HVSMEh0084K16f Hordeum vulgare 5-45 ... 52 2e-005
gb|BM370857.2|BM370857 EBro04_SQ002_J03_R root, 3 week, sal... 50 8e-005
gb|CA009422.1|CA009422 HU14B07r HU Hordeum vulgare subsp. v... 50 8e-005
gb|CA012429.1|CA012429 HT05G13r HT Hordeum vulgare subsp. v... 50 8e-005
gb|CA032999.1|CA032999 HX14N04r HX Hordeum vulgare subsp. v... 50 8e-005
gb|BU972703.1|BU972703 HB22H15r BC Hordeum vulgare subsp. v... 48 3e-004
gb|BU972845.1|BU972845 HB22O08r BC Hordeum vulgare subsp. v... 44 0.005
gb|CV060973.1|CV060973 BNEL63e10 Barley EST endosperm libra... 44 0.005
gb|CV062712.1|CV062712 BNEL82b2 Barley EST endosperm librar... 44 0.005
gb|BU967592.1|BU967592 HB04M10r BC Hordeum vulgare subsp. v... 42 0.020
gb|BU968909.1|BU968909 HB08P07r BC Hordeum vulgare subsp. v... 42 0.020
gb|BF624183.1|BF624183 HVSMEa0012H08f Hordeum vulgare seedl... 40 0.080
gb|BF259717.2|BF259717 HVSMEf0020B05f Hordeum vulgare seedl... 38 0.31
gb|BI949981.1|BI949981 HVSMEl0017H20f Hordeum vulgare spike... 38 0.31
gb|BI956764.1|BI956764 HVSMEn0005D19f Hordeum vulgare rachi... 38 0.31
gb|BQ758453.1|BQ758453 EBma05_SQ003_O23_R maternal, 12 DPA,... 38 0.31
>gb|BU985429.1|BU985429 HF07C20r HF Hordeum vulgare subsp. vulgare cDNA clone HF07C20
5-PRIME, mRNA sequence
Length = 432
Score = 194 bits (98), Expect = 2e-048
Identities = 250/298 (83%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| ||||| || ||||||| ||| || ||||| ||||||||||
Sbjct: 46 accgcgttgtccatgggattgatgtttttgatccaa-gtt-aacatagtatctcctggag 103
Query: 61 ctgacatgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatg 120
|||||||||| ||||| |||||| || || ||||||||||| ||||| | |||||||
Sbjct: 104 ctgacatgtctatatattttccattcactgaaaaggccaagcggctcactgcccttcatg 163
Query: 121 gttcaatcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctgg 180
||||||| || | |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 164 gttcaattgagagcttgatttatgacccagagcaaaacgatgaacacattggacatctgg 223
Query: 181 atgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataa 240
|||||| || || || || |||||||||||||||||||| ||| |||| || ||||| |
Sbjct: 224 atgacccatcgaaaccaattctcttctccatggcaagacttgaccgggttaaaaacatga 283
Query: 241 cagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgt 298
|||| || ||| |||||| | ||| ||||||||| ||| |||||||||||||||
Sbjct: 284 caggactagtcaaagcttatagtaaaaacgctaagctaaggtcgctggtaaaccttgt 341
>gb|CA013386.1|CA013386 HT08E14r HT Hordeum vulgare subsp. vulgare cDNA clone HT08E14
5-PRIME, mRNA sequence
Length = 578
Score = 101 bits (51), Expect = 3e-020
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| ||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 491 accgcgttgtccatgggattgatgtttttgatccaaagttcaacatagtatctcctggag 550
Query: 61 ctgacatgtccatatactttcca 83
|||||||||| ||||| ||||||
Sbjct: 551 ctgacatgtctatatattttcca 573
>emb|X69931.1|HVRNASS H.vulgare mRNA for sucrose synthase
Length = 2708
Score = 83.8 bits (42), Expect = 6e-015
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 1550 gttgtccatggtatcgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 1609
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 1610 atgtccatctactt 1623
>gb|BJ470033.1|BJ470033 BJ470033 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14o21 5', mRNA sequence
Length = 576
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 192 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 250
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 251 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 310
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 311 catggtcggcggctac 326
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 102 atgaagagcggaagccagaaatc 124
>gb|BQ460398.1|BQ460398 HA09M15r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M15
5-PRIME, mRNA sequence
Length = 531
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 184 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 242
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 243 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 302
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 303 catggtcggcggctac 318
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 94 atgaagagcggaagccagaaatc 116
>gb|BQ657072.1|BQ657072 HA09M15u HA Hordeum vulgare subsp. vulgare cDNA clone HA09M15
3-PRIME, mRNA sequence
Length = 496
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Minus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 396 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 338
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 337 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 278
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 277 catggtcggcggctac 262
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 486 atgaagagcggaagccagaaatc 464
>gb|BM099962.2|BM099962 EBes01_SQ004_M09_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ004_M09 5', mRNA sequence
Length = 451
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 86 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 144
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 145 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 204
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 205 catggtcggcggctac 220
>gb|BI776605.2|BI776605 EBpi07_SQ001_B23_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_B23 5', mRNA sequence
Length = 462
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 84 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 142
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 143 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 202
