BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3173057.2.1
(1264 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU995743.1|BU995743 HM11D16r HM Hordeum vulgare subsp. v... 285 2e-075
gb|CA008506.1|CA008506 HU11C21r HU Hordeum vulgare subsp. v... 285 2e-075
gb|CA015084.1|CA015084 HT13D10r HT Hordeum vulgare subsp. v... 285 2e-075
gb|CA007710.1|CA007710 HU08N05r HU Hordeum vulgare subsp. v... 276 2e-072
gb|BI950636.1|BI950636 HVSMEl0021N14f Hordeum vulgare spike... 274 7e-072
gb|BQ472689.1|BQ472689 HB01M15r BC Hordeum vulgare subsp. v... 264 6e-069
gb|BU979600.1|BU979600 HA16K22r HA Hordeum vulgare subsp. v... 254 6e-066
gb|BG414929.1|BG414929 HVSMEk0004E19f Hordeum vulgare testa... 252 2e-065
gb|AV923091.1|AV923091 AV923091 K. Sato unpublished cDNA li... 252 2e-065
gb|AF134153.1|AF134153 Hordeum vulgare cysteine protease mR... 250 1e-064
gb|CA018842.1|CA018842 HV09N03r HV Hordeum vulgare subsp. v... 248 4e-064
gb|CK122888.1|CK122888 BES1824101b11 BES1824 Hordeum vulgar... 240 9e-062
gb|BU983904.1|BU983904 HA31G11r HA Hordeum vulgare subsp. v... 236 1e-060
gb|AV912750.1|AV912750 AV912750 K. Sato unpublished cDNA li... 228 4e-058
gb|AV927800.1|AV927800 AV927800 K. Sato unpublished cDNA li... 228 4e-058
gb|AV930297.1|AV930297 AV930297 K. Sato unpublished cDNA li... 228 4e-058
gb|BQ472247.1|BQ472247 HV04N08r HV Hordeum vulgare subsp. v... 228 4e-058
gb|CA001173.1|CA001173 HS05B16u HS Hordeum vulgare subsp. v... 228 4e-058
gb|CA005734.1|CA005734 HU08N05u HU Hordeum vulgare subsp. v... 228 4e-058
gb|CA028921.1|CA028921 HZ63K07r HZ Hordeum vulgare subsp. v... 228 4e-058
gb|CB875858.1|CB875858 HX09I24w HX Hordeum vulgare subsp. v... 228 4e-058
gb|CB881897.1|CB881897 HM11D16w HM Hordeum vulgare subsp. v... 228 4e-058
gb|BQ756369.1|BQ756369 EBem08_SQ001_L07_R embryo, 40 DPA, n... 226 1e-057
gb|BQ464939.1|BQ464939 HU02D03r HU Hordeum vulgare subsp. v... 212 2e-053
gb|CA012821.1|CA012821 HT06I19r HT Hordeum vulgare subsp. v... 212 2e-053
emb|AJ278817.1|HVU278817 Hordeum vulgare partial mRNA for p... 204 5e-051
gb|AV927821.1|AV927821 AV927821 K. Sato unpublished cDNA li... 200 8e-050
gb|BG414819.1|BG414819 HVSMEk0003N11f Hordeum vulgare testa... 198 3e-049
gb|BQ663336.1|BQ663336 HU02D03u HU Hordeum vulgare subsp. v... 192 2e-047
gb|BQ664777.1|BQ664777 HV04N08u HV Hordeum vulgare subsp. v... 192 2e-047
gb|CA005287.1|CA005287 HU11C21u HU Hordeum vulgare subsp. v... 192 2e-047
gb|AJ461874.1|AJ461874 AJ461874 S00002 Hordeum vulgare subs... 182 2e-044
gb|BQ464940.1|BQ464940 HU02D04r HU Hordeum vulgare subsp. v... 180 7e-044
gb|BQ465404.1|BQ465404 HU03I21r HU Hordeum vulgare subsp. v... 180 7e-044
gb|AL509304.1|AL509304 AL509304 Hordeum vulgare Barke devel... 178 3e-043
gb|CA001622.1|CA001622 HS05B16r HS Hordeum vulgare subsp. v... 174 5e-042
gb|CA027103.1|CA027103 HZ57O09r HZ Hordeum vulgare subsp. v... 174 5e-042
gb|CA031300.1|CA031300 HX09I24r HX Hordeum vulgare subsp. v... 174 5e-042
gb|BG416013.1|BG416013 HVSMEk0009G22f Hordeum vulgare testa... 170 7e-041
gb|BQ758701.1|BQ758701 EBma07_SQ002_F15_R maternal, 21 DPA,... 147 1e-033
gb|BQ760974.1|BQ760974 EBro03_SQ004_A03_R root, 3 week, wat... 147 1e-033
gb|AJ434822.1|AJ434822 AJ434822 S00002 Hordeum vulgare subs... 137 1e-030
gb|BM370126.2|BM370126 EBro08_SQ003_B07_R root, 3 week, dro... 137 1e-030
gb|AL509288.1|AL509288 AL509288 Hordeum vulgare Barke devel... 135 4e-030
gb|BQ663674.1|BQ663674 HU03I21u HU Hordeum vulgare subsp. v... 123 2e-026
gb|AL511972.1|AL511972 AL511972 Hordeum vulgare Barke devel... 117 9e-025
gb|CA017219.1|CA017219 HV14C24u HV Hordeum vulgare subsp. v... 109 2e-022
gb|CA020048.1|CA020048 HV14C24r HV Hordeum vulgare subsp. v... 109 2e-022
gb|BQ663337.1|BQ663337 HU02D04u HU Hordeum vulgare subsp. v... 90 2e-016
gb|BG310007.1|BG310007 HVSMEc0015P24f Hordeum vulgare seedl... 84 1e-014
gb|AL505180.1|AL505180 AL505180 Hordeum vulgare Barke roots... 78 8e-013
gb|AV836677.1|AV836677 AV836677 K. Sato unpublished cDNA li... 78 8e-013
gb|BI778206.2|BI778206 EBro07_SQ002_I12_R root, 3 week, red... 74 1e-011
gb|CB859383.1|CB859383 HI10E19w HI Hordeum vulgare subsp. v... 74 1e-011
gb|AV923112.1|AV923112 AV923112 K. Sato unpublished cDNA li... 72 5e-011
gb|BF256720.2|BF256720 HVSMEf0010N02f Hordeum vulgare seedl... 66 3e-009
gb|BM815947.1|BM815947 HC01D05_T3.ab1 HC Hordeum vulgare su... 66 3e-009
gb|BJ470862.1|BJ470862 BJ470862 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ472478.1|BJ472478 BJ472478 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ472733.1|BJ472733 BJ472733 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ472765.1|BJ472765 BJ472765 K. Sato unpublished cDNA li... 66 3e-009
gb|BJ470567.1|BJ470567 BJ470567 K. Sato unpublished cDNA li... 60 2e-007
gb|BJ470713.1|BJ470713 BJ470713 K. Sato unpublished cDNA li... 60 2e-007
gb|CA005391.1|CA005391 HU10K13u HU Hordeum vulgare subsp. v... 60 2e-007
gb|AL504002.1|AL504002 AL504002 Hordeum vulgare Barke roots... 58 7e-007
gb|AL505477.1|AL505477 AL505477 Hordeum vulgare Barke roots... 56 3e-006
gb|BF264622.1|BF264622 HV_CEa0009O18f Hordeum vulgare seedl... 56 3e-006
gb|BF267712.2|BF267712 HV_CEa0018K21f Hordeum vulgare seedl... 56 3e-006
gb|AF134152.1|AF134152 Hordeum vulgare cysteine protease mR... 56 3e-006
gb|BE420653.1|BE420653 HWM001.B06 ITEC HWM Barley Leaf Libr... 54 1e-005
gb|AL501769.1|AL501769 AL501769 Hordeum vulgare Barke roots... 54 1e-005
gb|BI959700.1|BI959700 HVSMEn0020N17f Hordeum vulgare rachi... 54 1e-005
gb|BJ464204.1|BJ464204 BJ464204 K. Sato unpublished cDNA li... 54 1e-005
gb|CA020367.1|CA020367 HZ36B11r HZ Hordeum vulgare subsp. v... 54 1e-005
gb|CA024346.1|CA024346 HZ49A22r HZ Hordeum vulgare subsp. v... 54 1e-005
gb|CA024413.1|CA024413 HZ49D23r HZ Hordeum vulgare subsp. v... 54 1e-005
gb|CA028123.1|CA028123 HZ61B02r HZ Hordeum vulgare subsp. v... 54 1e-005
gb|CB878309.1|CB878309 HP08B01T HP Hordeum vulgare subsp. v... 54 1e-005
gb|AL508065.1|AL508065 AL508065 Hordeum vulgare Barke devel... 52 5e-005
gb|AL508750.1|AL508750 AL508750 Hordeum vulgare Barke devel... 52 5e-005
gb|AL509054.1|AL509054 AL509054 Hordeum vulgare Barke devel... 52 5e-005
gb|BF621203.3|BF621203 HVSMEa0006A11f Hordeum vulgare seedl... 52 5e-005
gb|BF254700.2|BF254700 HVSMEf0004M09f Hordeum vulgare seedl... 52 5e-005
gb|BF255458.2|BF255458 HVSMEf0006O15f Hordeum vulgare seedl... 52 5e-005
gb|BF260192.2|BF260192 HVSMEf0021F15f Hordeum vulgare seedl... 52 5e-005
gb|BG365631.1|BG365631 HVSMEi0003H23f Hordeum vulgare 20 DA... 52 5e-005
gb|BI954262.1|BI954262 HVSMEm0016O06f Hordeum vulgare green... 52 5e-005
gb|BF262249.2|BF262249 HV_CEa0003D23f Hordeum vulgare seedl... 52 5e-005
gb|BF263326.2|BF263326 HV_CEa0006H07f Hordeum vulgare seedl... 52 5e-005
gb|BF264359.2|BF264359 HV_CEa0009D10f Hordeum vulgare seedl... 52 5e-005
gb|BF630201.3|BF630201 HVSMEb0008E18f Hordeum vulgare seedl... 52 5e-005
gb|BF258336.3|BF258336 HVSMEf0015H07f Hordeum vulgare seedl... 52 5e-005
gb|BG367222.2|BG367222 HVSMEi0011F17f Hordeum vulgare 20 DA... 52 5e-005
gb|BF264420.2|BF264420 HV_CEa0009G02f Hordeum vulgare seedl... 52 5e-005
gb|BE519597.3|BE519597 HV_CEb0016F05f Hordeum vulgare seedl... 52 5e-005
gb|AV923635.1|AV923635 AV923635 K. Sato unpublished cDNA li... 52 5e-005
gb|BM816472.1|BM816472 HB106F05_SK.ab1 HB Hordeum vulgare s... 52 5e-005
gb|AJ460628.1|AJ460628 AJ460628 S00002 Hordeum vulgare subs... 52 5e-005
gb|BQ462837.1|BQ462837 HI02C14r HI Hordeum vulgare subsp. v... 52 5e-005
gb|BQ462876.1|BQ462876 HI02E17r HI Hordeum vulgare subsp. v... 52 5e-005
gb|BM098307.2|BM098307 EBem08_SQ002_B14_R embryo, 40 DPA, n... 52 5e-005
gb|BQ768365.1|BQ768365 EBro08_SQ011_B17_R root, 3 week, dro... 52 5e-005
gb|BU995263.1|BU995263 HM09L08r HM Hordeum vulgare subsp. v... 52 5e-005
gb|BU997156.1|BU997156 HI07B15r HI Hordeum vulgare subsp. v... 52 5e-005
gb|CA028010.1|CA028010 HZ60L15r HZ Hordeum vulgare subsp. v... 52 5e-005
gb|CB876962.1|CB876962 HP03B02T HP Hordeum vulgare subsp. v... 52 5e-005
tpe|BN000093.1|HVA000093 TPA: Hordeum vulgare mRNA for a se... 52 5e-005
gb|BI953545.1|BI953545 HVSMEm0013C14f Hordeum vulgare green... 50 2e-004
gb|BI956727.1|BI956727 HVSMEn0005A04f Hordeum vulgare rachi... 48 7e-004
gb|BF617516.2|BF617516 HVSMEc0017M06f Hordeum vulgare seedl... 46 0.003
gb|BF256370.2|BF256370 HVSMEf0009G08f Hordeum vulgare seedl... 46 0.003
gb|BG415364.1|BG415364 HVSMEk0006D05f Hordeum vulgare testa... 46 0.003
gb|BM098954.2|BM098954 EBpi05_SQ002_I16_R pistil, 8 DPA, no... 46 0.003
gb|CB884105.1|CB884105 HZ40M21r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB884116.1|CB884116 HZ50C14r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB884122.1|CB884122 HZ51O05r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB884128.1|CB884128 HZ55P09r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB884132.1|CB884132 HZ57N15r HZ Hordeum vulgare subsp. v... 46 0.003
gb|AL504152.1|AL504152 AL504152 Hordeum vulgare Barke roots... 44 0.011
