BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 291 1e-077
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 264 3e-069
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 86 2e-015
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 86 2e-015
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 86 2e-015
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 86 2e-015
gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. v... 76 2e-012
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 74 6e-012
gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgar... 74 6e-012
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 72 2e-011
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 66 1e-009
gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. v... 60 9e-008
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 52 2e-005
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 52 2e-005
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 50 9e-005
gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA li... 46 0.001
gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA li... 42 0.022
gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA li... 40 0.085
emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragme... 38 0.34
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 291 bits (147), Expect = 1e-077
Identities = 301/351 (85%), Gaps = 1/351 (0%)
Strand = Plus / Plus
Query: 282 tgtcagcagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcacc 341
||||| ||||||||||||| ||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 203 tgtcaacagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcacg 262
Query: 342 gagactccgctcgggccattggaggtcttggacgtctggttgtccaacatctctggttcc 401
||| || ||| ||| ||||| |||| ||||| ||||| ||| ||| ||| || |||
Sbjct: 263 gaggtaccattcgtcccactggagctcttcgacgtgtggttctccgacagctccggctcc 322
Query: 402 atgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaa 461
||||||||||| ||||| ||||| |||| || ||||| |||||||| ||||| || ||
Sbjct: 323 atgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacggaa 382
Query: 462 accgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcg 521
|| ||||| |||||||| || |||||||||||||||||||||| ||| | ||||||||||
Sbjct: 383 acagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatttcg 442
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| || |||
Sbjct: 443 tctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccc 502
Query: 582 t-ggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggca 553
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 264 bits (133), Expect = 3e-069
Identities = 208/233 (89%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||| ||||| ||||| |||| || ||||| |||||||| ||||| ||
Sbjct: 470 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacg 411
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
|||| ||||| |||||||| || |||||||||||||||||||||| ||| | |||||||
Sbjct: 410 gaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatt 351
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct: 350 tcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgta 291
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccctggattccagcgtgactacagaggtagaaatcaaactccgttgggtggca 238
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 356 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 297
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||| || ||||| |||||||| |||||||||| | | ||||
Sbjct: 296 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttgtgagagtttgcaac 237
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || || || |||||||| |||||||| ||||| |||| ||||||| || |||
Sbjct: 236 tcatcagcagtaaatttgttctcgtcccagagaacatgatagtgggcaggccggcttgtt 177
Query: 579 ccctggattccagcatgactacagaggtagaaatc 613
||||| || |||||||| ||||| | |||||||||
Sbjct: 176 ccctgaatgccagcatggctacacaagtagaaatc 142
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 439 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 498
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||| || ||||| |||||||| |||||||||| | | ||||
Sbjct: 499 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttgtgagagtttgcaac 558
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || || || |||||||| |||||||| ||||| |||| ||||||| || |||
Sbjct: 559 tcatcagcagtaaatttgttctcgtcccagagaacatgatagtgggcaggccggcttgtt 618
Query: 579 ccctggattccagcatgactacagaggtagaaatc 613
||||| || |||||||| ||||| | |||||||||
Sbjct: 619 ccctgaatgccagcatggctacacaagtagaaatc 653
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 291 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 350
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||| || ||||| |||||||| |||||||||| | | ||||
