BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. v... 402 e-110
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 351 3e-095
gb|CK122439.1|CK122439 BES1824103h01 BES1824 Hordeum vulgar... 291 3e-077
gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. v... 234 5e-060
gb|AL506751.1|AL506751 AL506751 Hordeum vulgare Barke devel... 151 6e-035
gb|AV833832.1|AV833832 AV833832 K. Sato unpublished cDNA li... 113 1e-023
gb|BU968630.1|BU968630 HB08B19r BC Hordeum vulgare subsp. v... 72 5e-011
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 62 5e-008
gb|AV836656.1|AV836656 AV836656 K. Sato unpublished cDNA li... 52 4e-005
gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedl... 48 7e-004
gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA li... 48 7e-004
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.042
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 42 0.042
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.17
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.17
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.17
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.17
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.17
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.17
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.17
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.17
>gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. vulgare cDNA clone HA17H16
5-PRIME, mRNA sequence
Length = 554
Score = 402 bits (203), Expect = e-110
Identities = 341/387 (88%)
Strand = Plus / Plus
Query: 770 gaacatgtggtttttgctgaatccacctggggatgcaacaatccatgtggaaaatgttga 829
|||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 11 gaacatgtggttcttgttgaatcctcctggggatgccacaatccatgttgaaaatgtgga 70
Query: 830 tgacttcaaatggttaaactcttcttactgccctgttctgaagcagcttgagtctgcagc 889
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||
Sbjct: 71 tgacttcaaatggttaaactcttcgtactgccctgttttgaagcagctcgagtctgcggc 130
Query: 890 catgaaagaatattatttcaaggctgatcgtccgaaaacactctctgctggttcttctaa 949
||||||||| || || || ||||| ||||||| ||||| ||||| || ||||| |||||
Sbjct: 131 catgaaagagtactactttaaggcggatcgtcaaaaaactctctccgccggttcctctaa 190
Query: 950 tctgaagtatcgaaacccaaaatatttgtccatgctcaatcatctaagattttacctccc 1009
|||||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 191 tctgaaataccgaaacccaaaatatctgtccatgctcaatcacttaagattttacctccc 250
Query: 1010 acaagtctatcccaagctgaataaaattcttttcctggatgatgatatagttgtccagag 1069
|||||||||||| ||| |||||||||| |||||||| |||||||| || || ||||| |
Sbjct: 251 acaagtctatcctaagttgaataaaatccttttcctcgatgatgacattgtggtccaaaa 310
Query: 1070 ggacctaactggactctgggaggttgatcttaatggaaatgtaaatggagccgtggaaac 1129
||| | |||||||| |||||||||||||||||||| |||||||| || || || |||||
Sbjct: 311 ggatttgactggactatgggaggttgatcttaatgggaatgtaaacggtgctgtagaaac 370
Query: 1130 atgtggagagagttttcaccgatttga 1156
|||||| |||||||| |||||||||||
Sbjct: 371 atgtggggagagtttccaccgatttga 397
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 351 bits (177), Expect = 3e-095
Identities = 303/345 (87%)
Strand = Plus / Plus
Query: 812 ccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgccctgttctgaa 871
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 11 ccatgttgaaaatgtggatgacttcaaatggttaaactcttcgtactgccctgttttgaa 70
Query: 872 gcagcttgagtctgcagccatgaaagaatattatttcaaggctgatcgtccgaaaacact 931
|||||| |||||||| ||||||||||| || || || ||||| ||||||| ||||| ||
Sbjct: 71 gcagctcgagtctgcggccatgaaagagtactactttaaggcggatcgtcaaaaaactct 130
Query: 932 ctctgctggttcttctaatctgaagtatcgaaacccaaaatatttgtccatgctcaatca 991
||| || ||||| ||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 131 ctccgccggttcctctaatctgaaataccgaaacccaaaatatctgtccatgctcaatca 190
Query: 992 tctaagattttacctcccacaagtctatcccaagctgaataaaattcttttcctggatga 1051