gb|BF625661.2|BF625661 HVSMEa0013C18f Hordeum vulgare seedl... 44 0.011
gb|BF624099.3|BF624099 HVSMEa0009I02f Hordeum vulgare seedl... 44 0.011
gb|BF256372.2|BF256372 HVSMEf0009G12f Hordeum vulgare seedl... 44 0.011
gb|BF256657.2|BF256657 HVSMEf0010J23f Hordeum vulgare seedl... 44 0.011
gb|BI951599.1|BI951599 HVSMEm0001J09f Hordeum vulgare green... 44 0.011
gb|BF629685.3|BF629685 HVSMEb0013C10f Hordeum vulgare seedl... 44 0.011
gb|BG365210.2|BG365210 HVSMEi0001M14f Hordeum vulgare 20 DA... 44 0.011
gb|BG365693.2|BG365693 HVSMEi0003M06f Hordeum vulgare 20 DA... 44 0.011
gb|BF265368.3|BF265368 HV_CEa0011M12f Hordeum vulgare seedl... 44 0.011
gb|BE558276.2|BE558276 HV_CEb0017A19f Hordeum vulgare seedl... 44 0.011
gb|AV925389.1|AV925389 AV925389 K. Sato unpublished cDNA li... 44 0.011
gb|BJ470509.1|BJ470509 BJ470509 K. Sato unpublished cDNA li... 44 0.011
gb|BJ471723.1|BJ471723 BJ471723 K. Sato unpublished cDNA li... 44 0.011
gb|BQ467976.1|BQ467976 HR01I12r HR Hordeum vulgare subsp. v... 44 0.011
gb|BQ471145.1|BQ471145 HV01D01T HV Hordeum vulgare subsp. v... 44 0.011
gb|BQ471792.1|BQ471792 HV03H22r HV Hordeum vulgare subsp. v... 44 0.011
gb|CA008921.1|CA008921 HU12I16r HU Hordeum vulgare subsp. v... 44 0.011
gb|CA019917.1|CA019917 HV13L09r HV Hordeum vulgare subsp. v... 44 0.011
gb|CA025023.1|CA025023 HZ51A03r HZ Hordeum vulgare subsp. v... 44 0.011
gb|CB882606.1|CB882606 HL02F15w HL Hordeum vulgare subsp. v... 44 0.011
emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cystein... 44 0.011
emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cystein... 44 0.011
gb|BE411632.1|BE411632 ISC007.F05F990709 ITEC ISC Barley Le... 42 0.044
gb|BE421352.1|BE421352 HWM008.D09 ITEC HWM Barley Leaf Libr... 42 0.044
gb|BE422186.1|BE422186 HWM021cC.06r ITEC HWM Barley Leaf Li... 42 0.044
gb|AL503956.1|AL503956 AL503956 Hordeum vulgare Barke roots... 42 0.044
gb|BF254259.2|BF254259 HVSMEf0003H13f Hordeum vulgare seedl... 42 0.044
gb|BI954523.1|BI954523 HVSMEm0018G18f Hordeum vulgare green... 42 0.044
gb|BF267713.2|BF267713 HV_CEa0018K22f Hordeum vulgare seedl... 42 0.044
gb|BG415730.2|BG415730 HVSMEk0007J21f Hordeum vulgare testa... 42 0.044
gb|BG415734.2|BG415734 HVSMEk0007K06f Hordeum vulgare testa... 42 0.044
gb|AV932221.1|AV932221 AV932221 K. Sato unpublished cDNA li... 42 0.044
gb|AV932488.1|AV932488 AV932488 K. Sato unpublished cDNA li... 42 0.044
gb|AV933431.1|AV933431 AV933431 K. Sato unpublished cDNA li... 42 0.044
gb|BM815999.1|BM815999 HB105H04_SK.ab1 HB Hordeum vulgare s... 42 0.044
gb|BJ471353.1|BJ471353 BJ471353 K. Sato unpublished cDNA li... 42 0.044
gb|BJ473964.1|BJ473964 BJ473964 K. Sato unpublished cDNA li... 42 0.044
gb|BJ475216.1|BJ475216 BJ475216 K. Sato unpublished cDNA li... 42 0.044
gb|BJ475370.1|BJ475370 BJ475370 K. Sato unpublished cDNA li... 42 0.044
gb|BJ476468.1|BJ476468 BJ476468 K. Sato unpublished cDNA li... 42 0.044
gb|BJ476694.1|BJ476694 BJ476694 K. Sato unpublished cDNA li... 42 0.044
gb|BQ469015.1|BQ469015 HM03B21r HM Hordeum vulgare subsp. v... 42 0.044
gb|BQ470854.1|BQ470854 HX04D21r HX Hordeum vulgare subsp. v... 42 0.044
gb|BM096938.2|BM096938 EBpi07_SQ001_N17_R pistil, 12 DPA, n... 42 0.044
gb|BU968975.1|BU968975 HB10C12r BC Hordeum vulgare subsp. v... 42 0.044
gb|CA025775.1|CA025775 HZ53B18r HZ Hordeum vulgare subsp. v... 42 0.044
gb|CB882596.1|CB882596 HL02F04w HL Hordeum vulgare subsp. v... 42 0.044
gb|AL507924.1|AL507924 AL507924 Hordeum vulgare Barke devel... 40 0.17
gb|AL509061.1|AL509061 AL509061 Hordeum vulgare Barke devel... 40 0.17
gb|BF624315.2|BF624315 HVSMEa0013M13f Hordeum vulgare seedl... 40 0.17
gb|BE231318.1|BE231318 HVSMEg0019O09f Hordeum vulgare pre-a... 40 0.17
gb|BG300972.1|BG300972 HVSMEb0019B24f Hordeum vulgare seedl... 40 0.17
gb|BG300997.1|BG300997 HVSMEb0019D08f Hordeum vulgare seedl... 40 0.17
gb|BF254853.2|BF254853 HVSMEf0005D19f Hordeum vulgare seedl... 40 0.17
gb|BG365646.1|BG365646 HVSMEi0003J08f Hordeum vulgare 20 DA... 40 0.17
gb|BF263715.2|BF263715 HV_CEa0007H14f Hordeum vulgare seedl... 40 0.17
gb|BI960255.1|BI960255 HVSMEn0023O21f Hordeum vulgare rachi... 40 0.17
gb|AV925638.1|AV925638 AV925638 K. Sato unpublished cDNA li... 40 0.17
gb|AV925743.1|AV925743 AV925743 K. Sato unpublished cDNA li... 40 0.17
gb|AV926642.1|AV926642 AV926642 K. Sato unpublished cDNA li... 40 0.17
gb|AV930546.1|AV930546 AV930546 K. Sato unpublished cDNA li... 40 0.17
gb|AV933334.1|AV933334 AV933334 K. Sato unpublished cDNA li... 40 0.17
gb|AV935061.1|AV935061 AV935061 K. Sato unpublished cDNA li... 40 0.17
gb|AV935368.1|AV935368 AV935368 K. Sato unpublished cDNA li... 40 0.17
gb|AV935883.1|AV935883 AV935883 K. Sato unpublished cDNA li... 40 0.17
gb|BJ448752.1|BJ448752 BJ448752 K. Sato unpublished cDNA li... 40 0.17
gb|BJ449483.1|BJ449483 BJ449483 K. Sato unpublished cDNA li... 40 0.17
gb|BJ451093.1|BJ451093 BJ451093 K. Sato unpublished cDNA li... 40 0.17
gb|BJ453656.1|BJ453656 BJ453656 K. Sato unpublished cDNA li... 40 0.17
gb|BJ458598.1|BJ458598 BJ458598 K. Sato unpublished cDNA li... 40 0.17
gb|BJ459315.1|BJ459315 BJ459315 K. Sato unpublished cDNA li... 40 0.17
gb|BJ461198.1|BJ461198 BJ461198 K. Sato unpublished cDNA li... 40 0.17
gb|BJ461888.1|BJ461888 BJ461888 K. Sato unpublished cDNA li... 40 0.17
gb|BJ463302.1|BJ463302 BJ463302 K. Sato unpublished cDNA li... 40 0.17
gb|BJ475243.1|BJ475243 BJ475243 K. Sato unpublished cDNA li... 40 0.17
gb|BJ476735.1|BJ476735 BJ476735 K. Sato unpublished cDNA li... 40 0.17
gb|BQ665576.1|BQ665576 HX04D21u HX Hordeum vulgare subsp. v... 40 0.17
gb|BM443224.2|BM443224 EBro02_SQ003_D08_R root, 3 week, hyd... 40 0.17
gb|BQ761631.1|BQ761631 EBem10_SQ001_I08_R embryo, 2 Day ger... 40 0.17
gb|BU984096.1|BU984096 HA31P15r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU985256.1|BU985256 HF06J12r HF Hordeum vulgare subsp. v... 40 0.17
gb|BU985786.1|BU985786 HF08J22r HF Hordeum vulgare subsp. v... 40 0.17
gb|BU989063.1|BU989063 HF19K14r HF Hordeum vulgare subsp. v... 40 0.17
gb|BU998450.1|BU998450 HI11B15r HI Hordeum vulgare subsp. v... 40 0.17
gb|CA027924.1|CA027924 HZ60H08r HZ Hordeum vulgare subsp. v... 40 0.17
gb|CB877220.1|CB877220 HP04A03T HP Hordeum vulgare subsp. v... 40 0.17
gb|CB883471.1|CB883471 HQ02F20w HQ Hordeum vulgare subsp. v... 40 0.17
gb|CV057376.1|CV057376 BNEL27b2 Barley EST endosperm librar... 40 0.17
gb|CK125381.1|CK125381 BES1824107n15 BES1824 Hordeum vulgar... 40 0.17
>gb|BU995743.1|BU995743 HM11D16r HM Hordeum vulgare subsp. vulgare cDNA clone HM11D16
5-PRIME, mRNA sequence
Length = 642
Score = 285 bits (144), Expect = 2e-075
Identities = 372/448 (83%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 523 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 464
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 463 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 404
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 403 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 344
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 343 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 284
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttct 848
||||||||||||| || || ||||||||||| || || || |||||||||||||||||||
Sbjct: 283 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttct 224
Query: 849 gcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctgg 908
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| | |
Sbjct: 223 gcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttcg 164
Query: 909 catttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcgg 968
| ||||||||| | || || | |||||||||||| ||||||||||||||||||| |
Sbjct: 163 cgtttttcctgaggacatcacatctgccgtccacggctttgtaagggtagtcatcttcag 104
Query: 969 tatcgatgcccccgttctttatgatgaa 996
|||| ||||| |||||||||||||||||
Sbjct: 103 tatcaatgccaccgttctttatgatgaa 76
Score = 79.8 bits (40), Expect = 2e-013
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 445 gaagccaaacgcgcagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagac 504
|||||| |||| |||||||||||||||||| || | ||| ||||||||||||||||||||
Sbjct: 642 gaagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagac 583
Query: 505 attgtcaggggc 516
| |||||||||
Sbjct: 582 gtggtcaggggc 571
>gb|CA008506.1|CA008506 HU11C21r HU Hordeum vulgare subsp. vulgare cDNA clone HU11C21
5-PRIME, mRNA sequence
Length = 481
Score = 285 bits (144), Expect = 2e-075
Identities = 372/448 (83%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 460 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 401
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 400 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 341
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 340 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 281
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 280 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 221
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttct 848
||||||||||||| || || ||||||||||| || || || |||||||||||||||||||