Sbjct: 351 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttgtgagagtttgcaac 410
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || || || |||||||| |||||||| ||||| |||| ||||||| || |||
Sbjct: 411 tcatcagcagtaaatttgttctcgtcccagagaacatgatagtgggcaggccggcttgtt 470
Query: 579 ccctggattccagcatgactacagaggtagaaatc 613
||||| || |||||||| ||||| | |||||||||
Sbjct: 471 ccctgaatgccagcatggctacacaagtagaaatc 505
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 469 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 410
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||| || ||||| |||||||| |||||||||| | | ||||
Sbjct: 409 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttgtgagagtttgcaac 350
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || || || |||||||| |||||||| ||||| |||| ||||||| || |||
Sbjct: 349 tcatcagcagtaaatttgttctcgtcccagagaacatgatagtgggcaggccggcttgtt 290
Query: 579 ccctggattccagcatgactacagaggtagaaatc 613
||||| || |||||||| ||||| | |||||||||
Sbjct: 289 ccctgaatgccagcatggctacacaagtagaaatc 255
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 85.7 bits (43), Expect = 2e-015
Identities = 172/215 (80%)
Strand = Plus / Plus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 340 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 399
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||| || ||||| |||||||| |||||||||| | | ||||
Sbjct: 400 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttgtgagagtttgcaac 459
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || || || |||||||| |||||||| ||||| |||| ||||||| || |||
Sbjct: 460 tcatcagcagtaaatttgttctcgtcccagagaacatgatagtgggcaggccggcttgtt 519
Query: 579 ccctggattccagcatgactacagaggtagaaatc 613
||||| || |||||||| ||||| | |||||||||
Sbjct: 520 ccctgaatgccagcatggctacacaagtagaaatc 554
>gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61F01
5-PRIME, mRNA sequence
Length = 468
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 128 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 69
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| || ||||| ||||| || ||||| |||||||| ||||||||||
Sbjct: 68 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgtttg 23
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 73.8 bits (37), Expect = 6e-012
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 531 aaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattcca 590
||||||||||||||||| ||||||||| | || ||||| | || |||||||| || |||
Sbjct: 332 aaattgttctcatcccaaaggacatggtaatgcgcagggcggcttgttccctgaatacca 273
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| ||||||||||| |||||
Sbjct: 272 gcatggctacaaaggtagaaatcgaactc 244
Score = 40.1 bits (20), Expect = 0.085
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 397 gttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaa 456
||||||||||||||||||| || || || || | ||| || |||||||| ||||| ||||
Sbjct: 466 gttccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaa 407
>gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N072 5-PRIME, mRNA sequence
Length = 614
Score = 73.8 bits (37), Expect = 6e-012
Identities = 88/105 (83%)
Strand = Plus / Minus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||||||||||||||| || ||||||| || || |||||||||||||| ||||
Sbjct: 105 tccatgtagaaccgagcccggaaggctgccagatgggcatagtatgcaggaggaacaatc 46
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgttt 503
| || ||||| ||||| || ||||| |||||||| |||||||||
Sbjct: 45 gatacagagcgggtgcatcgagcatacgtgtagcacaggttgttt 1
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 71.9 bits (36), Expect = 2e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 576 gttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 369 gttcccttgatcccagcatggctacagaggaagaaatcaaactctgttgggtggca 314
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 65.9 bits (33), Expect = 1e-009
Identities = 174/221 (78%)
Strand = Plus / Plus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||| ||||||||||| || |||||||| ||||| || ||||| ||||| ||||
Sbjct: 335 tccatgtaaaaccgagcccggaaggctgccaaatgtgcataatatgctggaggcacaatt 394
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatt 518
| || ||||| ||||||| ||||| |||||||| | |||||||| | | ||||
Sbjct: 395 gatacagagcgggtgcacctagcatacgtgtagcacaagttgtttgttagagtttgcaac 454
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|| || || ||||| |||||||||||||| || || || | |||||||| | || |||
Sbjct: 455 tcatcagcagtgaacttgttctcatcccatagtacgtgataatgagcaggacggcttgtt 514
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactc 619
||||| || ||||| || ||||| | |||||||||||||||
Sbjct: 515 ccctgaatgccagcgtggctacacaagtagaaatcaaactc 555
>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