|||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||
Sbjct: 191 cttaagattttacctcccacaagtctatcctaagttgaataaaatccttttcctcgatga 250
Query: 1052 tgatatagttgtccagagggacctaactggactctgggaggttgatcttaatggaaatgt 1111
||| || || ||||| | ||| | |||||||| |||||||||||||||||||| |||||
Sbjct: 251 tgacattgtggtccaaaaggatttgactggactatgggaggttgatcttaatgggaatgt 310
Query: 1112 aaatggagccgtggaaacatgtggagagagttttcaccgatttga 1156
||| || || || ||||||||||| |||||||| |||||||||||
Sbjct: 311 aaacggtgctgtagaaacatgtggggagagtttccaccgatttga 355
>gb|CK122439.1|CK122439 BES1824103h01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H013 5-PRIME, mRNA sequence
Length = 653
Score = 291 bits (147), Expect = 3e-077
Identities = 263/299 (87%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 65 gcagcaggatgatgaagcgttagttaaacttgagaatgcaggtatcgaacgttcaaaagc 124
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||
Sbjct: 343 gcagcaggatgatgaagccctagttaaacttgagaatgcaggtattgagcgttcaaaggc 402
Query: 125 tgttgactctgctgtgctgggaaaatacagcatc-tggagacgtgaaaatgaaaatgaaa 183
||||| |||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct: 403 agttgattctgctgtgctgggaaaatatagttttatggagacgtgaaaatgaaaacgaga 462
Query: 184 aggcagattcaagggtccgtttgatgcgagatcaaatgatcatggccagaatatattctg 243
|||| ||| ||| || ||| ||||||| || ||||||||||||||||||||||| || |
Sbjct: 463 aggcggatgcaaatgttcgtctgatgcgggaccaaatgatcatggccagaatatactccg 522
Query: 244 ttcttgccaaatcgaggg-acaagcttgatctctatcaggagctgcttgcaaggctcaag 302
| ||||| ||||| |||| ||||||| ||||| |||| |||||| ||||| ||| |||||
Sbjct: 523 tgcttgctaaatccaggggacaagctcgatctttatcgggagctacttgccaggatcaag 582
Query: 303 gaaagccagcgatcccttggggaagctactgctgatgctgaacttcccaagagtgcttc 361
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 583 gaaagccagcgctcccttggggaagctactgctgatgctgaacttcctaagagtgcttc 641
>gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. vulgare cDNA clone HB25O06
5-PRIME, mRNA sequence
Length = 563
Score = 234 bits (118), Expect = 5e-060
Identities = 388/478 (81%)
Strand = Plus / Plus
Query: 591 gagaaaagaaagttcccaaatagtgagaacctggaaaatcctgatctttaccattatgct 650
|||||| | |||||||| | ||||| ||| |||||||||| || || ||||| |||||
Sbjct: 31 gagaaacggaagttcccgaggagtgaaaacttggaaaatccagagctctaccactatgca 90
Query: 651 cttttctcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgct 710
|||||||| |||||||| ||||| || || ||||| || |||||||||||||||||||||
Sbjct: 91 cttttctcagacaatgtcttggctgcctctgttgttgtaaactcaaccatcatgaatgct 150
Query: 711 aaggagcctgaaaaacatgtatttcatcttgttactgacaaactgaactttggggccatg 770
||||||||||| |||||||| || |||||||| || || || |||||||||| ||||||
Sbjct: 151 aaggagcctgagaaacatgttttccatcttgtgaccgataagttgaactttggagccatg 210
Query: 771 aacatgtggtttttgctgaatccacctggggatgcaacaatccatgtggaaaatgttgat 830
|||||||||||||||||||| |||||||| | || || |||||||| || ||||| |||
Sbjct: 211 aacatgtggtttttgctgaacccacctggcaaggccactatccatgttgagaatgtggat 270
Query: 831 gacttcaaatggttaaactcttcttactgccctgttctgaagcagcttgagtctgcagcc 890
|| || || ||||| ||||| || ||||| |||||| | || || ||||||| |||
Sbjct: 271 gagtttaagtggttgaactcatcatactgtcctgttttacgtcaactggagtctgttgcc 330
Query: 891 atgaaagaatattatttcaaggctgatcgtccgaaaacactctctgctggttcttctaat 950
|||||||| ||||||||||||||||| ||||| || || || || |||||||| ||
Sbjct: 331 atgaaagagtattatttcaaggctgaccgtcccgccactctttcagcaggttcttcaaac 390
Query: 951 ctgaagtatcgaaacccaaaatatttgtccatgctcaatcatctaagattttacctccca 1010
|| || || || ||||| || || | |||||||| || || | |||||||| ||||||
Sbjct: 391 ctaaaataccgcaaccccaagtacctctccatgctgaaccacttgagattttatctccca 450
Query: 1011 caagtctatcccaagctgaataaaattcttttcctggatgatgatatagttgtccaga 1068
|| ||||||| ||| || |||| || |||||||| |||||||| |||||||| ||||
Sbjct: 451 cagatctatccaaagttggataagatacttttcctcgatgatgacatagttgtgcaga 508
>gb|AL506751.1|AL506751 AL506751 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C08T 5',