Sbjct: 220 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttct 161
Query: 849 gcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctgg 908
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| | |
Sbjct: 160 gcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttcg 101
Query: 909 catttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcgg 968
| ||||||||| | || || | |||||||||||| ||||||||||||||||||| |
Sbjct: 100 cgtttttcctgaggacatcacatctgccgtccacggctttgtaagggtagtcatcttcag 41
Query: 969 tatcgatgcccccgttctttatgatgaa 996
|||| ||||| |||||||||||||||||
Sbjct: 40 tatcaatgccaccgttctttatgatgaa 13
>gb|CA015084.1|CA015084 HT13D10r HT Hordeum vulgare subsp. vulgare cDNA clone HT13D10
5-PRIME, mRNA sequence
Length = 559
Score = 285 bits (144), Expect = 2e-075
Identities = 372/448 (83%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 537 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 478
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 477 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 418
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 417 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 358
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 357 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 298
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttct 848
||||||||||||| || || ||||||||||| || || || |||||||||||||||||||
Sbjct: 297 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttct 238
Query: 849 gcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctgg 908
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| | |
Sbjct: 237 gcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttcg 178
Query: 909 catttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcgg 968
| ||||||||| | || || | |||||||||||| ||||||||||||||||||| |
Sbjct: 177 cgtttttcctgaggacatcacatctgccgtccacggctttgtaagggtagtcatcttcag 118
Query: 969 tatcgatgcccccgttctttatgatgaa 996
|||| ||||| |||||||||||||||||
Sbjct: 117 tatcaatgccaccgttctttatgatgaa 90
>gb|CA007710.1|CA007710 HU08N05r HU Hordeum vulgare subsp. vulgare cDNA clone HU08N05
5-PRIME, mRNA sequence
Length = 552
Score = 276 bits (139), Expect = 2e-072
Identities = 343/411 (83%)
Strand = Plus / Minus
Query: 586 catcatcgcgatcccgcacttcccagtgctggcgttaacgttcctctccatacggatgta 645
|||||| || ||||||||||||||| || | |||| | ||| | |||||| |||| |||
Sbjct: 547 catcatggctatcccgcacttcccactggtcacgttgatgttgcgctccatgcggaggta 488
Query: 646 accagcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgtt 705
|||||||| ||||| || || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 487 cccagcctctccccagtttggaccccatgagttgcggacaatccagtagtccttgccgtt 428
Query: 706 ctcggcgccgtagccgaccgcgacgacaccatggtcaaggttcgtggtgcagcttccgct 765
||| | ||| ||||| || || || ||||||||||| || | ||| || ||||| ||
Sbjct: 427 ctcagtgccatagccaacagcaaccacaccatggtcgagttgtgtgccacaccttccact 368
Query: 766 gaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaac 825
||||||||| || | ||||||||||||||||||||| || || ||||||||||| || ||
Sbjct: 367 gaagacaccggaatggtagagctggaactcccggcctccagcttcaatggcaacactcac 308
Query: 826 tggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaaa 885
|| |||||||||||||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 307 ggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggacatcttcaaa 248
Query: 886 gccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccgtccacggc 945
|||||| |||||||| ||| | || ||||||||| | || || | |||||||||||
Sbjct: 247 gccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccgtccacggc 188
Query: 946 tctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 187 tttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 137
>gb|BI950636.1|BI950636 HVSMEl0021N14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021N14f, mRNA sequence
Length = 882
Score = 274 bits (138), Expect = 7e-072
Identities = 360/434 (82%)
Strand = Plus / Minus
Query: 563 cccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcccagtgctggcgtta 622
|||||||| || ||||| || | |||||| | ||||||||||||||| || | ||||
Sbjct: 661 cccttcttggtggggtacgatgacatcatggtaatcccgcacttcccactggtcacgttg 602
Query: 623 acgttcctctccatacggatgtaaccagcctcgccccacttcgggccccacgagttgcgg 682
| ||| | |||||| |||| ||| |||||||| ||||| || || ||||| |||||||||
Sbjct: 601 atgttgcgctccatgcggaggtacccagcctctccccagtttggaccccatgagttgcgg 542
Query: 683 acgatccagtagtccttcccgttctcggcgccgtagccgaccgcgacgacaccatggtca 742
|| |||||||||||||| |||||||| | ||| ||||| || || || |||||||||||
Sbjct: 541 acaatccagtagtccttgccgttctcagtgccatagccaacagcaaccacaccatggtcg 482
Query: 743 aggttcgtggtgcagcttccgctgaagacacccgatttgtagagctggaactcccggcca 802
|| | ||| || ||||| ||||||||||| || | |||||||||||||||||||||
Sbjct: 481 agttgtgtgccacaccttccactgaagacaccggaatggtagagctggaactcccggcct 422
Query: 803 ccggcctcaatggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcg 862
|| || ||||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct: 421 ccagcttcaatggcaacactcacggggtggtgagcaaccgccttctgcagcgatttctcg 362
Query: 863 tcgttctcaggcacatcttcaaagccatcgatgctcacaaccctggcatttttcctgttc 922
|| || ||||| ||||||||||||||||| |||||||| ||| | || |||||||||
Sbjct: 361 tcattttcagggacatcttcaaagccatcaatgctcaccaccttcgcgtttttcctgagg 302
Query: 923 atgtcgcacttcccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccg 982
| || || | |||||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 301 acatcacatctgccgtccacggctttgtaagggtagtcatcttcagtatcaatgccaccg 242
Query: 983 ttctttatgatgaa 996
||||||||||||||
Sbjct: 241 ttctttatgatgaa 228
Score = 168 bits (85), Expect = 3e-040
Identities = 148/169 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 169 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 110
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 109 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 50
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagct 1223
||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 49 acgggggcgacggcgcccttctccctccagtcgacgccctccggcagct 1
>gb|BQ472689.1|BQ472689 HB01M15r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M15
5-PRIME, mRNA sequence
Length = 682
Score = 264 bits (133), Expect = 6e-069
Identities = 361/437 (82%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 446 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 387
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 386 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 327
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 326 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 267
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 266 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 207
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttct 848
||||||||||||| || || ||||||||||| || || || |||||||||||||||||||
Sbjct: 206 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttct 147
Query: 849 gcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctgg 908
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| | |
Sbjct: 146 gcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttcg 87
Query: 909 catttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcgg 968
| ||||||||| | || || | |||||||||||| ||||||||||||||||||| |
Sbjct: 86 cgtttttcctgaggacatcacatctgccgtccacggctttgtaagggtagtcatcttcag 27
Query: 969 tatcgatgcccccgttc 985
|||| ||||| ||||||
Sbjct: 26 tatcaatgccaccgttc 10
Score = 163 bits (82), Expect = 2e-038
Identities = 164/190 (86%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 327 agcaagttccagctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgat 386
||||||| ||||| |||| || |||||| |||||| |||| ||||||||||||| ||||
Sbjct: 682 agcaagtcccagccctgatgt-gcagacggggtagtccggtgggcagcagctggaatgat 624
Query: 387 ccttgcagcaggtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctga 446
|||||||||||||||| || || | |||||||||||||| |||| ||| | ||||||||
Sbjct: 623 ccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctga 564
Query: 447 agccaaacgcgcagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacat 506
|||| |||| |||||||||||||||||| || | ||| |||||||||||||||||||| |
Sbjct: 563 agccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgt 504
Query: 507 tgtcaggggc 516
|||||||||
Sbjct: 503 ggtcaggggc 494
>gb|BU979600.1|BU979600 HA16K22r HA Hordeum vulgare subsp. vulgare cDNA clone HA16K22
5-PRIME, mRNA sequence
Length = 580
Score = 254 bits (128), Expect = 6e-066
Identities = 293/348 (84%)
Strand = Plus / Minus
Query: 649 agcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgttctc 708
|||||| ||||| || || ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 580 agcctctccccagtttggaccccatgagttgcggacaatccagtagtccttgccgttctc 521
Query: 709 ggcgccgtagccgaccgcgacgacaccatggtcaaggttcgtggtgcagcttccgctgaa 768
| ||| ||||| || || || ||||||||||| || | ||| || ||||| |||||
Sbjct: 520 agtgccatagccaacagcaaccacaccatggtcgagttgtgtgccacaccttccactgaa 461
Query: 769 gacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaactgg 828
|||||| || | ||||||||||||||||||||| || || ||||||||||| || || ||