3-PRIME, mRNA sequence
Length = 603
Score = 60.0 bits (30), Expect = 9e-008
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 399 tccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
|||||||| ||||||||||| || |||||||| ||||| || ||||| ||||| ||||
Sbjct: 402 tccatgtaaaaccgagcccggaaggctgccaaatgtgcataatatgctggaggcacaatt 461
Query: 459 caaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| || ||||| ||||||| ||||| |||||||| | ||||||||
Sbjct: 462 gatacagagcgggtgcacctagcatacgtgtagcacaagttgtttg 507
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 52.0 bits (26), Expect = 2e-005
Identities = 152/194 (78%)
Strand = Plus / Minus
Query: 426 gccaagtgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataa 485
|||| ||| |||||||| |||||||| |||||| | || ||||| ||||| || || ||
Sbjct: 661 gccaggtgagcgtagtaggcaggaggaacaacagagacagagcgagtgcatcgagcgtat 602
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||| | | |||||| | || || |||||| ||| |||||
Sbjct: 601 gtgtagcacaggttgttggtgagctgctgcagcccatcggcagtgaaaccgttttcatcg 542
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctggattccagcatgactacagagg 605
||||||||||| |||||| || || || || ||||| || || ||||| ||||| |||
Sbjct: 541 aagaggacatggtagtgagttggtctgcttgtgccctgaataccggcatggctacacagg 482
Query: 606 tagaaatcaaactc 619
||||||||||||||
Sbjct: 481 tagaaatcaaactc 468
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 52.0 bits (26), Expect = 2e-005
Identities = 152/194 (78%)
Strand = Plus / Minus
Query: 426 gccaagtgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataa 485
|||| ||| |||||||| |||||||| |||||| | || ||||| ||||| || || ||
Sbjct: 212 gccaggtgagcgtagtaggcaggaggaacaacagagacagagcgagtgcatcgagcgtat 153
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
|||||||| |||||||| | | |||||| | || || |||||| ||| |||||
Sbjct: 152 gtgtagcacaggttgttggtgagctgctgcagcccatcggcagtgaaaccgttttcatcg 93
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctggattccagcatgactacagagg 605
||||||||||| |||||| || || || || ||||| || || ||||| ||||| |||
Sbjct: 92 aagaggacatggtagtgagttggtctgcttgtgccctgaataccggcatggctacacagg 33
Query: 606 tagaaatcaaactc 619
||||||||||||||
Sbjct: 32 tagaaatcaaactc 19
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 50.1 bits (25), Expect = 9e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 547 agaggacatgggagtgagcaggcctactcgttccctggattccagcatgactacagaggt 606
||||||||||| |||||| || || || || ||||| || || ||||| ||||| ||||
Sbjct: 391 agaggacatggtagtgagttggtctgcttgtgccctgaataccggcatggctacacaggt 332
Query: 607 agaaatcaaactc 619
|||||||||||||
Sbjct: 331 agaaatcaaactc 319
>gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 3', mRNA sequence
Length = 463
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 531 aaattgttctcatcccagaggacatgg 557
||||||||||||||||| |||||||||
Sbjct: 428 aaattgttctcatcccaaaggacatgg 454
Score = 42.1 bits (21), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 396 ggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggaca 455
|||||||||||||||||||| || || || || | ||| || |||||||| ||||| |||
Sbjct: 293 ggttccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcaca 352
Query: 456 a 456
|
Sbjct: 353 a 353
>gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 5', mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 396 ggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggaca 455
|||||||||||||||||||| || || || || | ||| || |||||||| ||||| |||
Sbjct: 157 ggttccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcaca 98
Query: 456 a 456
|
Sbjct: 97 a 97
>gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 3', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.085
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 397 gttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaa 456
||||||||||||||||||| || || || || | ||| || |||||||| ||||| ||||
Sbjct: 469 gttccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaa 528
>emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragment; clone MWG0876.uni
Length = 486
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 284 tcagcagtagaacatcatccttttcac 310
||||||||||||||| | |||||||||
Sbjct: 51 tcagcagtagaacatgagccttttcac 77
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,807
Number of Sequences: 312970
Number of extensions: 50807
Number of successful extensions: 13887
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13856
Number of HSP's gapped (non-prelim): 29
length of query: 631
length of database: 175,134,539
effective HSP length: 19
effective length of query: 612
effective length of database: 169,188,109
effective search space: 103543122708
effective search space used: 103543122708
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)