BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421455.1|BE421455 HWM009.E04 ITEC HWM Barley Leaf Libr... 44 0.006
gb|BU995111.1|BU995111 HM09D21r HM Hordeum vulgare subsp. v... 42 0.023
gb|BE421827.1|BE421827 HWM015cB.05r ITEC HWM Barley Leaf Li... 40 0.092
gb|BE421982.1|BE421982 HWM018cA.01r ITEC HWM Barley Leaf Li... 40 0.092
gb|AV916698.1|AV916698 AV916698 K. Sato unpublished cDNA li... 40 0.092
gb|AV922676.1|AV922676 AV922676 K. Sato unpublished cDNA li... 40 0.092
gb|AV932276.1|AV932276 AV932276 K. Sato unpublished cDNA li... 40 0.092
gb|AV934324.1|AV934324 AV934324 K. Sato unpublished cDNA li... 40 0.092
gb|BJ469788.1|BJ469788 BJ469788 K. Sato unpublished cDNA li... 40 0.092
gb|BJ476879.1|BJ476879 BJ476879 K. Sato unpublished cDNA li... 40 0.092
gb|BE411422.1|BE411422 ISC005.D10F990615 ITEC ISC Barley Le... 38 0.36
gb|BE420776.1|BE420776 HWM002.D09 ITEC HWM Barley Leaf Libr... 38 0.36
gb|BE420952.1|BE420952 HWM004.C05 ITEC HWM Barley Leaf Libr... 38 0.36
gb|BE421155.1|BE421155 HWM006.D04 ITEC HWM Barley Leaf Libr... 38 0.36
gb|BE421186.1|BE421186 HWM006.F11 ITEC HWM Barley Leaf Libr... 38 0.36
gb|BE422045.1|BE422045 HWM019cD.01r ITEC HWM Barley Leaf Li... 38 0.36
gb|AV832863.1|AV832863 AV832863 K. Sato unpublished cDNA li... 38 0.36
gb|BE214783.1|BE214783 HV_CEb0004J12f Hordeum vulgare seedl... 38 0.36
gb|BE558895.1|BE558895 HV_CEb0020L06f Hordeum vulgare seedl... 38 0.36
gb|AV909178.1|AV909178 AV909178 K. Sato unpublished cDNA li... 38 0.36
gb|AV923008.1|AV923008 AV923008 K. Sato unpublished cDNA li... 38 0.36
gb|AV923726.1|AV923726 AV923726 K. Sato unpublished cDNA li... 38 0.36
gb|AV924308.1|AV924308 AV924308 K. Sato unpublished cDNA li... 38 0.36
gb|AV932270.1|AV932270 AV932270 K. Sato unpublished cDNA li... 38 0.36
gb|AV935111.1|AV935111 AV935111 K. Sato unpublished cDNA li... 38 0.36
gb|BM816001.1|BM816001 HB105H02_SK.ab1 HB Hordeum vulgare s... 38 0.36
gb|BM816475.1|BM816475 HC114G07_SK.ab1 HC Hordeum vulgare s... 38 0.36
gb|BM816851.1|BM816851 HB105B12_SK.ab1 HB Hordeum vulgare s... 38 0.36
gb|BM816852.1|BM816852 HB105C01_SK.ab1 HB Hordeum vulgare s... 38 0.36
gb|BM817198.1|BM817198 HC109D08_T3.ab1 HC Hordeum vulgare s... 38 0.36
gb|BM817412.1|BM817412 HC113G11_SK.ab1 HC Hordeum vulgare s... 38 0.36
gb|BJ449789.1|BJ449789 BJ449789 K. Sato unpublished cDNA li... 38 0.36
gb|BJ452017.1|BJ452017 BJ452017 K. Sato unpublished cDNA li... 38 0.36
gb|BJ454019.1|BJ454019 BJ454019 K. Sato unpublished cDNA li... 38 0.36
gb|BJ463695.1|BJ463695 BJ463695 K. Sato unpublished cDNA li... 38 0.36
gb|BJ465508.1|BJ465508 BJ465508 K. Sato unpublished cDNA li... 38 0.36
gb|BJ469503.1|BJ469503 BJ469503 K. Sato unpublished cDNA li... 38 0.36
gb|BJ469693.1|BJ469693 BJ469693 K. Sato unpublished cDNA li... 38 0.36
gb|BJ471390.1|BJ471390 BJ471390 K. Sato unpublished cDNA li... 38 0.36
gb|BJ471692.1|BJ471692 BJ471692 K. Sato unpublished cDNA li... 38 0.36
gb|BJ472877.1|BJ472877 BJ472877 K. Sato unpublished cDNA li... 38 0.36
gb|BJ473292.1|BJ473292 BJ473292 K. Sato unpublished cDNA li... 38 0.36
gb|BU967155.1|BU967155 HB03H05r BC Hordeum vulgare subsp. v... 38 0.36
gb|BU975149.1|BU975149 HB30D18r BC Hordeum vulgare subsp. v... 38 0.36
gb|BU975325.1|BU975325 HB30M24r BC Hordeum vulgare subsp. v... 38 0.36
gb|BJ544460.1|BJ544460 BJ544460 K. Sato unpublished cDNA li... 38 0.36
gb|BJ547289.1|BJ547289 BJ547289 K. Sato unpublished cDNA li... 38 0.36
gb|BJ548528.1|BJ548528 BJ548528 K. Sato unpublished cDNA li... 38 0.36
gb|BJ549153.1|BJ549153 BJ549153 K. Sato unpublished cDNA li... 38 0.36
gb|CB881136.1|CB881136 HM08O03w HM Hordeum vulgare subsp. v... 38 0.36
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 38 0.36
>gb|BE421455.1|BE421455 HWM009.E04 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.E04, mRNA sequence
Length = 1043
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 108 gaattcggcacgaggctcgaga 129
>gb|BU995111.1|BU995111 HM09D21r HM Hordeum vulgare subsp. vulgare cDNA clone HM09D21
5-PRIME, mRNA sequence
Length = 359
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 2 gaattcggcacgaggctcgag 22
>gb|BE421827.1|BE421827 HWM015cB.05r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM015cB.05, mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 101 gaattcggcacgaggctcga 120
>gb|BE421982.1|BE421982 HWM018cA.01r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM018cA.01, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 104 gaattcggcacgaggctcga 123
>gb|AV916698.1|AV916698 AV916698 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19f04 5', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 aattcggcacgaggctcgag 21
||||||||||||||||||||
Sbjct: 12 aattcggcacgaggctcgag 31
>gb|AV922676.1|AV922676 AV922676 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd0e06 5', mRNA sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 25 gaattcggcacgaggctcga 44
>gb|AV932276.1|AV932276 AV932276 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2p06 5', mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 11 gaattcggcacgaggctcga 30
