BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 70 1e-010
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 70 1e-010
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 70 1e-010
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 70 1e-010
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 70 1e-010
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 70 1e-010
gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-a... 46 0.002
gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. v... 46 0.002
gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. v... 46 0.002
gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. v... 46 0.002
gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke devel... 42 0.023
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 42 0.023
gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke devel... 40 0.093
gb|AL507273.1|AL507273 AL507273 Hordeum vulgare Barke devel... 40 0.093
gb|BQ660177.1|BQ660177 HI01F04w HI Hordeum vulgare subsp. v... 40 0.093
gb|CB876272.1|CB876272 HX10M17w HX Hordeum vulgare subsp. v... 40 0.093
gb|BQ665571.1|BQ665571 HX04D11u HX Hordeum vulgare subsp. v... 38 0.37
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 116 ctaccccatcatcatcgatcagaagtactgccccaacaa 154
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 86 ccacgaacggcctgcgcatcaagtcgtacgaggactccaagtc 128
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 19 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 61
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 209 ctaccccatcatcatcgatcagaagtactgccccaacaa 247
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 86 ccacgaacggcctgcgcatcaagtcgtacgaggactccaagtc 128
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 112 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 154
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 ggcagcctggggcgctacaaggacgagaaggacgtg 48
|||||||| ||| | |||||||||||||||||||||
Sbjct: 39 ggcagcctcgggaggtacaaggacgagaaggacgtg 74
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 86 ccacgaacggcctgcgcatcaagtcgtacgaggactccaagtc 128
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 219 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 261
Score = 61.9 bits (31), Expect = 3e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||| ||||
Sbjct: 316 ctaccccatcatcatcgatcagaagtactgcccccacaa 354
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 ggcagcctggggcgctacaaggacgagaaggacgtg 48
|||||||| ||| | |||||||||||||||||||||
Sbjct: 146 ggcagcctcgggaggtacaaggacgagaaggacgtg 181
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 12 ctaccccatcatcatcgatcagaagtactgccccaacaa 50
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 91 ctaccccatcatcatcgatcagaagtactgccccaacaa 129
Score = 63.9 bits (32), Expect = 6e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 93 cggcctgcgcatcaagtcgtacgaggactccaagtc 128
|||||| |||||||||||||||||||||||||||||
Sbjct: 1 cggcctccgcatcaagtcgtacgaggactccaagtc 36
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 183 ctaccccatcatcatcgaccagaagtactgccccaacaa 221
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 151 ctaccccatcatcatcgatcagaagtactgccccaacaa 189
Score = 69.9 bits (35), Expect = 1e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 86 ccacgaacggcctgcgcatcaagtcgtacgaggactccaagtc 128
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 54 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 96
>gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015N01f, mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccag 204
|||||| ||||||||||||||||||||
Sbjct: 161 gtctccaaccccatcatcatcgaccag 187
>gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D02
5-PRIME, mRNA sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccag 204
|||||| ||||||||||||||||||||
Sbjct: 485 gtctccaaccccatcatcatcgaccag 511
>gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
5-PRIME, mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccag 204
|||||| ||||||||||||||||||||
Sbjct: 268 gtctccaaccccatcatcatcgaccag 294
>gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
3-PRIME, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 178 gtctcctaccccatcatcatcgaccag 204
|||||| ||||||||||||||||||||
Sbjct: 436 gtctccaaccccatcatcatcgaccag 410
>gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C10T 5',
mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggc 25
||||||||| |||||||||||||||
Sbjct: 20 ggcatcagcatcggcagcctggggc 44
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 198 accccatcatcatcgaccag 217
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggc 25
||||||||| |||||||||||||||
Sbjct: 381 ggcatcagcatcggcagcctggggc 405
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 559 accccatcatcatcgaccag 578
>gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03A18T 5',
mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 199 accccatcatcatcgaccag 218
>gb|AL507273.1|AL507273 AL507273 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J01V 5',
mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 200 accccatcatcatcgaccag 219
>gb|BQ660177.1|BQ660177 HI01F04w HI Hordeum vulgare subsp. vulgare cDNA clone HI01F04
3-PRIME, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 498 accccatcatcatcgaccag 479
>gb|CB876272.1|CB876272 HX10M17w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M17
3-PRIME, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccag 204
||||||||||||||||||||
Sbjct: 497 accccatcatcatcgaccag 478
>gb|BQ665571.1|BQ665571 HX04D11u HX Hordeum vulgare subsp. vulgare cDNA clone HX04D11
3-PRIME, mRNA sequence
Length = 497
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 186 ccccatcatcatcgaccag 204
|||||||||||||||||||
Sbjct: 497 ccccatcatcatcgaccag 479
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,944
Number of Sequences: 312970
Number of extensions: 87944
Number of successful extensions: 28941
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28908
Number of HSP's gapped (non-prelim): 33
length of query: 682
length of database: 175,134,539
effective HSP length: 19
effective length of query: 663
effective length of database: 169,188,109
effective search space: 112171716267
effective search space used: 112171716267
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)