BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071667.2.1
(597 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots... 301 1e-080
gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, sal... 278 2e-073
gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. v... 234 3e-060
gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedl... 228 2e-058
gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedl... 200 4e-050
gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedl... 133 7e-030
gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA li... 98 4e-019
gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA li... 98 4e-019
gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA li... 98 4e-019
gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA li... 98 4e-019
gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. v... 98 4e-019
gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. v... 98 4e-019
gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. v... 98 4e-019
gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day ger... 98 4e-019
gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. v... 98 4e-019
gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. v... 98 4e-019
gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. v... 98 4e-019
gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. v... 98 4e-019
gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. v... 98 4e-019
gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. v... 90 1e-016
gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike... 84 6e-015
gb|CA011076.1|CA011076 HT07A06u HT Hordeum vulgare subsp. v... 76 1e-012
gb|BQ659469.1|BQ659469 HE01H23u HE Hordeum vulgare subsp. v... 60 9e-008
gb|AW983019.2|AW983019 HVSMEg0004N09f Hordeum vulgare pre-a... 56 1e-006
gb|BE194107.2|BE194107 HVSMEh0084A24f Hordeum vulgare 5-45 ... 56 1e-006
gb|BF267540.2|BF267540 HV_CEa0018D16f Hordeum vulgare seedl... 56 1e-006
gb|BF267588.2|BF267588 HV_CEa0018F16f Hordeum vulgare seedl... 56 1e-006
gb|AV921807.1|AV921807 AV921807 K. Sato unpublished cDNA li... 56 1e-006
gb|AV931272.1|AV931272 AV931272 K. Sato unpublished cDNA li... 56 1e-006
gb|BM815988.1|BM815988 HC108H09_SK.ab1 HC Hordeum vulgare s... 56 1e-006
gb|BQ463802.1|BQ463802 HG01H17r HG Hordeum vulgare subsp. v... 56 1e-006
gb|BQ656750.1|BQ656750 HA02F05u HA Hordeum vulgare subsp. v... 56 1e-006
gb|BQ659983.1|BQ659983 HG01H17u HG Hordeum vulgare subsp. v... 56 1e-006
gb|BI776695.2|BI776695 EBpi07_SQ001_H11_R pistil, 12 DPA, n... 56 1e-006
gb|BU972798.1|BU972798 HB22L24r BC Hordeum vulgare subsp. v... 56 1e-006
gb|CA016131.1|CA016131 HV10E09u HV Hordeum vulgare subsp. v... 56 1e-006
gb|CA018967.1|CA018967 HV10E09r HV Hordeum vulgare subsp. v... 56 1e-006
gb|CA027624.1|CA027624 HZ59I04r HZ Hordeum vulgare subsp. v... 56 1e-006
gb|BJ544355.1|BJ544355 BJ544355 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ544525.1|BJ544525 BJ544525 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ545493.1|BJ545493 BJ545493 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ545810.1|BJ545810 BJ545810 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ545985.1|BJ545985 BJ545985 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546487.1|BJ546487 BJ546487 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546503.1|BJ546503 BJ546503 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ548158.1|BJ548158 BJ548158 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ548794.1|BJ548794 BJ548794 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ549890.1|BJ549890 BJ549890 K. Sato unpublished cDNA li... 56 1e-006
gb|CD663937.1|CD663937 UCRHV18_07af09_b1 Drought-stressed D... 56 1e-006
dbj|AB055519.1| Hordeum vulgare mRNA for mitochondrial alde... 56 1e-006
gb|BG300455.1|BG300455 HVSMEb0017B23f Hordeum vulgare seedl... 52 2e-005
gb|CV060332.1|CV060332 BNEL57a10 Barley EST endosperm libra... 52 2e-005
gb|BI949913.1|BI949913 HVSMEl0016O20f Hordeum vulgare spike... 48 3e-004
gb|AV913129.1|AV913129 AV913129 K. Sato unpublished cDNA li... 42 0.020
gb|AL504095.1|AL504095 AL504095 Hordeum vulgare Barke roots... 38 0.32
gb|BF064593.1|BF064593 HV_CEb0016A15f Hordeum vulgare seedl... 38 0.32
>gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05C24u 3', mRNA sequence
Length = 556
Score = 301 bits (152), Expect = 1e-080
Identities = 264/300 (88%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 290 aataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtcca 349
||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||||| |
Sbjct: 238 aataccaaggcgagtcagggactgcggtgatcacgctcttgacctgcatgtacttgtcga 297