mRNA sequence
Length = 691
Score = 151 bits (76), Expect = 6e-035
Identities = 216/262 (82%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 444 agagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcaccttc 503
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||
Sbjct: 362 agagcaatgcttcagtcagcagatgaacaggtcaggagcttgaagaagcagagtacattt 421
Query: 504 cttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgctta 563
||||||||| | || || ||||| || ||||| ||||||| || | || |||||||||
Sbjct: 422 cttagccagttggctgcaaagacgattccaaacagcatccactgcttgtctatgcgctta 481
Query: 564 acgattgattattatcttctctctccagagaaaagaaagttccc-aaatagtgagaacct 622
|| || ||||| ||||| || ||| |||||| | |||||||| | ||||| ||| |
Sbjct: 482 acaatagattactatctncttcctctggagaaacggaagttcccgagggagtgaaaactt 541
Query: 623 ggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcagt 682
||||||||| || || ||||| ||||| |||||||| |||||||| ||||| || || ||
Sbjct: 542 ggaaaatccagagctctaccactatgcacttttctcagacaatgtcttggctgcctctgt 601
Query: 683 tgtggtcaactcaaccatcatg 704
||| || |||||||||||||||
Sbjct: 602 tgttgtnaactcaaccatcatg 623
Score = 52.0 bits (26), Expect = 4e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 87 gttaaacttgagaatgcaggtatcgaacgttcaaaagctgttgactctgctgtgctggga 146
||||| || |||||||||| ||| || || ||||| ||||| || |||||||| || ||
Sbjct: 5 gttaagctggagaatgcagctattgagcgatcaaaggctgtagattctgctgtccttggg 64
Query: 147 aaatacagcatctggaga 164
||||||||||| ||||||
Sbjct: 65 aaatacagcatatggaga 82
>gb|AV833832.1|AV833832 AV833832 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags20k03, mRNA sequence
Length = 526
Score = 113 bits (57), Expect = 1e-023
Identities = 313/397 (78%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 754 tgaactttggggccatgaacatgtggtttttgctgaatccacctggggatgcaacaatcc 813
|||||||||| ||| |||||||||||||||||||||| |||||||| | || || ||||
Sbjct: 19 tgaactttggagcc-tgaacatgtggtttttgctgaacccacctggcaaggccactatcc 77
Query: 814 atgtggaaaatgttgatgacttcaaatggttaaactcttcttactgccctgttctgaagc 873
|||| || ||||| ||||| || || ||||| ||||| || ||||| |||||| | |
Sbjct: 78 atgttgagaatgtggatgagtttaagtggttgaactcatcatactgtcctgttttacgtc 137
Query: 874 agcttgagtctgcagccatgaaagaatattatttcaaggctgatcgtccgaaaacactct 933
| || ||||||| ||||||||||| ||||||||||||||||| ||||| || || |
Sbjct: 138 aactggagtctgttgccatgaaagagtattatttcaaggctgaccgtcccgccactcttt 197
Query: 934 ctgctggttcttctaatctgaagtatcgaaacccaaaatatttgtccatgctcaatcatc 993
| || |||||||| || || || || || ||||| || || | |||||||| || ||
Sbjct: 198 cagcaggttcttcaaacctaaaataccgcaaccccaagtacctctccatgctgaaccact 257
Query: 994 taagattttacctcccacaagtctatcccaagctgaataaaattcttttcctggatgatg 1053
| |||||||| |||||||| ||||||| ||| || |||| || |||||||| |||||||
Sbjct: 258 tgagattttatctcccacagatctatccaaagttggataagatacttttcctcgatgatg 317
Query: 1054 atatagttgtccagagggacctaactggactctgggaggttgatcttaatggaaatgtaa 1113
| |||||||| |||| || | || ||| | ||||| |||||||| ||||||| || |
Sbjct: 318 acatagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggtca 377
Query: 1114 atggagccgtggaaacatgtggagagagttttcaccg 1150
|||| || ||| || |||||||||||||| |||||
Sbjct: 378 atggtgcagtgtttacctgtggagagagtttccaccg 414
>gb|BU968630.1|BU968630 HB08B19r BC Hordeum vulgare subsp. vulgare cDNA clone HB08B19
5-PRIME, mRNA sequence
Length = 521
Score = 71.9 bits (36), Expect = 5e-011
Identities = 213/272 (78%)
Strand = Plus / Plus
Query: 879 gagtctgcagccatgaaagaatattatttcaaggctgatcgtccgaaaacactctctgct 938
||||||| ||||||||||| ||||||||||||||||| ||||| || || || ||
Sbjct: 47 gagtctgttgccatgaaagagtattatttcaaggctgaccgtcccgccactctttcagca 106
Query: 939 ggttcttctaatctgaagtatcgaaacccaaaatatttgtccatgctcaatcatctaaga 998
|||||||| || || || || || ||||| || || | |||||||| || || | |||
Sbjct: 107 ggttcttcaaacctaaaataccgcaaccccaagtacctctccatgctgaaccacttgaga 166
Query: 999 ttttacctcccacaagtctatcccaagctgaataaaattcttttcctggatgatgatata 1058