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 203 catggtcggcggctac 218
>gb|BM097264.2|BM097264 EBpi07_SQ002_O17_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_O17 5', mRNA sequence
Length = 475
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 84 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 142
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 143 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 202
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 203 catggtcggcggctac 218
>gb|BU984632.1|BU984632 HF04I06r HF Hordeum vulgare subsp. vulgare cDNA clone HF04I06
5-PRIME, mRNA sequence
Length = 481
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 116 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 174
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 175 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 234
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 235 catggtcggcggctac 250
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 26 atgaagagcggaagccagaaatc 48
>gb|CA017364.1|CA017364 HV12M11u HV Hordeum vulgare subsp. vulgare cDNA clone HV12M11
3-PRIME, mRNA sequence
Length = 538
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Minus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 405 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 347
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 346 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 287
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 286 catggtcggcggctac 271
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 495 atgaagagcggaagccagaaatc 473
>gb|CB860106.1|CB860106 HI12K21w HI Hordeum vulgare subsp. vulgare cDNA clone HI12K21
3-PRIME, mRNA sequence
Length = 509
Score = 79.8 bits (40), Expect = 9e-014
Identities = 113/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Minus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
|||||||| ||| |||| || ||||| ||||| ||| || || ||||| || ||||| ||
Sbjct: 354 gtctttgcgtcggcgatcgggttaggcatatc-ggctgcactgctgtcagtcatgggatc 296
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
|||||||||||||| || ||||| |||||||| || |||||||||| | | ||| ||||
Sbjct: 295 tcgcttcaagaagtctggaaagatattcccagcaggcgtcgtgtcccttctttccttggt 236
Query: 529 catggtcggaggctac 544
||||||||| ||||||
Sbjct: 235 catggtcggcggctac 220
Score = 38.2 bits (19), Expect = 0.31
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatc 359
|||||||| ||||||||||||||
Sbjct: 444 atgaagagcggaagccagaaatc 422
>gb|BI950121.1|BI950121 HVSMEl0018N18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018N18f, mRNA sequence
Length = 881
Score = 77.8 bits (39), Expect = 4e-013
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 450 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 509
Query: 66 atgtccatatactttcca 83
|||||||| ||||| |||
Sbjct: 510 atgtccatctacttncca 527
>gb|AL506943.1|AL506943 AL506943 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04L06T 5',
mRNA sequence
Length = 700
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 507 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 566
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 567 atgtccatctactt 580
>gb|AL508802.1|AL508802 AL508802 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09N15V 5',
mRNA sequence
Length = 692
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 447 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 506
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 507 atgtccatctactt 520
>gb|AL510834.1|AL510834 AL510834 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06C06u 3',
mRNA sequence
Length = 595
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 205 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 264
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 265 atgtccatctactt 278
>gb|AL511145.1|AL511145 AL511145 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07C09u 3',
mRNA sequence
Length = 576
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 205 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 264
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 265 atgtccatctactt 278
>gb|AL511239.1|AL511239 AL511239 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07H01u 3',
mRNA sequence
Length = 586
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 206 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 265
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 266 atgtccatctactt 279
>gb|BI949170.1|BI949170 HVSMEl0012K08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0012K08f, mRNA sequence
Length = 891
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 217 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 276
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 277 atgtccatctactt 290
>gb|BG415200.1|BG415200 HVSMEk0005I13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005I13f, mRNA sequence
Length = 928
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 437 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 496
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 497 atgtccatctactt 510
>gb|BE195797.3|BE195797 HVSMEh0090H19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090H19f, mRNA sequence
Length = 630
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 301 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 360
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 361 atgtccatctactt 374