Sbjct: 460 gacaccggaatggtagagctggaactcccggcctccagcttcaatggcaacactcacggg 401
Query: 829 ctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaaagcc 888
|||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct: 400 gtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggacatcttcaaagcc 341
Query: 889 atcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccgtccacggctct 948
||| |||||||| ||| | || ||||||||| | || || | |||||||||||| |
Sbjct: 340 atcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccgtccacggcttt 281
Query: 949 gtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
|||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 280 gtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 233
Score = 153 bits (77), Expect = 2e-035
Identities = 143/165 (86%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 174 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 115
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 114 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 55
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggc 1219
||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 54 acgggggcgacggcgcccttctccctccagtcgacggcctccggc 10
>gb|BG414929.1|BG414929 HVSMEk0004E19f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004E19f, mRNA sequence
Length = 648
Score = 252 bits (127), Expect = 2e-065
Identities = 341/411 (82%), Gaps = 1/411 (0%)
Strand = Plus / Minus
Query: 586 catcatcgcgatcccgcacttcccagtgctggcgttaacgttcctctccatacggatgta 645
|||||| || |||| |||||||||| || | |||| | ||| | |||||| |||| |||
Sbjct: 603 catcatggctatccagcacttcccactggtcacgttgatgttgcgctccatgcggaggta 544
Query: 646 accagcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgtt 705
|||||||| || || || || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 543 cccagcctctcctcagtt-ggaccccatgagttgcggacaatccagtagtccttgccgtt 485
Query: 706 ctcggcgccgtagccgaccgcgacgacaccatggtcaaggttcgtggtgcagcttccgct 765
||| | ||| ||||| || || || ||||||||||| || | ||| || ||||| ||
Sbjct: 484 ctcagtgccatagccaacagcaaccacaccatggtcgagttgtgtgccacaccttccact 425
Query: 766 gaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaac 825
||||||||| || | ||||||||||||||||||||| || || ||||||||||| || ||
Sbjct: 424 gaagacaccggaatggtagagctggaactcccggcctccagcttcaatggcaacactcac 365
Query: 826 tggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaaa 885
|| |||||||||||||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 364 ggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggacatcttcaaa 305
Query: 886 gccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccgtccacggc 945
|||||| |||||||| ||| | || ||||||||| | || || | |||||||||||
Sbjct: 304 gccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccgtccacggc 245
Query: 946 tctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 244 tttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 194
Score = 109 bits (55), Expect = 2e-022
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 135 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 76
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 75 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 16
Query: 1175 acgggcgcgacggcg 1189
||||| |||||||||
Sbjct: 15 acgggggcgacggcg 1
>gb|AV923091.1|AV923091 AV923091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3l16 5', mRNA sequence
Length = 510
Score = 252 bits (127), Expect = 2e-065
Identities = 292/347 (84%)
Strand = Plus / Minus
Query: 650 gcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgttctcg 709
||||| ||||| || || ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 510 gcctctccccagtttggaccccatgagttgcggacaatccagtagtccttgccgttctca 451
Query: 710 gcgccgtagccgaccgcgacgacaccatggtcaaggttcgtggtgcagcttccgctgaag 769
| ||| ||||| || || || ||||||||||| || | ||| || ||||| ||||||
Sbjct: 450 gtgccatagccaacagcaaccacaccatggtcgagttgtgtgccacaccttccactgaag 391
Query: 770 acacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaactggc 829
||||| || | ||||||||||||||||||||| || || ||||||||||| || || ||
Sbjct: 390 acaccggaatggtagagctggaactcccggcctccagcttcaatggcaacactcacgggg 331
Query: 830 tggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaaagcca 889
|||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 330 tggtgagcaaccgccttctgcagcgatttctcgtcattttcagggacatcttcaaagcca 271
Query: 890 tcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccgtccacggctctg 949
|| |||||||| ||| | || ||||||||| | || || | |||||||||||| ||
Sbjct: 270 tcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccgtccacggctttg 211
Query: 950 taagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 210 taagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 164
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 105 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 46
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgca 1158
||||| |||| ||| ||||| || ||||||||||||||||||||
Sbjct: 45 ctttctactgtgctgactgcggaaaaagcccagcaacttccgca 2
>gb|AF134153.1|AF134153 Hordeum vulgare cysteine protease mRNA, partial cds
Length = 490
Score = 250 bits (126), Expect = 1e-064
Identities = 399/490 (81%)
Strand = Plus / Minus
Query: 668 ccccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcg 727
||||| ||||||||||||||||||||||| || || || || | ||| || ||||| ||
Sbjct: 490 ccccaagagttgcggacgatccagtagtctttgccattgtcagtgccataaccgacggca 431
Query: 728 acgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagc 787
|| || |||||||||||| | ||| || || ||||||||||| ||||| | ||||||
Sbjct: 430 accactccatggtcaaggcttgtgccacacctaccgctgaagacgcccgaatgatagagc 371
Query: 788 tggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttc 847
|||||||| |||||||| |||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 370 tggaactcgcggccaccagcctcaatagcaacactgactggttggtgcgcaaccgccttc 311
Query: 848 tgcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctg 907
|| || || ||||| || || | || ||||| |||||||||||||||||||||||| |
Sbjct: 310 tgaagtgatttctcatcattttggggaacatcctcaaagccatcgatgctcacaacctta 251
Query: 908 gcatttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcg 967
||||||| |||||| ||||| ||||| || || || ||| ||||||| ||||| |||||
Sbjct: 250 gcattttccctgttgatgtcacacttgccatctacagctttgtaaggatagtcctcttca 191
Query: 968 gtatcgatgcccccgttctttatgatgaaatcgaaagcggcgtccatgagcccgccgttg 1027
||||| ||||| || ||||| |||||||| || || || | ||||||||||| ||||||
Sbjct: 190 gtatcaatgcctccattcttaatgatgaagtcaaaggcatcatccatgagcccaccgttg 131
Query: 1028 cagccgctgttccctccgtcagtcgagcactctacgagctcctgttcagacagtgtcacc 1087
||||| |||||| ||| | || ||||| ||||| || || ||||| |||| ||| | |
Sbjct: 130 cagccactgttctgtccattggttgagcattctacaagttcttgttccgacaatgtgatc 71
Query: 1088 atctcaccggtgacgatctggttaacgctttccactgagcttactgcagagaaagcccag 1147
|||||||| || || | ||||| | |||||| |||| ||||||||| ||||| ||||||
Sbjct: 70 atctcaccagtaacaagttggttgatgctttctactgtgcttactgcggagaaggcccag 11
Query: 1148 caacttccgc 1157
||||||||||
Sbjct: 10 caacttccgc 1
>gb|CA018842.1|CA018842 HV09N03r HV Hordeum vulgare subsp. vulgare cDNA clone HV09N03
5-PRIME, mRNA sequence
Length = 608
Score = 248 bits (125), Expect = 4e-064
Identities = 278/329 (84%)
Strand = Plus / Minus
Query: 668 ccccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcg 727
||||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || ||
Sbjct: 605 ccccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagca 546
Query: 728 acgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagc 787
|| ||||||||||| || | ||| || ||||| ||||||||||| || | |||||||
Sbjct: 545 accacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagc 486
Query: 788 tggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttc 847
|||||||||||||| || || ||||||||||| || || || ||||||||||||||||||
Sbjct: 485 tggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttc 426
Query: 848 tgcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctg 907
|||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| |
Sbjct: 425 tgcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttc 366
Query: 908 gcatttttcctgttcatgtcgcacttcccgtccacggctctgtaagggtagtcatcttcg 967
|| ||||||||| | || || | |||||||||||| |||||||||||||||||||
Sbjct: 365 gcgtttttcctgaggacatcacatctgccgtccacggctttgtaagggtagtcatcttca 306
Query: 968 gtatcgatgcccccgttctttatgatgaa 996
||||| ||||| |||||||||||||||||
Sbjct: 305 gtatcaatgccaccgttctttatgatgaa 277
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 218 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 159
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 158 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 99
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 98 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 43
>gb|CK122888.1|CK122888 BES1824101b11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B111 5-PRIME, mRNA sequence
Length = 785
Score = 240 bits (121), Expect = 9e-062
Identities = 306/367 (83%), Gaps = 1/367 (0%)
Strand = Plus / Minus
Query: 631 ctccatacggatgtaaccagcctcgcccc-acttcgggccccacgagttgcggacgatcc 689