||||| |||||||| ||||||| ||| || |||| || |||||||| |||||||| |||
Sbjct: 167 ttttatctcccacagatctatccaaagttggataagatacttttcctcgatgatgacata 226
Query: 1059 gttgtccagagggacctaactggactctgggaggttgatcttaatggaaatgtaaatgga 1118
||||| |||| || | || ||| | ||||| |||||||| ||||||| || |||||
Sbjct: 227 gttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggtcaatggt 286
Query: 1119 gccgtggaaacatgtggagagagttttcaccg 1150
|| ||| || |||||||||||||| |||||
Sbjct: 287 gcagtgtttacctgtggagagagtttccaccg 318
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 61.9 bits (31), Expect = 5e-008
Identities = 124/155 (80%)
Strand = Plus / Plus
Query: 996 agattttacctcccacaagtctatcccaagctgaataaaattcttttcctggatgatgat 1055
|||||||| |||||||| ||||||| ||| || |||| || |||||||| ||||||||
Sbjct: 71 agattttatctcccacagatctatccaaagttggataagatacttttcctcgatgatgac 130
Query: 1056 atagttgtccagagggacctaactggactctgggaggttgatcttaatggaaatgtaaat 1115
|||||||| |||| || | || ||| | ||||| |||||||| ||||||| || |||
Sbjct: 131 atagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggtcaat 190
Query: 1116 ggagccgtggaaacatgtggagagagttttcaccg 1150
|| || ||| || |||||||||||||| |||||
Sbjct: 191 ggtgcagtgtttacctgtggagagagtttccaccg 225
>gb|AV836656.1|AV836656 AV836656 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 622
Score = 52.0 bits (26), Expect = 4e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 87 gttaaacttgagaatgcaggtatcgaacgttcaaaagctgttgactctgctgtgctggga 146
||||| || |||||||||| ||| || || ||||| ||||| || |||||||| || ||
Sbjct: 493 gttaagctggagaatgcagctattgagcgatcaaaggctgtagattctgctgtccttggg 552
Query: 147 aaatacagcatctggaga 164
||||||||||| ||||||
Sbjct: 553 aaatacagcatatggaga 570
>gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015H07f, mRNA sequence
Length = 767
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1020 cccaagctgaataaaattcttttcctggatgatgat 1055
||||||||| | || |||||||||||||||||||||
Sbjct: 468 cccaagctgcagaagattcttttcctggatgatgat 503
>gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 5', mRNA sequence
Length = 606
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1020 cccaagctgaataaaattcttttcctggatgatgat 1055
||||||||| | || |||||||||||||||||||||
Sbjct: 262 cccaagctgcagaagattcttttcctggatgatgat 297
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 340 cgtacctgcccgggcggccgc 360
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1035 attcttttcctggatgatgat 1055
|||||||||||||||||||||
Sbjct: 2 attcttttcctggatgatgat 22
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgc 10
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 271 gtacctgcccgggcggccgc 290
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgc 260
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-108, mRNA
sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 328 gtacctgcccgggcggccgc 347
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-159 similar
to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgc 281
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 334 gtacctgcccgggcggccgc 353
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgc 519
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgc 433
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-21 similar to
A. thaliana AtRer1A, Accession No. AY044321, mRNA
sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,450
Number of Sequences: 312970
Number of extensions: 114450
Number of successful extensions: 29551
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29511
Number of HSP's gapped (non-prelim): 38
length of query: 1208
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1189
effective length of database: 169,188,109
effective search space: 201164661601
effective search space used: 201164661601
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)