>gb|BG414980.2|BG414980 HVSMEk0004I12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I12f, mRNA sequence
Length = 895
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 441 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 500
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 501 atgtccatctactt 514
>gb|BG415722.2|BG415722 HVSMEk0007J09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007J09f, mRNA sequence
Length = 651
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 442 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 501
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 502 atgtccatctactt 515
>gb|BQ459992.1|BQ459992 HA07I08r HA Hordeum vulgare subsp. vulgare cDNA clone HA07I08
5-PRIME, mRNA sequence
Length = 629
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 452 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 511
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 512 atgtccatctactt 525
>gb|BQ460709.1|BQ460709 HA06C13r HA Hordeum vulgare subsp. vulgare cDNA clone HA06C13
5-PRIME, mRNA sequence
Length = 609
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 453 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 512
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 513 atgtccatctactt 526
>gb|BQ464339.1|BQ464339 HF02A01r HF Hordeum vulgare subsp. vulgare cDNA clone HF02A01
5-PRIME, mRNA sequence
Length = 511
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 365 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 424
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 425 atgtccatctactt 438
>gb|BQ472946.1|BQ472946 HB01A03r BC Hordeum vulgare subsp. vulgare cDNA clone HB01A03
5-PRIME, mRNA sequence
Length = 622
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 244 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 303
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 304 atgtccatctactt 317
>gb|BQ754675.1|BQ754675 EBed01_SQ003_H22_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_H22 5', mRNA sequence
Length = 719
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 556 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 615
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 616 atgtccatctactt 629
>gb|BU966933.1|BU966933 HB02M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB02M23
5-PRIME, mRNA sequence
Length = 555
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 454 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 513
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 514 atgtccatctactt 527
>gb|BU968793.1|BU968793 HB08J17r BC Hordeum vulgare subsp. vulgare cDNA clone HB08J17
5-PRIME, mRNA sequence
Length = 654
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 477 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 536
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 537 atgtccatctactt 550
>gb|BU969810.1|BU969810 HB12K17r BC Hordeum vulgare subsp. vulgare cDNA clone HB12K17
5-PRIME, mRNA sequence
Length = 543
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 453 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 512
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 513 atgtccatctactt 526
>gb|BU970962.1|BU970962 HB16D07r BC Hordeum vulgare subsp. vulgare cDNA clone HB16D07
5-PRIME, mRNA sequence
Length = 421
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 216 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 275
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 276 atgtccatctactt 289
>gb|BU973029.1|BU973029 HB23I05r BC Hordeum vulgare subsp. vulgare cDNA clone HB23I05
5-PRIME, mRNA sequence
Length = 601
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 318 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 377
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 378 atgtccatctactt 391
>gb|BU973694.1|BU973694 HB25K18r BC Hordeum vulgare subsp. vulgare cDNA clone HB25K18
5-PRIME, mRNA sequence
Length = 602
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 447 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 506
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 507 atgtccatctactt 520
>gb|BU973917.1|BU973917 HB26G10r BC Hordeum vulgare subsp. vulgare cDNA clone HB26G10
5-PRIME, mRNA sequence
Length = 509
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 210 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 269
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 270 atgtccatctactt 283
>gb|BU984072.1|BU984072 HA31O14r HA Hordeum vulgare subsp. vulgare cDNA clone HA31O14
5-PRIME, mRNA sequence
Length = 519
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 432 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 491
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 492 atgtccatctactt 505
>gb|BU987212.1|BU987212 HF14B23r HF Hordeum vulgare subsp. vulgare cDNA clone HF14B23
5-PRIME, mRNA sequence
Length = 596
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 430 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 489
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 490 atgtccatctactt 503
>gb|CK122773.1|CK122773 BES1824105l14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L145 5-PRIME, mRNA sequence
Length = 720
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 444 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 503
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 504 atgtccatctactt 517
>gb|CK124965.1|CK124965 BES1824111A2d09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D0911 5-PRIME, mRNA sequence