Query: 350 tggctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgt 409
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 298 tggccatcatgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcct 357
Query: 410 ccgggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggaca 469
| |||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||
Sbjct: 358 cggggtcgaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgaccttgaca 417
Query: 470 cccgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgc 529
|| ||||||| ||||| | |||||| | |||||||||||| ||||||||| ||||||
Sbjct: 418 ccttgttggcgatgtccaagttcttggggatgatcccggcggccagcccgtacttggtgc 477
Query: 530 -agttggccttctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacgggg 588
||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 478 aagttggccttctctatcgcctcatcgaccgtcttgaacttcatgagggacatcacgggg 537
>gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_O18 5', mRNA sequence
Length = 423
Score = 278 bits (140), Expect = 2e-073
Identities = 239/272 (87%)
Strand = Plus / Minus
Query: 290 aataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtcca 349
||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||||| |
Sbjct: 273 aataccaaggcgagtcagggactgcggtgatcacgctcttgacctgcatgtacttgtcga 214
Query: 350 tggctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgt 409
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 213 tggccatcatgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcct 154
Query: 410 ccgggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggaca 469
| |||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||
Sbjct: 153 cggggtcgaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgaccttgaca 94
Query: 470 cccgattggcgacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgc 529
|| ||||||| ||||| | ||||||| | |||||||||||| ||||||||| ||||||
Sbjct: 93 ccttgttggcgatgtccaagttcttggtgatgatcccggcggccagcccgtacttggtgc 34
Query: 530 agttggccttctcgatcacctcatcaaccgtc 561
||||||||||||| ||| ||||||| ||||||
Sbjct: 33 agttggccttctctatcgcctcatcgaccgtc 2
>gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. vulgare cDNA clone HP05E21
5-PRIME, mRNA sequence
Length = 373
Score = 234 bits (118), Expect = 3e-060
Identities = 218/250 (87%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 290 aataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtcca 349
||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||||| |
Sbjct: 259 aataccaaggcgagtcagggactgcggtgatcacgctcttgacctgcatgtacttgtcga 200
Query: 350 tggctgccagcccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgt 409
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 199 tggccatcatgccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcct 140
Query: 410 ccgggtcgaaggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggaca 469
| |||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||
Sbjct: 139 cggggtcgaaggcgaagtagcagttcacccacactgtccccgcgcgaaccgaccttgaca 80
Query: 470 cccgattggcgacgtccaggctcttggtcacgatcc-cggcggcgagcccgtacctggtg 528
|| ||||||| ||||| | ||||||| | ||||| || |||| ||||||||| |||||
Sbjct: 79 ccttgttggcgatgtccaagttcttggtgatgatccacgacggccagcccgtacttggtg 20
Query: 529 cagttggcct 538
||||||||||
Sbjct: 19 cagttggcct 10
>gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002G19f, mRNA sequence
Length = 844
Score = 228 bits (115), Expect = 2e-058
Identities = 207/236 (87%), Gaps = 2/236 (0%)
Strand = Plus / Minus
Query: 362 cctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaagg 421
||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||| ||
Sbjct: 766 cctggtcccggccgaagccgctc-tcttgtacccgccgaagg-cgcctcggggtcgaggg 709
Query: 422 cgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacccgattggcga 481
||||||||||||||||| ||| || | ||||| ||||||| |||||| |||||||
Sbjct: 708 cgaagtagcagttcaccancactgtcnccgcgcgaaccgaccttgacaccttgttggcga 649
Query: 482 cgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggccttct 541
||||| | ||||||| | ||||||| |||| ||||||||| ||||||||||||||||||
Sbjct: 648 tgtccaagttcttggtgatgatcccgncggccagcccgtacttggtgcagttggccttct 589
Query: 542 cgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagatc 597
| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 ctatcgcctcatcgaccgtcttgaacttcatgagggacatcacggggccgaagatc 533
>gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P08f, mRNA sequence
Length = 727
Score = 200 bits (101), Expect = 4e-050
Identities = 204/237 (86%), Gaps = 1/237 (0%)
Strand = Plus / Minus
Query: 361 ccctggtcccggccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaag 420
||||||||||||||||| ||| || |||||||||| ||| ||||||| || |||| ||||