|||||| |||| ||| |||||||| |||| | || || ||||| ||||||||||| ||||
Sbjct: 784 ctccatgcggaggtacccagcctctcccccagtttggaccccatgagttgcggacaatcc 725
Query: 690 agtagtccttcccgttctcggcgccgtagccgaccgcgacgacaccatggtcaaggttcg 749
|||||||||| |||||||| | ||| ||||| || || || || ||||| || || | |
Sbjct: 724 agtagtccttgccgttctcagtgccatagccaacagcaaccacnccatgntcgagttgtg 665
Query: 750 tggtgcagcttccgctgaagacacccgatttgtagagctggaactcccggccaccggcct 809
|| || ||||| ||||||||||| || | ||||||||||||||||||||| || || |
Sbjct: 664 tgccacaccttccactgaagacaccggaatggtagagctggaactcccggcctccagctt 605
Query: 810 caatggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttct 869
|||||||||| || || || |||||||||||||||||||||||||| |||||||| || |
Sbjct: 604 caatggcaacactcacggggtggtgagcaaccgccttctgcagcgatttctcgtcatttt 545
Query: 870 caggcacatcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgc 929
|||| ||||||||||||||||| |||||||| ||| | || ||||||||| | || |
Sbjct: 544 cagggacatcttcaaagccatcaatgctcaccaccttcgcgtttttcctgaggacatcac 485
Query: 930 acttcccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttcttta 989
| | |||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 484 atctgccgtccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttcttta 425
Query: 990 tgatgaa 996
|||||||
Sbjct: 424 tgatgaa 418
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 359 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 300
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 299 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 240
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 184
>gb|BU983904.1|BU983904 HA31G11r HA Hordeum vulgare subsp. vulgare cDNA clone HA31G11
5-PRIME, mRNA sequence
Length = 451
Score = 236 bits (119), Expect = 1e-060
Identities = 308/371 (83%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 417 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 358
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 357 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 298
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 297 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 238
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 237 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 178
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttct 848
||||||||||||| || || ||||||||||| || || || |||||||||||||||||||
Sbjct: 177 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgccttct 118
Query: 849 gcagcgacttctcgtcgttctcaggcacatcttcaaagccatcgatgctcacaaccctgg 908
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||| | |
Sbjct: 117 gcagcgatttctcgtcattttcagggacatcttcaaagccatcaatgctcaccaccttcg 58
Query: 909 catttttcctg 919
| |||||||||
Sbjct: 57 cgtttttcctg 47
>gb|AV912750.1|AV912750 AV912750 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10b16 5', mRNA sequence
Length = 614
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 510 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 451
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 450 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 391
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 390 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 331
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 330 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 272
Score = 95.6 bits (48), Expect = 3e-018
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 224 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 165
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 164 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 105
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctc 708
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 104 cccatgagttgcggacaatccagtagtccttgccgttctc 65
>gb|AV927800.1|AV927800 AV927800 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3l16 3', mRNA sequence
Length = 515
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 234 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 293
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 294 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 353
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 354 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 413
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 414 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 472
>gb|AV930297.1|AV930297 AV930297 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21o07 3', mRNA sequence
Length = 548
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 286 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 345
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 346 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 405
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 406 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 465
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 466 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 524
>gb|BQ472247.1|BQ472247 HV04N08r HV Hordeum vulgare subsp. vulgare cDNA clone HV04N08
5-PRIME, mRNA sequence
Length = 567
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 522 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 463
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 462 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 403
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 402 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 343
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 342 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 284
Score = 105 bits (53), Expect = 4e-021
Identities = 158/193 (81%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 236 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 177
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 176 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 117
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 116 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 57
Query: 729 cgacaccatggtc 741
| |||||||||||
Sbjct: 56 ccacaccatggtc 44
>gb|CA001173.1|CA001173 HS05B16u HS Hordeum vulgare subsp. vulgare cDNA clone HS05B16
3-PRIME, mRNA sequence
Length = 555
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 294 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 353
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 354 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 413
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 414 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 473
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 474 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 532
>gb|CA005734.1|CA005734 HU08N05u HU Hordeum vulgare subsp. vulgare cDNA clone HU08N05
3-PRIME, mRNA sequence
Length = 556
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 295 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 354
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 355 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 414
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 415 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 474
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 475 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 533
>gb|CA028921.1|CA028921 HZ63K07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63K07
5-PRIME, mRNA sequence
Length = 342
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 290 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 231
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 230 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 171
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 170 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 111
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 110 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 52
>gb|CB875858.1|CB875858 HX09I24w HX Hordeum vulgare subsp. vulgare cDNA clone HX09I24
3-PRIME, mRNA sequence
Length = 656
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 294 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 353
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 354 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 413
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 414 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 473
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 474 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 532
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 580 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 639
Query: 609 ca 610
||
Sbjct: 640 ca 641
>gb|CB881897.1|CB881897 HM11D16w HM Hordeum vulgare subsp. vulgare cDNA clone HM11D16
3-PRIME, mRNA sequence
Length = 640
Score = 228 bits (115), Expect = 4e-058
Identities = 208/239 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 290 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 349
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 350 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 409