Length = 928
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 457 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 516
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 517 atgtccatctactt 530
>emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene
Length = 5785
Score = 75.8 bits (38), Expect = 1e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 4364 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 4423
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 4424 atgtccatctactt 4437
>gb|AW983411.2|AW983411 HVSMEg0010I18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010I18f, mRNA sequence
Length = 799
Score = 69.9 bits (35), Expect = 9e-011
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| |||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct: 368 accgtgttgtccatggtatcgatgttttcgaccccaagtttaacatagtctcacctggtg 427
Query: 61 ctgacatgtccatatactt 79
| ||||||||||| |||||
Sbjct: 428 cggacatgtccatctactt 446
>gb|BI958295.1|BI958295 HVSMEn0014E13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014E13f, mRNA sequence
Length = 646
Score = 69.9 bits (35), Expect = 9e-011
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| |||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct: 390 accgtgttgtccatggtatcgatgttttcgaccccaagtttaacatagtctcacctggtg 449
Query: 61 ctgacatgtccatatactt 79
| ||||||||||| |||||
Sbjct: 450 cggacatgtccatctactt 468
>gb|BG345116.2|BG345116 HVSMEg0018M02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018M02f, mRNA sequence
Length = 873
Score = 69.9 bits (35), Expect = 9e-011
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| |||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct: 226 accgtgttgtccatggtatcgatgttttcgaccccaagtttaacatagtctcacctggtg 285
Query: 61 ctgacatgtccatatactt 79
| ||||||||||| |||||
Sbjct: 286 cggacatgtccatctactt 304
>gb|BE193575.3|BE193575 HVSMEh0081M04f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M04f, mRNA sequence
Length = 744
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||||| || |||||||| || || |||||||| ||||||
Sbjct: 442 gttgtccatggtattgatgtcttcgaccccaagttcaacatcgtgtctcctggtgctgac 501
Query: 66 atgtccatatactt 79
|||| ||| |||||
Sbjct: 502 atgttcatctactt 515
>gb|BU969903.1|BU969903 HB12P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB12P21
5-PRIME, mRNA sequence
Length = 203
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| || ||||||||| | || |||||||| || || |||||||| ||||||
Sbjct: 49 gttgtccatggtattgatgtcttccaccccaagttcaacatcgtgtctcctggtgctgac 108
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 109 atgtccatctactt 122
>gb|BF261110.2|BF261110 HVSMEf0023M14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M14f, mRNA sequence
Length = 728
Score = 65.9 bits (33), Expect = 1e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| || || || ||||| |||||||| || |||||||||||||
Sbjct: 60 accgggttgtccatgggattgacgtgtttgatcctaagttcaacatcgtctctcctggag 119
Query: 61 ctgacatgtccatatactttccacataccgaga 93
| |||||| | | ||||| ||| |||||||||
Sbjct: 120 cagacatgactgtctacttcccatataccgaga 152
>gb|BE060290.2|BE060290 HVSMEg0011O01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011O01f, mRNA sequence
Length = 631
Score = 65.9 bits (33), Expect = 1e-009
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| |||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct: 320 accgtgttgtccatggtatcgatgttttcgaccccaagtttaacatagtctcacctggtg 379
Query: 61 ctgacatgtccatatactttcca 83
| ||||||| ||| ||||| |||
Sbjct: 380 cggacatgtncatctacttncca 402
>gb|BG365276.1|BG365276 HVSMEi0002B22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002B22f, mRNA sequence
Length = 818
Score = 65.9 bits (33), Expect = 1e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| || || || ||||| |||||||| || |||||||||||||
Sbjct: 394 accgggttgtccatgggattgacgtgtttgatcctaagttcaacatcgtctctcctggag 453
Query: 61 ctgacatgtccatatactttccacataccgaga 93
| |||||| | | ||||| ||| |||||||||
Sbjct: 454 cagacatgactgtctacttcccatataccgaga 486
>gb|BG369184.1|BG369184 HVSMEi0023A09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0023A09f, mRNA sequence
Length = 806
Score = 65.9 bits (33), Expect = 1e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| || || || ||||| |||||||| || |||||||||||||
Sbjct: 270 accgggttgtccatgggattgacgtgtttgatcctaagttcaacatcgtctctcctggag 329
Query: 61 ctgacatgtccatatactttccacataccgaga 93
| |||||| | | ||||| ||| |||||||||
Sbjct: 330 cagacatgactgtctacttcccatataccgaga 362
>gb|BI957022.1|BI957022 HVSMEn0007A12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007A12f, mRNA sequence
Length = 1132
Score = 65.9 bits (33), Expect = 1e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| |||||||||||||| || || || ||||| |||||||| || |||||||||||||
Sbjct: 140 accgggttgtccatgggattgacgtgtttgatcctaagttcaacatcgtctctcctggag 199
Query: 61 ctgacatgtccatatactttccacataccgaga 93
| |||||| | | ||||| ||| |||||||||
Sbjct: 200 cagacatgactgtctacttcccatataccgaga 232
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,999
Number of Sequences: 312970
Number of extensions: 48999
Number of successful extensions: 12640
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 92
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12486
Number of HSP's gapped (non-prelim): 152
length of query: 589
length of database: 175,134,539
effective HSP length: 19
effective length of query: 570
effective length of database: 169,188,109
effective search space: 96437222130
effective search space used: 96437222130
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)