Sbjct: 687 ccctggtcccggccgaacccggtcttcttgtaccc-ccgcagggcgcctctgggttgaag 629
Query: 421 gcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacccgattggcg 480
|| |||||||||||||||||||| || || |||| ||||||| |||||| ||||||
Sbjct: 628 gccaagtagcagttcacccacactgtccccgcgctaaccgaccttgacaccttgttggcg 569
Query: 481 acgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggccttc 540
| ||||| | ||||||| | ||||||| |||| ||||||||| ||||||||||||| ||
Sbjct: 568 atgtccaagttcttggtgatgatcccgccggccagcccgtacttggtgcagttggcgttg 509
Query: 541 tcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagatc 597
|| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 508 tctatcgcctcatcgaccgtcttgaacttcatgagggacatcacggggccgaagatc 452
>gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021K17f, mRNA sequence
Length = 542
Score = 133 bits (67), Expect = 7e-030
Identities = 85/91 (93%)
Strand = Plus / Minus
Query: 507 ggcggcgagcccgtacctggtgcagttggccttctcgatcacctcatcaaccgtcttgaa 566
|||||| ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct: 542 ggcggccagcccgtacttggtgcagttggccttctctatcgcctcatcgaccgtcttgaa 483
Query: 567 cttcatgagggacatgacggggccgaagatc 597
||||||||||||||| |||||||||||||||
Sbjct: 482 cttcatgagggacatcacggggccgaagatc 452
>gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11p17 3', mRNA sequence
Length = 614
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 152 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 211
Query: 432 gttcaccca 440
||| |||||
Sbjct: 212 gttaaccca 220
>gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11e16 3', mRNA sequence
Length = 636
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 209 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 268
Query: 432 gttcaccca 440
||| |||||
Sbjct: 269 gttaaccca 277
>gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 5', mRNA sequence
Length = 670
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 556 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 497
Query: 432 gttcaccca 440
||| |||||
Sbjct: 496 gttaaccca 488
>gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 3', mRNA sequence
Length = 706
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 150 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 209
Query: 432 gttcaccca 440
||| |||||
Sbjct: 210 gttaaccca 218
>gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
5-PRIME, mRNA sequence
Length = 511
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 314 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 255
Query: 432 gttcaccca 440
||| |||||
Sbjct: 254 gttaaccca 246
>gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B02
5-PRIME, mRNA sequence
Length = 438
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 191 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 250
Query: 432 gttcaccca 440
||| |||||
Sbjct: 251 gttaaccca 259
>gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
3-PRIME, mRNA sequence
Length = 475
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 199 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 258
Query: 432 gttcaccca 440
||| |||||
Sbjct: 259 gttaaccca 267
>gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N02 5', mRNA sequence
Length = 347
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 48 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 107
Query: 432 gttcaccca 440
||| |||||
Sbjct: 108 gttaaccca 116
>gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA25C12
5-PRIME, mRNA sequence
Length = 572
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 384 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 325
Query: 432 gttcaccca 440
||| |||||
Sbjct: 324 gttaaccca 316
>gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. vulgare cDNA clone HF03J09
5-PRIME, mRNA sequence
Length = 526
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 485 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 426
Query: 432 gttcaccca 440
||| |||||
Sbjct: 425 gttaaccca 417
>gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS07N10
3-PRIME, mRNA sequence
Length = 574
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 149 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 208
Query: 432 gttcaccca 440
||| |||||
Sbjct: 209 gttaaccca 217
>gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. vulgare cDNA clone HT12M08
3-PRIME, mRNA sequence
Length = 532
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 217 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 276
Query: 432 gttcaccca 440
||| |||||
Sbjct: 277 gttaaccca 285
>gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. vulgare cDNA clone HT14K09