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 410 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 469
Query: 458 cagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
||||||||||||||||| || | ||| |||||||||||||||||||| | |||||||||
Sbjct: 470 cagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacgtggtcaggggc 528
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 576 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 635
Query: 609 ca 610
||
Sbjct: 636 ca 637
>gb|BQ756369.1|BQ756369 EBem08_SQ001_L07_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ001_L07 5', mRNA sequence
Length = 362
Score = 226 bits (114), Expect = 1e-057
Identities = 279/334 (83%)
Strand = Plus / Minus
Query: 586 catcatcgcgatcccgcacttcccagtgctggcgttaacgttcctctccatacggatgta 645
|||||| || ||||||||||||||| || | |||| | ||| | |||||| |||| |||
Sbjct: 350 catcatggctatcccgcacttcccactggtcacgttgatgttgcgctccatgcggaggta 291
Query: 646 accagcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgtt 705
|||||||| ||||| || || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 290 cccagcctctccccagtttggaccccatgagttgcggacaatccagtagtccttgccgtt 231
Query: 706 ctcggcgccgtagccgaccgcgacgacaccatggtcaaggttcgtggtgcagcttccgct 765
||| | ||| ||||| || || || ||||||||||| || | ||| || ||||| ||
Sbjct: 230 ctcagtgccatagccaacagcaaccacaccatggtcgagttgtgtgccacaccttccact 171
Query: 766 gaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaac 825
||||||||| || | ||||||||||||||||||||| || || ||||||||||| || ||
Sbjct: 170 gaagacaccggaatggtagagctggaactcccggcctccagcttcaatggcaacactcac 111
Query: 826 tggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaaa 885
|| |||||||||||||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 110 ggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggacatcttcaaa 51
Query: 886 gccatcgatgctcacaaccctggcatttttcctg 919
|||||| |||||||| ||| | || |||||||||
Sbjct: 50 gccatcaatgctcaccaccttcgcgtttttcctg 17
>gb|BQ464939.1|BQ464939 HU02D03r HU Hordeum vulgare subsp. vulgare cDNA clone HU02D03
5-PRIME, mRNA sequence
Length = 597
Score = 212 bits (107), Expect = 2e-053
Identities = 206/239 (86%)
Strand = Plus / Minus
Query: 758 cttccgctgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggca 817
||||| ||||||||||| || | ||||||||||||||||||||| || || |||||||||
Sbjct: 583 cttccactgaagacaccggaatggtagagctggaactcccggcctccagcttcaatggca 524
Query: 818 acgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcaca 877
|| || || || |||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 523 acactcacggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggaca 464
Query: 878 tcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccg 937
|||||||||||||| |||||||| ||| | || ||||||||| | || || | |||
Sbjct: 463 tcttcaaagccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccg 404
Query: 938 tccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 403 tccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 345
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 286 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 227
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 226 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 167
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 166 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 111
>gb|CA012821.1|CA012821 HT06I19r HT Hordeum vulgare subsp. vulgare cDNA clone HT06I19
5-PRIME, mRNA sequence
Length = 465
Score = 212 bits (107), Expect = 2e-053
Identities = 206/239 (86%)
Strand = Plus / Minus
Query: 758 cttccgctgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggca 817
||||| ||||||||||| || | ||||||||||||||||||||| || || |||||||||
Sbjct: 439 cttccactgaagacaccggaatggtagagctggaactcccggcctccagcttcaatggca 380
Query: 818 acgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcaca 877
|| || || || |||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 379 acactcacggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggaca 320
Query: 878 tcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccg 937
|||||||||||||| |||||||| ||| | || ||||||||| | || || | |||
Sbjct: 319 tcttcaaagccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccg 260
Query: 938 tccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 259 tccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 201
Score = 81.8 bits (41), Expect = 5e-014
Identities = 115/137 (83%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 142 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 83
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || |||| ||||||
Sbjct: 82 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccct-gttctt- 25
Query: 1175 acgggcgcgacggcgcc 1191
||||| |||||||||||
Sbjct: 24 acgggggcgacggcgcc 8
>emb|AJ278817.1|HVU278817 Hordeum vulgare partial mRNA for putative cysteine protease
(pCYSPROT gene)
Length = 412
Score = 204 bits (103), Expect = 5e-051
Identities = 205/239 (85%)
Strand = Plus / Minus
Query: 758 cttccgctgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggca 817
||||| ||||||||||| || | ||||||||||||||||||||| || || |||||||||
Sbjct: 357 cttccactgaagacaccggaatggtagagctggaactcccggcctccagcttcaatggca 298
Query: 818 acgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcaca 877
|| || || || |||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 297 acactcacggggtggtgagcaaccgccttctgcagcgatttctcgtcattttcagggaca 238
Query: 878 tcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttcccg 937
|||||||||||||| |||||||| ||| | || ||||||||| | || || | |||
Sbjct: 237 tcttcaaagccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgccg 178
Query: 938 tccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
||||||||| ||||||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 177 tccacggctttgtaagggtagtcatcttcagcatcaatgccaccgttctttatgatgaa 119
>gb|AV927821.1|AV927821 AV927821 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3n11 3', mRNA sequence
Length = 457
Score = 200 bits (101), Expect = 8e-050
Identities = 195/225 (86%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 233 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 292
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 293 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 352
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 353 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 412
Query: 458 cagcagcaggtgctgcccgcggagcacgagaag-ttctcgtcgca 501
||||||||||||||||| || | ||| |||||| |||||||||||
Sbjct: 413 cagcagcaggtgctgcctgcagggcatgagaagtttctcgtcgca 457
>gb|BG414819.1|BG414819 HVSMEk0003N11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003N11f, mRNA sequence
Length = 623
Score = 198 bits (100), Expect = 3e-049
Identities = 206/240 (85%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 758 cttccgctgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggca 817
||||| ||||||||||| || | ||||||||||||||||||||| || || |||||||||
Sbjct: 414 cttccactgaagacaccggaatggtagagctggaactcccggcctccagcttcaatggca 355
Query: 818 acgctaactggctggtga-gcaaccgccttctgcagcgacttctcgtcgttctcaggcac 876
|| || || || |||||| |||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 354 acactcacggggtggtgaagcaaccgccttctgcagcgatttctcgtcattttcagggac 295
Query: 877 atcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgcacttccc 936
||||||||||||||| |||||||| ||| | || ||||||||| | || || | ||
Sbjct: 294 atcttcaaagccatcaatgctcaccaccttcgcgtttttcctgaggacatcacatctgcc 235
Query: 937 gtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatgaa 996
|||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 234 gtccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatgaa 175
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1114 gctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggt 1169
|||||| |||| ||| ||||| || |||||||||||||||||||| || |||||||
Sbjct: 56 gctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggt 1
Score = 42.1 bits (21), Expect = 0.044
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 647 ccagcctcgccccacttcgggccccacgagttgcggacgatccagtagtcctt 699
|||||||| ||||| || || ||||| |||||| |||| | ||||||||||||
Sbjct: 525 ccagcctctccccagtttggaccccatgagttggggacaaaccagtagtcctt 473
>gb|BQ663336.1|BQ663336 HU02D03u HU Hordeum vulgare subsp. vulgare cDNA clone HU02D03
3-PRIME, mRNA sequence
Length = 501
Score = 192 bits (97), Expect = 2e-047
Identities = 172/197 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 295 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 354
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 355 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 414
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 415 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 474
Query: 458 cagcagcaggtgctgcc 474
|||||||||||||||||
Sbjct: 475 cagcagcaggtgctgcc 491
>gb|BQ664777.1|BQ664777 HV04N08u HV Hordeum vulgare subsp. vulgare cDNA clone HV04N08
3-PRIME, mRNA sequence
Length = 476
Score = 192 bits (97), Expect = 2e-047
Identities = 172/197 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 270 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 329
