BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.1
(642 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow st... 78 4e-013
gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow st... 78 4e-013
gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow st... 78 4e-013
gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow st... 78 4e-013
gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow st... 64 6e-009
gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow st... 62 2e-008
gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke devel... 56 1e-006
gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. v... 54 6e-006
gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-a... 44 0.006
gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. v... 44 0.006
gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. v... 44 0.006
gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. v... 44 0.006
gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke devel... 42 0.022
gb|BI956265.1|BI956265 HVSMEn0001M08f Hordeum vulgare rachi... 38 0.34
>gb|BM442473.2|BM442473 EBan01_SQ003_E14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E14 5', mRNA sequence
Length = 454
Score = 77.8 bits (39), Expect = 4e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 94 ccaccaacggcctgcgcatcaagtcgtacgaggactccaagtc 136
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 19 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 61
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||||||||
Sbjct: 116 ctaccccatcatcatcgatcagaagtactgccccaacaa 154
>gb|BM442515.2|BM442515 EBan01_SQ003_G09_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G09 5', mRNA sequence
Length = 588
Score = 77.8 bits (39), Expect = 4e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 94 ccaccaacggcctgcgcatcaagtcgtacgaggactccaagtc 136
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 112 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 154
Score = 71.9 bits (36), Expect = 2e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 caggccacggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
|||||||||||||||| | |||||||| ||| |||||||||||||||||||||||
Sbjct: 19 caggccacggcatcagtattggcagcctcgggaggtacaaggacgagaaggacgtg 74
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||||||||
Sbjct: 209 ctaccccatcatcatcgatcagaagtactgccccaacaa 247
>gb|BM442620.2|BM442620 EBan01_SQ003_L02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L02 5', mRNA sequence
Length = 377
Score = 77.8 bits (39), Expect = 4e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 94 ccaccaacggcctgcgcatcaagtcgtacgaggactccaagtc 136
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 219 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 261
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 4 gccacggcatcagcgtcggcagcctggggcggtacaaggacgagaaggacgtg 56
||||||||||||| | |||||||| ||| |||||||||||||||||||||||
Sbjct: 129 gccacggcatcagtattggcagcctcgggaggtacaaggacgagaaggacgtg 181
Score = 54.0 bits (27), Expect = 6e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||| ||||
Sbjct: 316 ctaccccatcatcatcgatcagaagtactgcccccacaa 354
>gb|BQ764168.1|BQ764168 EBan01_SQ005_F02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_F02 5', mRNA sequence
Length = 693
Score = 77.8 bits (39), Expect = 4e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 94 ccaccaacggcctgcgcatcaagtcgtacgaggactccaagtc 136
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 54 ccaccaacggcctccgcatcaagtcgtacgaggactccaagtc 96
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||||||||
Sbjct: 151 ctaccccatcatcatcgatcagaagtactgccccaacaa 189
>gb|BQ753595.1|BQ753595 EBan01_SQ004_L07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_L07 5', mRNA sequence
Length = 436
Score = 63.9 bits (32), Expect = 6e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 101 cggcctgcgcatcaagtcgtacgaggactccaagtc 136
|||||| |||||||||||||||||||||||||||||
Sbjct: 1 cggcctccgcatcaagtcgtacgaggactccaagtc 36
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||||||||
Sbjct: 91 ctaccccatcatcatcgatcagaagtactgccccaacaa 129
>gb|BQ753283.1|BQ753283 EBan01_SQ001_C11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C11 5', mRNA sequence
Length = 647
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 191 ctaccccatcatcatagaccagaagtactgccccaacaa 229
||||||||||||||| || ||||||||||||||||||||
Sbjct: 12 ctaccccatcatcatcgatcagaagtactgccccaacaa 50
>gb|AL506753.1|AL506753 AL506753 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C10T 5',
mRNA sequence
Length = 507
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 aggccacggcatcagcgtcggcagcctggggc 33
|||||||||||||||| |||||||||||||||
Sbjct: 13 aggccacggcatcagcatcggcagcctggggc 44
>gb|CB881820.1|CB881820 HM10P12w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P12
3-PRIME, mRNA sequence
Length = 608
Score = 54.0 bits (27), Expect = 6e-006
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ggccacggcatcagcgtcggcagcctggggc 33
||||||||||||||| |||||||||||||||
Sbjct: 375 ggccacggcatcagcatcggcagcctggggc 405
>gb|BE455856.2|BE455856 HVSMEg0015N01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015N01f, mRNA sequence
Length = 576
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 183 aacgtctcctaccccatcatcatagaccag 212
||||||||| ||||||||||||| ||||||
Sbjct: 158 aacgtctccaaccccatcatcatcgaccag 187
>gb|BQ470839.1|BQ470839 HX04D02r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D02
5-PRIME, mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 183 aacgtctcctaccccatcatcatagaccag 212
||||||||| ||||||||||||| ||||||
Sbjct: 482 aacgtctccaaccccatcatcatcgaccag 511
>gb|CA030305.1|CA030305 HX06K19r HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
5-PRIME, mRNA sequence
Length = 546
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 183 aacgtctcctaccccatcatcatagaccag 212
||||||||| ||||||||||||| ||||||
Sbjct: 265 aacgtctccaaccccatcatcatcgaccag 294
>gb|CB874906.1|CB874906 HX06K19w HX Hordeum vulgare subsp. vulgare cDNA clone HX06K19
3-PRIME, mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 183 aacgtctcctaccccatcatcatagaccag 212
||||||||| ||||||||||||| ||||||
Sbjct: 439 aacgtctccaaccccatcatcatcgaccag 410
>gb|AL506416.1|AL506416 AL506416 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03A18T 5',
mRNA sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.022
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 2 aggccacggcatcag-cgtcggcagcctggggc 33
||||||||||||||| | |||||||||||||||
Sbjct: 13 aggccacggcatcaggcatcggcagcctggggc 45
>gb|BI956265.1|BI956265 HVSMEn0001M08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001M08f, mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83 gctcgccggcaccaccaac 101
|||||||||||||||||||
Sbjct: 450 gctcgccggcaccaccaac 468
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,767
Number of Sequences: 312970
Number of extensions: 81767
Number of successful extensions: 23554
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23520
Number of HSP's gapped (non-prelim): 35
length of query: 642
length of database: 175,134,539
effective HSP length: 19
effective length of query: 623
effective length of database: 169,188,109
effective search space: 105404191907
effective search space used: 105404191907
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)