5-PRIME, mRNA sequence
Length = 584
Score = 97.6 bits (49), Expect = 4e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct: 368 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtagca 309
Query: 432 gttcaccca 440
||| |||||
Sbjct: 308 gttaaccca 300
>gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40A05
5-PRIME, mRNA sequence
Length = 530
Score = 89.7 bits (45), Expect = 1e-016
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 372 gccgaagccgctcatcttgtacccgccgaagggcgcgtccgggtcgaaggcgaagtagca 431
||||||||||||||||||| | |||||||| || ||||||||||||||||||||||| ||
Sbjct: 199 gccgaagccgctcatcttgcagccgccgaacggggcgtccgggtcgaaggcgaagtatca 258
Query: 432 gttcaccca 440
||| |||||
Sbjct: 259 gttaaccca 267
>gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011N01f, mRNA sequence
Length = 525
Score = 83.8 bits (42), Expect = 6e-015
Identities = 144/178 (80%)
Strand = Plus / Minus
Query: 420 ggcgaagtagcagttcacccacacggtgccggcgcgcaccgaccgggacacccgattggc 479
|||||||||||||||||||||||| ||||| || | |||||| | || || |||||
Sbjct: 239 ggcgaagtagcagttcacccacaccaccccggcacggatcgaccgcgtcatcctgttggc 180
Query: 480 gacgtccaggctcttggtcacgatcccggcggcgagcccgtacctggtgcagttggcctt 539
||||| | | |||||||||| | ||| || || ||||||||||| ||| ||||||| |
Sbjct: 179 cacgtcgatgttcttggtcaccacccccgccgccagcccgtacctcgtgttgttggccct 120
Query: 540 ctcgatcacctcatcaaccgtcttgaacttcatgagggacatgacggggccgaagatc 597
| ||||| |||| || ||||| |||||||||| ||| |||||||||| |||||||||
Sbjct: 119 cgcgatcgcctcctccaccgtggtgaacttcatcaggcacatgacgggcccgaagatc 62
>gb|CA011076.1|CA011076 HT07A06u HT Hordeum vulgare subsp. vulgare cDNA clone HT07A06
3-PRIME, mRNA sequence
Length = 235
Score = 75.8 bits (38), Expect = 1e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 290 aataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtacttgtcca 349
||||||| |||||||| |||| |||||||| |||||||||||||||| ||||||||| |
Sbjct: 150 aataccaaggcgagtcagggactgcggtgatcacgctcttgacctgcatgtacttgtcga 209
Query: 350 tggctgccagcccctggtcccggccg 375
|||| || |||||||||||||||
Sbjct: 210 tggccatcatgccctggtcccggccg 235
>gb|BQ659469.1|BQ659469 HE01H23u HE Hordeum vulgare subsp. vulgare cDNA clone HE01H23
3-PRIME, mRNA sequence
Length = 264
Score = 60.0 bits (30), Expect = 9e-008
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 290 aataccatggcgagtccgggagcgcggtgatgacgctcttgacctgcaggtact 343
||||||| |||||||| |||| |||||||| |||||||||||||||| |||||
Sbjct: 211 aataccaaggcgagtcagggactgcggtgatcacgctcttgacctgcatgtact 264
>gb|AW983019.2|AW983019 HVSMEg0004N09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004N09f, mRNA sequence
Length = 614
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 308 ccgatgccgctcatcttgtacccgccgaaggg 277
>gb|BE194107.2|BE194107 HVSMEh0084A24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0084A24f, mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 222 ccgatgccgctcatcttgtacccgccgaaggg 191
>gb|BF267540.2|BF267540 HV_CEa0018D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018D16f, mRNA sequence
Length = 803
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 475 ccgatgccgctcatcttgtacccgccgaaggg 444
>gb|BF267588.2|BF267588 HV_CEa0018F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F16f, mRNA sequence
Length = 808
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 475 ccgatgccgctcatcttgtacccgccgaaggg 444
>gb|AV921807.1|AV921807 AV921807 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12o18 3', mRNA sequence
Length = 657
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 325 ccgatgccgctcatcttgtacccgccgaaggg 356
>gb|AV931272.1|AV931272 AV931272 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19d07 3', mRNA sequence
Length = 556
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 293 ccgatgccgctcatcttgtacccgccgaaggg 324
>gb|BM815988.1|BM815988 HC108H09_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108H09_SK.ab1 similar to aldehyde dehydrogenase [Oryza
sativa], T-cytoplasm male sterility restorer factor 2
[Zea mays],aldehyde dehydrogenase (NAD) (EC 1.2.1.3) 2A
precursor, mitochondrial [Nicotiana tabacum],aldehyde
dehydrogenase ALDH2b [Oryza sativa], mRNA sequence
Length = 896
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 424 ccgatgccgctcatcttgtacccgccgaaggg 393
>gb|BQ463802.1|BQ463802 HG01H17r HG Hordeum vulgare subsp. vulgare cDNA clone HG01H17
5-PRIME, mRNA sequence
Length = 462
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 358 ccgatgccgctcatcttgtacccgccgaaggg 389
>gb|BQ656750.1|BQ656750 HA02F05u HA Hordeum vulgare subsp. vulgare cDNA clone HA02F05
3-PRIME, mRNA sequence
Length = 549
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 332 ccgatgccgctcatcttgtacccgccgaaggg 363