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 330 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 389
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 390 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 449
Query: 458 cagcagcaggtgctgcc 474
|||||||||||||||||
Sbjct: 450 cagcagcaggtgctgcc 466
>gb|CA005287.1|CA005287 HU11C21u HU Hordeum vulgare subsp. vulgare cDNA clone HU11C21
3-PRIME, mRNA sequence
Length = 476
Score = 192 bits (97), Expect = 2e-047
Identities = 172/197 (87%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 270 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 329
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 330 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 389
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 390 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 449
Query: 458 cagcagcaggtgctgcc 474
|||||||||||||||||
Sbjct: 450 cagcagcaggtgctgcc 466
>gb|AJ461874.1|AJ461874 AJ461874 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032C06F1, mRNA sequence
Length = 300
Score = 182 bits (92), Expect = 2e-044
Identities = 167/192 (86%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 192 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 133
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 132 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 73
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaagccaaacgcg 457
||||| || || | |||||||||||||| |||| ||| | |||||||||||| |||| |
Sbjct: 72 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagccgaacgag 13
Query: 458 cagcagcaggtg 469
||||||||||||
Sbjct: 12 cagcagcaggtg 1
>gb|BQ464940.1|BQ464940 HU02D04r HU Hordeum vulgare subsp. vulgare cDNA clone HU02D04
5-PRIME, mRNA sequence
Length = 682
Score = 180 bits (91), Expect = 7e-044
Identities = 166/191 (86%)
Strand = Plus / Minus
Query: 326 gagcaagttccagctctgacgttgcagacagggtagcccggcgggcagcagctggcgtga 385
|||||||| ||||| |||| ||||||||| |||||| |||| ||||||||||||| |||
Sbjct: 462 gagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctggaatga 403
Query: 386 tccttgcagcaggtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctg 445
||||||||||||||||| || || | |||||||||||||| |||| ||| | |||||||
Sbjct: 402 tccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctg 343
Query: 446 aagccaaacgcgcagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagaca 505
||||| |||| |||||||||||||||||| || | ||| ||||||||||||||||||||
Sbjct: 342 aagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacg 283
Query: 506 ttgtcaggggc 516
| |||||||||
Sbjct: 282 tggtcaggggc 272
Score = 105 bits (53), Expect = 4e-021
Identities = 158/193 (81%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 224 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 165
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 164 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 105
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | ||| ||||| || || |
Sbjct: 104 cccatgagttgcggacaatccagtagtccttgccgttctcagtgccatagccaacagcaa 45
Query: 729 cgacaccatggtc 741
| |||||||||||
Sbjct: 44 ccacaccatggtc 32
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttg 319
|||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 644 agggtgcgcttcaaagccttcacgctcagcgggctgttcttg 603
>gb|BQ465404.1|BQ465404 HU03I21r HU Hordeum vulgare subsp. vulgare cDNA clone HU03I21
5-PRIME, mRNA sequence
Length = 595
Score = 180 bits (91), Expect = 7e-044
Identities = 166/191 (86%)
Strand = Plus / Minus
Query: 326 gagcaagttccagctctgacgttgcagacagggtagcccggcgggcagcagctggcgtga 385
|||||||| ||||| |||| ||||||||| |||||| |||| ||||||||||||| |||
Sbjct: 463 gagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctggaatga 404
Query: 386 tccttgcagcaggtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctg 445
||||||||||||||||| || || | |||||||||||||| |||| ||| | |||||||
Sbjct: 403 tccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctg 344
Query: 446 aagccaaacgcgcagcagcaggtgctgcccgcggagcacgagaagttctcgtcgcagaca 505
||||| |||| |||||||||||||||||| || | ||| ||||||||||||||||||||
Sbjct: 343 aagccgaacgagcagcagcaggtgctgcctgcagggcatgagaagttctcgtcgcagacg 284
Query: 506 ttgtcaggggc 516
| |||||||||
Sbjct: 283 tggtcaggggc 273
Score = 95.6 bits (48), Expect = 3e-018
Identities = 129/156 (82%)
Strand = Plus / Minus
Query: 586 catcatcgcgatcccgcacttcccagtgctggcgttaacgttcctctccatacggatgta 645
|||||| || ||||||||||||||| || | |||| | ||| | |||||| |||| |||
Sbjct: 188 catcatggctatcccgcacttcccactggtcacgttgatgttgcgctccatgcggaggta 129
Query: 646 accagcctcgccccacttcgggccccacgagttgcggacgatccagtagtccttcccgtt 705
|||||||| ||||| || || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 128 cccagcctctccccagtttggaccccatgagttgcggacaatccagtagtccttgccgtt 69
Query: 706 ctcggcgccgtagccgaccgcgacgacaccatggtc 741
||| | ||| ||||| || || || |||||||||||
Sbjct: 68 ctcagtgccatagccaacagcaaccacaccatggtc 33
>gb|AL509304.1|AL509304 AL509304 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F21u 3',
mRNA sequence
Length = 530
Score = 178 bits (90), Expect = 3e-043
Identities = 172/198 (86%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 312 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 371
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 372 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 431
Query: 398 gtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctgaag-ccaaacgc 456
||||| || || | |||||||||||||| |||| ||| | |||||||||| || ||||
Sbjct: 432 gtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctgaagcccgaacga 491
Query: 457 gcagcagcaggtgctgcc 474
||||||||||||||||||
Sbjct: 492 gcagcagcaggtgctgcc 509
>gb|CA001622.1|CA001622 HS05B16r HS Hordeum vulgare subsp. vulgare cDNA clone HS05B16
5-PRIME, mRNA sequence
Length = 437
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 244 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 185
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 184 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 125
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 124 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 69
Score = 97.6 bits (49), Expect = 9e-019
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 869 tcaggcacatcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcg 928
||||| ||||||||| ||||||| |||||||| ||| | || ||||||||| | ||
Sbjct: 430 tcagggacatcttcanagccatcaatgctcaccaccttcgcgtttttcctgaggacatca 371
Query: 929 cacttcccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttcttt 988
|| | |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 370 catctgccgtccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttcttt 311
Query: 989 atgatgaa 996
||||||||
Sbjct: 310 atgatgaa 303
>gb|CA027103.1|CA027103 HZ57O09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57O09
5-PRIME, mRNA sequence
Length = 488
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 432 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 373
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 372 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 313
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 257
>gb|CA031300.1|CA031300 HX09I24r HX Hordeum vulgare subsp. vulgare cDNA clone HX09I24
5-PRIME, mRNA sequence
Length = 652
Score = 174 bits (88), Expect = 5e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 1055 cactctacgagctcctgttcagacagtgtcaccatctcaccggtgacgatctggttaacg 1114
||||| || |||||||| || || | ||| |||||||| || ||||| |||||||| | |
Sbjct: 484 cactccacaagctcctgctcggataatgtaaccatctcgccagtgacaatctggttgatg 425
Query: 1115 ctttccactgagcttactgcagagaaagcccagcaacttccgcattgcccctggttcttg 1174
||||| |||| ||| ||||| || |||||||||||||||||||| || ||||||||||||
Sbjct: 424 ctttctactgtgctgactgcggaaaaagcccagcaacttccgcactggccctggttcttg 365
Query: 1175 acgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 364 acgggggcgacggcgcccttctccctccagtcgacggcctccggcagctcctcggc 309
Score = 91.7 bits (46), Expect = 5e-017
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 935 ccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatg 994
|||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 604 ccgtccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttctttatgatg 545
Query: 995 aa 996
||
Sbjct: 544 aa 543
>gb|BG416013.1|BG416013 HVSMEk0009G22f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0009G22f, mRNA sequence
Length = 1001
Score = 170 bits (86), Expect = 7e-041
Identities = 131/146 (89%)
Strand = Plus / Minus
Query: 1085 accatctcaccggtgacgatctggttaacgctttccactgagcttactgcagagaaagcc 1144
|||||||| || ||||| |||||||||| |||||| |||| ||| ||||| || ||||||
Sbjct: 155 accatctcgccagtgacaatctggttaatgctttctactgtgctgactgcggaaaaagcc 96
Query: 1145 cagcaacttccgcattgcccctggttcttgacgggcgcgacggcgcccttctccctccag 1204
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 95 cagcaacttccgcactggccctggttcttgacgggggcgacggcgcccttctccctccag 36
Query: 1205 tcgacgctctccggcagctcctcggc 1230
| |||| ||||||||||||||||||
Sbjct: 35 tagacggcctccggcagctcctcggc 10