>gb|AV934324.1|AV934324 AV934324 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8a23 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 21 gaattcggcacgaggctcga 40
>gb|BJ469788.1|BJ469788 BJ469788 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37i17 5', mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 22 gaattcggcacgaggctcga 41
>gb|BJ476879.1|BJ476879 BJ476879 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37i17 3', mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 629 gaattcggcacgaggctcga 610
>gb|BE411422.1|BE411422 ISC005.D10F990615 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC005.D10, mRNA sequence
Length = 532
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcgag 21
|||||||||||||||||||
Sbjct: 3 attcggcacgaggctcgag 21
>gb|BE420776.1|BE420776 HWM002.D09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM002.D09, mRNA sequence
Length = 1327
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 42 gaattcggcacgaggctcg 60
>gb|BE420952.1|BE420952 HWM004.C05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.C05, mRNA sequence
Length = 1246
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 2 gaattcggcacgaggctcg 20
>gb|BE421155.1|BE421155 HWM006.D04 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM006.D04, mRNA sequence
Length = 1057
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 101 gaattcggcacgaggctcg 119
>gb|BE421186.1|BE421186 HWM006.F11 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM006.F11, mRNA sequence
Length = 798
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 103 gaattcggcacgaggctcg 121
>gb|BE422045.1|BE422045 HWM019cD.01r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM019cD.01, mRNA sequence
Length = 1252
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 98 gaattcggcacgaggctcg 116
>gb|AV832863.1|AV832863 AV832863 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal8j23, mRNA
sequence
Length = 525
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 425 gaattcggcacgaggctcg 443
>gb|BE214783.1|BE214783 HV_CEb0004J12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004J12f, mRNA sequence
Length = 635
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 9 gaattcggcacgaggctcg 27
>gb|BE558895.1|BE558895 HV_CEb0020L06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020L06f, mRNA sequence
Length = 825
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 8 gaattcggcacgaggctcg 26
>gb|AV909178.1|AV909178 AV909178 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o13 5', mRNA sequence
Length = 459
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 4 gaattcggcacgaggctcg 22
>gb|AV923008.1|AV923008 AV923008 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3f11 5', mRNA sequence
Length = 349
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcgag 21
|||||||||||||||||||
Sbjct: 1 attcggcacgaggctcgag 19
>gb|AV923726.1|AV923726 AV923726 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1d09 5', mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 3 gaattcggcacgaggctcg 21
>gb|AV924308.1|AV924308 AV924308 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14b17 5', mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcgag 21
|||||||||||||||||||
Sbjct: 1 attcggcacgaggctcgag 19
>gb|AV932270.1|AV932270 AV932270 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2o20 5', mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 18 gaattcggcacgaggctcg 36
>gb|AV935111.1|AV935111 AV935111 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2o20 3', mRNA sequence
Length = 525
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 515 gaattcggcacgaggctcg 497
>gb|BM816001.1|BM816001 HB105H02_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105H02_SK.ab1 similar to hypothetical protein
[Arabidopsis thaliana], hypothetical protein [Oryza
sativa],hypothetical protein (strain MSB8) [Thermotoga
maritima],hypothetical protein F24G24.100 [Arabidopsis
thaliana],hypothetical protein F24G24.80 [Arabidopsis
thaliana], mRNA sequence
Length = 911
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 15 gaattcggcacgaggctcg 33
>gb|BM816475.1|BM816475 HC114G07_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114G07_SK.ab1 similar to Leucyl
aminopeptidase,Cathepsin B, mRNA sequence
Length = 932
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 13 gaattcggcacgaggctcg 31
>gb|BM816851.1|BM816851 HB105B12_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105B12_SK.ab1 similar to (AC002130) F1N21.7
[Arabidopsis thaliana],(AF127435) unknown [Picea abies]
gi|6049100|gb|AAF02453.1|AF127436_1 (AF127436) unknown
[Picea abies], mRNA sequence
Length = 917
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 16 gaattcggcacgaggctcg 34
>gb|BM816852.1|BM816852 HB105C01_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105C01_SK.ab1, mRNA sequence
Length = 796
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 13 gaattcggcacgaggctcg 31
>gb|BM817198.1|BM817198 HC109D08_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109D08_T3.ab1 similar to Hydrogen
