BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115208.2.3
         (672 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BM442103.2|BM442103  EBan01_SQ002_D11_R anther, yellow st...    68   4e-010
gb|AL503842.1|AL503842  AL503842 Hordeum vulgare Barke roots...    40   0.091
gb|AV836804.1|AV836804  AV836804 K. Sato unpublished cDNA li...    38   0.36 
gb|CA011287.1|CA011287  HT06A12u HT Hordeum vulgare subsp. v...    38   0.36 
gb|CA012648.1|CA012648  HT06A12r HT Hordeum vulgare subsp. v...    38   0.36 
gb|CA013737.1|CA013737  HT09F12r HT Hordeum vulgare subsp. v...    38   0.36 
gb|CB879336.1|CB879336  HP11M20T HP Hordeum vulgare subsp. v...    38   0.36 

>gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow stage, no treatment, cv Optic,
           EBan01 Hordeum vulgare subsp. vulgare cDNA clone
           EBan01_SQ002_D11 5', mRNA sequence
          Length = 676

 Score = 67.9 bits (34), Expect = 4e-010
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  ccccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccga 96
           |||||| |||||||||||||||  |||||||| ||| ||  ||||||| |||||||||||
Sbjct: 586 ccccaacgtcatcaccgccgagcaccgcacctacattgaagtcgtctttgagaaccccga 645

                                 
Query: 97  gaagagcatagactccctccac 118
           || |||||| ||| || |||||
Sbjct: 646 gaggagcatcgacaccttccac 667



>gb|AL503842.1|AL503842 AL503842 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW03J14T 5', mRNA sequence
          Length = 700

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 cggcgtcgggatgggccccg 158
           ||||||||||||||||||||
Sbjct: 16  cggcgtcgggatgggccccg 35



>gb|AV836804.1|AV836804 AV836804 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd3l06, mRNA
           sequence
          Length = 507

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 169 gccggaggtgaggaagacg 187
           |||||||||||||||||||
Sbjct: 442 gccggaggtgaggaagacg 460



>gb|CA011287.1|CA011287 HT06A12u HT Hordeum vulgare subsp. vulgare cDNA clone HT06A12
           3-PRIME, mRNA sequence
          Length = 555

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  ttccgcaccttcatcgaga 77
           |||||||||||||||||||
Sbjct: 264 ttccgcaccttcatcgaga 246



>gb|CA012648.1|CA012648 HT06A12r HT Hordeum vulgare subsp. vulgare cDNA clone HT06A12
           5-PRIME, mRNA sequence
          Length = 700

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 59  ttccgcaccttcatcgaga 77
           |||||||||||||||||||
Sbjct: 630 ttccgcaccttcatcgaga 648



>gb|CA013737.1|CA013737 HT09F12r HT Hordeum vulgare subsp. vulgare cDNA clone HT09F12
           5-PRIME, mRNA sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 59  ttccgcaccttcatcgaga 77
           |||||||||||||||||||
Sbjct: 629 ttccgcaccttcatcgaga 647



>gb|CB879336.1|CB879336 HP11M20T HP Hordeum vulgare subsp. vulgare cDNA clone HP11M20
           5-PRIME, mRNA sequence
          Length = 574

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 169 gccggaggtgaggaagacg 187
           |||||||||||||||||||
Sbjct: 75  gccggaggtgaggaagacg 57



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,726
Number of Sequences: 312970
Number of extensions: 77726
Number of successful extensions: 24190
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24181
Number of HSP's gapped (non-prelim): 9
length of query: 672
length of database: 175,134,539
effective HSP length: 19
effective length of query: 653
effective length of database: 169,188,109
effective search space: 110479835177
effective search space used: 110479835177
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)