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 935 ccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttatgatg 994
|||||||||||| ||||||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct: 305 ccgtccacggctttgtaagggtagtcatcttcagtatcaaagccaccgttctttatgatg 246
Query: 995 aa 996
||
Sbjct: 245 aa 244
>gb|BQ758701.1|BQ758701 EBma07_SQ002_F15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_F15 5', mRNA sequence
Length = 304
Score = 147 bits (74), Expect = 1e-033
Identities = 158/186 (84%)
Strand = Plus / Minus
Query: 811 aatggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctc 870
||||||||| || || || |||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 304 aatggcaacactcacggggtggtgagcaaccgctttctgcagcgatttctcgtcattttc 245
Query: 871 aggcacatcttcaaagccatcgatgctcacaaccctggcatttttcctgttcatgtcgca 930
||| ||||||||||||||||| |||||||| || | || ||||||||| | || ||
Sbjct: 244 agggacatcttcaaagccatcaatgctcaccactttcgcgtttttcctgaggacatcaca 185
Query: 931 cttcccgtccacggctctgtaagggtagtcatcttcggtatcgatgcccccgttctttat 990
| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 184 tctgccgtccacggctttgtaagggtagtcatcttcagtatcaatgccaccgttctttat 125
Query: 991 gatgaa 996
||||||
Sbjct: 124 gatgaa 119
>gb|BQ760974.1|BQ760974 EBro03_SQ004_A03_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_A03 5', mRNA sequence
Length = 507
Score = 147 bits (74), Expect = 1e-033
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 356 gggtagcccggcgggcagcagctggcgtgatccttgcagcaggtggcgccctcgaccggg 415
|||||| |||| ||||||||||||| |||||||||||||||||||| || || |||
Sbjct: 503 gggtagtccggtgggcagcagctggaatgatccttgcagcaggtggcaccttccgntggg 444
Query: 416 cagcagccccagaccaagcagacgttcctgaagccaaacgcgcagcagcaggtgctgccc 475
||||||||||| |||| ||| | |||||||||||| |||| ||||||||||||||||||
Sbjct: 443 cagcagccccacaccaggcaaaggttcctgaagccgaacgagcagcagcaggtgctgcct 384
Query: 476 gcggagcacgagaagttctcgtcgcagacattgtcaggggc 516
|| | ||| |||||||||||||||||||| | |||||||||
Sbjct: 383 gcagggcatgagaagttctcgtcgcagacgtggtcaggggc 343
Score = 133 bits (67), Expect = 2e-029
Identities = 238/295 (80%)
Strand = Plus / Minus
Query: 549 tgggagggttcgcgcccttcttcgtcgggtaggacgccatcatcgcgatcccgcacttcc 608
|||| ||||| || |||||||| || ||||| || | |||||| || |||||||||||||
Sbjct: 295 tgggtgggttagcacccttcttggtggggtacgatgacatcatggctatcccgcacttcc 236
Query: 609 cagtgctggcgttaacgttcctctccatacggatgtaaccagcctcgccccacttcgggc 668
|| || | |||| | ||| | |||||| |||| ||| |||||||| ||||| || || |
Sbjct: 235 cactggtcacgttgatgttgcgctccatgcggaggtacccagcctctccccagtttggac 176
Query: 669 cccacgagttgcggacgatccagtagtccttcccgttctcggcgccgtagccgaccgcga 728
|||| ||||||||||| |||||||||||||| |||||||| | || || | || || |
Sbjct: 175 cccatgagttgcggacaatccagtagtccttgccgttctcagtgcaaaagacaacagcaa 116
Query: 729 cgacaccatggtcaaggttcgtggtgcagcttccgctgaagacacccgatttgtagagct 788
| ||||||||||| || | ||| || ||||| ||||||||||| || | ||||||||
Sbjct: 115 ccacaccatggtcgagttgtgtgccacaccttccactgaagacaccggaatggtagagct 56
Query: 789 ggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgc 843
||||||||||||| || || ||||||||||| || || || ||||||||||||||
Sbjct: 55 ggaactcccggcctccagcttcaatggcaacactcacggggtggtgagcaaccgc 1
>gb|AJ434822.1|AJ434822 AJ434822 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032B05F1, mRNA sequence
Length = 435
Score = 137 bits (69), Expect = 1e-030
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 129 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 70
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 69 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 10
Query: 398 gtggc 402
|||||
Sbjct: 9 gtggc 5
>gb|BM370126.2|BM370126 EBro08_SQ003_B07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_B07 5', mRNA sequence
Length = 456
Score = 137 bits (69), Expect = 1e-030
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 136 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 77
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 76 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 17
Query: 398 gtggc 402
|||||
Sbjct: 16 gtggc 12
>gb|AL509288.1|AL509288 AL509288 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F02u 3',
mRNA sequence
Length = 496
Score = 135 bits (68), Expect = 4e-030
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 308 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 367
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 368 gccctgatgttgcagacggggtagtccggtgggcagcagctggaatgatccttgcagcag 427
Query: 398 gtgg 401
||||
Sbjct: 428 gtgg 431
>gb|BQ663674.1|BQ663674 HU03I21u HU Hordeum vulgare subsp. vulgare cDNA clone HU03I21
3-PRIME, mRNA sequence
Length = 609
Score = 123 bits (62), Expect = 2e-026
Identities = 119/138 (86%)
Strand = Plus / Plus
Query: 326 gagcaagttccagctctgacgttgcagacagggtagcccggcgggcagcagctggcgtga 385
|||||||| ||||| |||| ||||||||| |||||| |||| ||||||||||||| |||
Sbjct: 472 gagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctggaatga 531
Query: 386 tccttgcagcaggtggcgccctcgaccgggcagcagccccagaccaagcagacgttcctg 445
||||||||||||||||| || || | |||||||||||||| |||| ||| | |||||||
Sbjct: 532 tccttgcagcaggtggcaccttccgctgggcagcagccccacaccaggcaaaggttcctg 591
Query: 446 aagccaaacgcgcagcag 463
||||| |||| |||||||
Sbjct: 592 aagccgaacgagcagcag 609
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttg 319
|||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 290 agggtgcgcttcaaagccttcacgctcagcgggctgttcttg 331
>gb|AL511972.1|AL511972 AL511972 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09P03u 3',
mRNA sequence
Length = 482
Score = 117 bits (59), Expect = 9e-025
Identities = 108/125 (86%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| ||||||| |||||||||||| || | |||||||| |||
Sbjct: 272 agggtgcgcttcaaagccttcacgctcancgggctgttcttggtcgctgagcaagtccca 331
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctggcgtgatccttgcagcag 397
|| |||| |||||| || |||||| |||| |||||||| |||| |||||||||||||||
Sbjct: 332 gccctgatgttgcatacggggtagtccggtgggcagcanctggaatgatccttgcagcag 391
Query: 398 gtggc 402
|||||
Sbjct: 392 gtggc 396
>gb|CA017219.1|CA017219 HV14C24u HV Hordeum vulgare subsp. vulgare cDNA clone HV14C24
3-PRIME, mRNA sequence
Length = 386
Score = 109 bits (55), Expect = 2e-022
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 267 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 326
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctgg 380
|| |||| ||||||||| |||||| |||| |||||||||||||
Sbjct: 327 gccctgatgttgcagacggggtagtccggtgggcagcagctgg 369
>gb|CA020048.1|CA020048 HV14C24r HV Hordeum vulgare subsp. vulgare cDNA clone HV14C24
5-PRIME, mRNA sequence
Length = 386
Score = 109 bits (55), Expect = 2e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttgctcaccgagcaagttcca 337
|||||||||||||| ||||| |||||||| |||||||||||| || | |||||||| |||
Sbjct: 120 agggtgcgcttcaaagccttcacgctcagcgggctgttcttggtcgctgagcaagtccca 61
Query: 338 gctctgacgttgcagacagggtagcccggcgggcagcagctgg 380
|| |||| ||||||||| |||||| |||| |||||||||||||
Sbjct: 60 gccctgatgttgcagacggggtagtccggtgggcagcagctgg 18
>gb|BQ663337.1|BQ663337 HU02D04u HU Hordeum vulgare subsp. vulgare cDNA clone HU02D04
3-PRIME, mRNA sequence
Length = 566
Score = 89.7 bits (45), Expect = 2e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 326 gagcaagttccagctctgacgttgcagacagggtagcccggcgggcagcagctggcgtga 385
|||||||| ||||| |||| ||||||||| |||||| |||| ||||||||||||| |||
Sbjct: 473 gagcaagtcccagccctgatgttgcagacggggtagtccggtgggcagcagctggaatga 532
Query: 386 tccttgcagcaggtggc 402
|||||||||||||||||
Sbjct: 533 tccttgcagcaggtggc 549
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 278 agggtgcgcttcaaggccttgacgctcagtgggctgttcttg 319
|||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 291 agggtgcgcttcaaagccttcacgctcagcgggctgttcttg 332
>gb|BG310007.1|BG310007 HVSMEc0015P24f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0015P24f, mRNA sequence
Length = 800
Score = 83.8 bits (42), Expect = 1e-014
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 1114 gctttccactgagcttactgcagagaaagcccagcaacttccg-cattgcccctggttct 1172
||||||||||| ||| || | || ||||||| || ||||||| || || ||||||||||
Sbjct: 609 gctttccactgtgctgacgccggaaaaagcccggctacttccggcactggccctggttct 550
Query: 1173 tgacgggcgcgacggcgcccttctccctccagtcgacgctctccggcagctcctcggc 1230
| |||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 taccggggtcgacggcgcccttctccctccagtcgacggcttccggcagctcctcggc 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,322
Number of Sequences: 312970
Number of extensions: 154322
Number of successful extensions: 43021
Number of sequences better than 0.5: 209
Number of HSP's better than 0.5 without gapping: 208
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42434
Number of HSP's gapped (non-prelim): 541
length of query: 1264
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1245
effective length of database: 169,188,109
effective search space: 210639195705
effective search space used: 210639195705
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)