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Transferred entry:
1.18.99.1,Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 943
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgagac 23
|||||||||||||||||| ||||
Sbjct: 13 gaattcggcacgaggctcaagac 35
>gb|BM817412.1|BM817412 HC113G11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113G11_SK.ab1 similar to (AF271660) putative
aquaporin TIP3 [Vitis berlandieri x Vitis
rupestris],SPCP2 protein (L12258) nodulin-26 [Glycine
max],gamma tonoplast intrinsic protein [Pyrus
communis],probable membrane channel protein F11O4.1
[Arabidopsis thaliana], mRNA sequence
Length = 931
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 13 gaattcggcacgaggctcg 31
>gb|BJ449789.1|BJ449789 BJ449789 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26l11 5', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 4 gaattcggcacgaggctcg 22
>gb|BJ452017.1|BJ452017 BJ452017 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37g20 5', mRNA sequence
Length = 380
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 4 gaattcggcacgaggctcg 22
>gb|BJ454019.1|BJ454019 BJ454019 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45j20 5', mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 3 gaattcggcacgaggctcg 21
>gb|BJ463695.1|BJ463695 BJ463695 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30b18 5', mRNA sequence
Length = 120
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcgag 21
|||||||||||||||||||
Sbjct: 1 attcggcacgaggctcgag 19
>gb|BJ465508.1|BJ465508 BJ465508 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29h23 5', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 4 gaattcggcacgaggctcg 22
>gb|BJ469503.1|BJ469503 BJ469503 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23h18 5', mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 33 gaattcggcacgaggctcg 51
>gb|BJ469693.1|BJ469693 BJ469693 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37b05 5', mRNA sequence
Length = 677
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 24 gaattcggcacgaggctcg 42
>gb|BJ471390.1|BJ471390 BJ471390 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18c17 5', mRNA sequence
Length = 476
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 21 gaattcggcacgaggctcg 39
>gb|BJ471692.1|BJ471692 BJ471692 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21b23 5', mRNA sequence
Length = 349
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 10 gaattcggcacgaggctcg 28
>gb|BJ472877.1|BJ472877 BJ472877 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal39h20 5', mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 11 gaattcggcacgaggctcg 29
>gb|BJ473292.1|BJ473292 BJ473292 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41j09 5', mRNA sequence
Length = 517
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 427 gaattcggcacgaggctcg 445
>gb|BU967155.1|BU967155 HB03H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H05
5-PRIME, mRNA sequence
Length = 511
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 20 gaattcggcacgaggctcg 38
>gb|BU975149.1|BU975149 HB30D18r BC Hordeum vulgare subsp. vulgare cDNA clone HB30D18
5-PRIME, mRNA sequence
Length = 533
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 20 gaattcggcacgaggctcg 38
>gb|BU975325.1|BU975325 HB30M24r BC Hordeum vulgare subsp. vulgare cDNA clone HB30M24
5-PRIME, mRNA sequence
Length = 166
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 20 gaattcggcacgaggctcg 38
>gb|BJ544460.1|BJ544460 BJ544460 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29d07 5', mRNA sequence
Length = 567
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 3 gaattcggcacgaggctcg 21
>gb|BJ547289.1|BJ547289 BJ547289 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29n05 5', mRNA sequence
Length = 542
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 11 gaattcggcacgaggctcg 29
>gb|BJ548528.1|BJ548528 BJ548528 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29n05 3', mRNA sequence
Length = 522
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 512 gaattcggcacgaggctcg 494
>gb|BJ549153.1|BJ549153 BJ549153 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24g22 5', mRNA sequence
Length = 618
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcgag 21
|||||||||||||||||||
Sbjct: 1 attcggcacgaggctcgag 19
>gb|CB881136.1|CB881136 HM08O03w HM Hordeum vulgare subsp. vulgare cDNA clone HM08O03
3-PRIME, mRNA sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 531 gaattcggcacgaggctcg 513
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,451
Number of Sequences: 312970
Number of extensions: 86451
Number of successful extensions: 34174
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34053
Number of HSP's gapped (non-prelim): 121
length of query: 675
length of database: 175,134,539
effective HSP length: 19
effective length of query: 656
effective length of database: 169,188,109
effective search space: 110987399504
effective search space used: 110987399504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)