BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.1
(987 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 62 4e-008
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 60 1e-007
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 60 1e-007
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 60 1e-007
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 60 1e-007
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 60 1e-007
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 54 9e-006
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 52 4e-005
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 52 4e-005
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 52 4e-005
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 50 1e-004
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 50 1e-004
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 50 1e-004
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 50 1e-004
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 50 1e-004
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 50 1e-004
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 50 1e-004
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 50 1e-004
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 50 1e-004
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 50 1e-004
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 50 1e-004
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 50 1e-004
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 50 1e-004
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 50 1e-004
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 50 1e-004
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 46 0.002
gb|BF625307.2|BF625307 HVSMEa0008F17f Hordeum vulgare seedl... 44 0.009
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 42 0.034
gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedl... 42 0.034
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 40 0.14
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 40 0.14
gb|BE216443.3|BE216443 HV_CEb0010I04f Hordeum vulgare seedl... 40 0.14
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 61.9 bits (31), Expect = 4e-008
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| |||||| |||| ||||| | | ||||| ||||||||| || ||| ||||
Sbjct: 647 gtcgccggcgccgnccacgttggtcaccagcaccaggttgaagtaggagtggccgttgat 588
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| |||||||||| |||| |||| |||||| |||||| | |||||||| || |||||
Sbjct: 587 ggtgaaccggatgccccccttcttcacgcacggcacccttctgtaggagacgggtacgat 528
Query: 631 gccggc 636
||||||
Sbjct: 527 gccggc 522
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 306 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 253
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 95 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 42
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 60.0 bits (30), Expect = 1e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| |||||||||| |||| |||| |||||| |||||| | |||||||| || |
Sbjct: 110 tgatggtgaaccggatgccccccttcttcacgcacggcacccttctgtaggagacgggta 51
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 50 cgatgccggc 41
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 95 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 42
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 60.0 bits (30), Expect = 1e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| |||||||||| |||| |||| |||||| |||||| | |||||||| || |
Sbjct: 373 tgatggtgaaccggatgccccccttcttcacgcacggcacccttctgtaggagacgggta 314
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 313 cgatgccggc 304
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 323 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 270
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 200 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 147
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggaga 620
|||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 327 tgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggaga 274
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 54.0 bits (27), Expect = 9e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| |||||||||| || | |||| |||||| |||||| | |||||||| || |
Sbjct: 591 tgatggtgaaccggatgccccctttcttcacgcacggcacccttctgtaggagaggggta 532
Query: 627 cgatgccggcc 637
|||||||||||
Sbjct: 531 cgatgccggcc 521
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 52.0 bits (26), Expect = 4e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 567 tgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggca 626
|||||||| |||||||||| |||| |||| |||||| |||||| | |||||| | || |
Sbjct: 136 tgatggtgaaccggatgccccccttcttcacgcacggcacccttctgtaggaaacgggta 77
Query: 627 cgatgccggc 636
||||||||||
Sbjct: 76 cgatgccggc 67
>gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023D24f, mRNA sequence
Length = 550
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
||||||||||||||| || | ||||||||| ||||| || ||||||||||| |||||
Sbjct: 226 gtacccgcacgcgccgcccattgtgccggacgggtccccgcccccgtagaaggtggcgtg 167
Query: 949 ggcgggtttccacg 962
||||| || |||||
Sbjct: 166 ggcggtttgccacg 153
>gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C21 5', mRNA sequence
Length = 413
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
||||||||| ||||| || | ||||||||| |||| | ||||||||||| ||||||||
Sbjct: 214 gtacccgcaggcgccgcccatcgtgccggacgcgtcgccgccgccgtagaacgtcgcgtg 155
Query: 949 ggcggg 954
||||||
Sbjct: 154 ggcggg 149
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 119 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 60
Query: 953 g 953
|
Sbjct: 59 g 59
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 224 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 165
Query: 953 g 953
|
Sbjct: 164 g 164
>gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D10f, mRNA sequence
Length = 768
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 196 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 137
Query: 953 g 953
|
Sbjct: 136 g 136
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 222 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 163
Query: 953 g 953
|
Sbjct: 162 g 162
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 229 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 170
Query: 953 g 953
|
Sbjct: 169 g 169
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 81 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 22
Query: 953 g 953
|
Sbjct: 21 g 21
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 236 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 177
Query: 953 g 953
|
Sbjct: 176 g 176
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011P08f, mRNA sequence
Length = 1124
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 234 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 175
Query: 953 g 953
|
Sbjct: 174 g 174
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 243 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 184
Query: 953 g 953
|
Sbjct: 183 g 183
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014B22f, mRNA sequence
Length = 660
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 217 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 158
Query: 953 g 953
|
Sbjct: 157 g 157
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 217 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 158
Query: 953 g 953
|
Sbjct: 157 g 157
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G01f, mRNA sequence
Length = 669
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 215 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 156
Query: 953 g 953
|
Sbjct: 155 g 155
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 221 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 162
Query: 953 g 953
|
Sbjct: 161 g 161
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 232 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 173
Query: 953 g 953
|
Sbjct: 172 g 172
>gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N14
5-PRIME, mRNA sequence
Length = 294
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| |||||||||
Sbjct: 249 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcg 190
Query: 953 g 953
|
Sbjct: 189 g 189
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 911 gtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgg 953
||||||||| |||| | |||||||||||||| ||||||||||
Sbjct: 229 gtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcgg 187
>gb|BF625307.2|BF625307 HVSMEa0008F17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008F17f, mRNA sequence
Length = 472
Score = 44.1 bits (22), Expect = 0.009
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgg 949
||||||||||| || | |||| |||| |||| || |||||||||||||| ||||||
Sbjct: 237 ccgcacgcgccgcccattgtgcgggacgcgtcgcgnccgccgtagaaggtggcgtgg 181
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.034
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcg 952
||||||||||| || | ||||||||| |||| | |||||||||||||| ||||| |||
Sbjct: 194 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgtgcg 135
Query: 953 g 953
|
Sbjct: 134 g 134
>gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001D17f, mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.034
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 893 ccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgg 949
||||||||||| || | ||||||||| |||| | |||||||||||||| ||||||
Sbjct: 234 ccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtgg 178
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.14
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 794 acctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||||| ||||||||||| | |||| |||||||| |||||||||
Sbjct: 140 acctcgtagcagccgccgcaggcggcgccgcgctcgaacagcgccgtgctca 89
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.14
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 889 gtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtg 948
|||||||||||| || || |||||||||| |||| | |||||||||||||| |||||
Sbjct: 252 gtacccgcacgccccgcccatggtgccggaggcgtcgctgccgccgtagaaggtggcgtg 193
>gb|BE216443.3|BE216443 HV_CEb0010I04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010I04f, mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 334 cttccagtcagcggggagaacgtg 357
|||||||||||||| |||||||||
Sbjct: 666 cttccagtcagcggtgagaacgtg 643
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,422
Number of Sequences: 312970
Number of extensions: 122422
Number of successful extensions: 34741
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34654
Number of HSP's gapped (non-prelim): 88
length of query: 987
length of database: 175,134,539
effective HSP length: 19
effective length of query: 968
effective length of database: 169,188,109
effective search space: 163774089512
effective search space used: 163774089512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)