BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV927179.1|AV927179  AV927179 K. Sato unpublished cDNA li...    40   0.11 
gb|AV927447.1|AV927447  AV927447 K. Sato unpublished cDNA li...    40   0.11 
gb|AV929048.1|AV929048  AV929048 K. Sato unpublished cDNA li...    40   0.11 
gb|AV929049.1|AV929049  AV929049 K. Sato unpublished cDNA li...    40   0.11 
gb|AV936309.1|AV936309  AV936309 K. Sato unpublished cDNA li...    40   0.11 
gb|BM441916.2|BM441916  EBed07_SQ001_O15_R endosperm, 28 DPA...    40   0.11 
>gb|AV927179.1|AV927179 AV927179 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd0d09 3', mRNA sequence
          Length = 487

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 231 agaaaaggaagaaaagaaag 250
>gb|AV927447.1|AV927447 AV927447 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd2b19 3', mRNA sequence
          Length = 401

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 243 agaaaaggaagaaaagaaag 262
>gb|AV929048.1|AV929048 AV929048 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd20m19 3', mRNA sequence
          Length = 627

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 229 agaaaaggaagaaaagaaag 248
>gb|AV929049.1|AV929049 AV929049 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd20m20 3', mRNA sequence
          Length = 598

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 230 agaaaaggaagaaaagaaag 249
>gb|AV936309.1|AV936309 AV936309 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal10n23 3', mRNA sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 220 agaaaaggaagaaaagaaag 239
>gb|BM441916.2|BM441916 EBed07_SQ001_O15_R endosperm, 28 DPA, no treatment, cv Optic,
           EBed07 Hordeum vulgare subsp. vulgare cDNA clone
           EBed07_SQ001_O15 5', mRNA sequence
          Length = 298

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 594 agaaaaggaagaaaagaaag 613
           ||||||||||||||||||||
Sbjct: 30  agaaaaggaagaaaagaaag 11
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,672
Number of Sequences: 312970
Number of extensions: 69672
Number of successful extensions: 17580
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17574
Number of HSP's gapped (non-prelim): 6
length of query: 788
length of database: 175,134,539
effective HSP length: 19
effective length of query: 769
effective length of database: 169,188,109
effective search space: 130105655821
effective search space used: 130105655821
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)