>gb|BQ659983.1|BQ659983 HG01H17u HG Hordeum vulgare subsp. vulgare cDNA clone HG01H17
3-PRIME, mRNA sequence
Length = 461
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 104 ccgatgccgctcatcttgtacccgccgaaggg 73
>gb|BI776695.2|BI776695 EBpi07_SQ001_H11_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_H11 5', mRNA sequence
Length = 481
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 366 ccgatgccgctcatcttgtacccgccgaaggg 335
>gb|BU972798.1|BU972798 HB22L24r BC Hordeum vulgare subsp. vulgare cDNA clone HB22L24
5-PRIME, mRNA sequence
Length = 629
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 410 ccgatgccgctcatcttgtacccgccgaaggg 379
>gb|CA016131.1|CA016131 HV10E09u HV Hordeum vulgare subsp. vulgare cDNA clone HV10E09
3-PRIME, mRNA sequence
Length = 488
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 423 ccgatgccgctcatcttgtacccgccgaaggg 454
>gb|CA018967.1|CA018967 HV10E09r HV Hordeum vulgare subsp. vulgare cDNA clone HV10E09
5-PRIME, mRNA sequence
Length = 298
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 236 ccgatgccgctcatcttgtacccgccgaaggg 205
>gb|CA027624.1|CA027624 HZ59I04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59I04
5-PRIME, mRNA sequence
Length = 374
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 157 ccgatgccgctcatcttgtacccgccgaaggg 188
>gb|BJ544355.1|BJ544355 BJ544355 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26h06 5', mRNA sequence
Length = 638
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 548 ccgatgccgctcatcttgtacccgccgaaggg 517
>gb|BJ544525.1|BJ544525 BJ544525 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30h11 5', mRNA sequence
Length = 696
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 560 ccgatgccgctcatcttgtacccgccgaaggg 529
>gb|BJ545493.1|BJ545493 BJ545493 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17a20 3', mRNA sequence
Length = 586
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 340 ccgatgccgctcatcttgtacccgccgaaggg 371
>gb|BJ545810.1|BJ545810 BJ545810 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26h06 3', mRNA sequence
Length = 672
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 340 ccgatgccgctcatcttgtacccgccgaaggg 371
>gb|BJ545985.1|BJ545985 BJ545985 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30h11 3', mRNA sequence
Length = 624
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 312 ccgatgccgctcatcttgtacccgccgaaggg 343
>gb|BJ546487.1|BJ546487 BJ546487 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42a08 3', mRNA sequence
Length = 557
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 342 ccgatgccgctcatcttgtacccgccgaaggg 373
>gb|BJ546503.1|BJ546503 BJ546503 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42e14 3', mRNA sequence
Length = 530
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 316 ccgatgccgctcatcttgtacccgccgaaggg 347
>gb|BJ548158.1|BJ548158 BJ548158 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13d19 3', mRNA sequence
Length = 620
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 315 ccgatgccgctcatcttgtacccgccgaaggg 346
>gb|BJ548794.1|BJ548794 BJ548794 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35m14 3', mRNA sequence
Length = 581
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 306 ccgatgccgctcatcttgtacccgccgaaggg 337
>gb|BJ549890.1|BJ549890 BJ549890 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35f16 3', mRNA sequence
Length = 480
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 325 ccgatgccgctcatcttgtacccgccgaaggg 356
>gb|CD663937.1|CD663937 UCRHV18_07af09_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07af09, mRNA sequence
Length = 372
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 303 ccgatgccgctcatcttgtacccgccgaaggg 334
>dbj|AB055519.1| Hordeum vulgare mRNA for mitochondrial aldehyde dehydrogenase ALDH2,
complete cds
Length = 2128
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 373 ccgaagccgctcatcttgtacccgccgaaggg 404
|||| |||||||||||||||||||||||||||
Sbjct: 1646 ccgatgccgctcatcttgtacccgccgaaggg 1615
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,986
Number of Sequences: 312970
Number of extensions: 67986
Number of successful extensions: 19227
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19117
Number of HSP's gapped (non-prelim): 101
length of query: 597
length of database: 175,134,539
effective HSP length: 19
effective length of query: 578
effective length of database: 169,188,109
effective search space: 97790727002
effective search space used: 97790727002
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)