BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI957257.1|BI957257 HVSMEn0008H11f Hordeum vulgare rachi... 46 0.003
gb|BI957606.1|BI957606 HVSMEn0010F15f Hordeum vulgare rachi... 46 0.003
gb|BI958645.1|BI958645 HVSMEn0016A21f Hordeum vulgare rachi... 46 0.003
gb|BI959987.1|BI959987 HVSMEn0022M02f Hordeum vulgare rachi... 46 0.003
gb|BI960501.1|BI960501 HVSMEn0024N01f Hordeum vulgare rachi... 46 0.003
gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-a... 46 0.003
gb|BG344915.2|BG344915 HVSMEg0016N12f Hordeum vulgare pre-a... 46 0.003
gb|BM816002.1|BM816002 HC109C02_T3.ab1 HC Hordeum vulgare s... 44 0.013
gb|BJ464699.1|BJ464699 BJ464699 K. Sato unpublished cDNA li... 44 0.013
gb|BJ467098.1|BJ467098 BJ467098 K. Sato unpublished cDNA li... 44 0.013
gb|BQ760592.1|BQ760592 EBro03_SQ001_O04_R root, 3 week, wat... 44 0.013
gb|CA012415.1|CA012415 HT05F22r HT Hordeum vulgare subsp. v... 44 0.013
gb|CA012497.1|CA012497 HT05J12r HT Hordeum vulgare subsp. v... 44 0.013
gb|CA014377.1|CA014377 HT11C22r HT Hordeum vulgare subsp. v... 44 0.013
gb|AL506730.1|AL506730 AL506730 Hordeum vulgare Barke devel... 42 0.050
gb|BF627211.2|BF627211 HVSMEb0004D24f Hordeum vulgare seedl... 42 0.050
gb|BG344457.1|BG344457 HVSMEg0009F07f Hordeum vulgare pre-a... 42 0.050
gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachi... 42 0.050
gb|BI957639.1|BI957639 HVSMEn0010H12f Hordeum vulgare rachi... 42 0.050
gb|BM444561.1|BM444561 EBem09_SQ005_L13_R embryo, 1 Day ger... 42 0.050
gb|BQ458828.1|BQ458828 HA04B19r HA Hordeum vulgare subsp. v... 42 0.050
gb|BQ459118.1|BQ459118 HA02E05r HA Hordeum vulgare subsp. v... 42 0.050
gb|BQ463149.1|BQ463149 HI04D08r HI Hordeum vulgare subsp. v... 42 0.050
gb|BM097622.2|BM097622 EBem04_SQ002_D20_R embryo, 12 DPA, n... 42 0.050
gb|BM377848.2|BM377848 EBem04_SQ004_F22_R embryo, 12 DPA, n... 42 0.050
gb|BM369169.2|BM369169 EBem07_SQ002_M09_R embryo, 28 DPA, n... 42 0.050
gb|BM369549.2|BM369549 EBem07_SQ003_O20_R embryo, 28 DPA, n... 42 0.050
gb|BM099615.2|BM099615 EBes01_SQ003_L15_R embryo sac, 4-6 D... 42 0.050
gb|BI781053.2|BI781053 EBma03_SQ001_E11_R maternal, 8 DPA, ... 42 0.050
gb|BM097067.2|BM097067 EBpi07_SQ002_E17_R pistil, 12 DPA, n... 42 0.050
gb|BI779247.2|BI779247 EBro01_SQ003_H03_R root, 3 week, hyd... 42 0.050
gb|BU978420.1|BU978420 HA13C22r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU982028.1|BU982028 HA25F03r HA Hordeum vulgare subsp. v... 42 0.050
gb|BU995632.1|BU995632 HM10N08r HM Hordeum vulgare subsp. v... 42 0.050
gb|BU997575.1|BU997575 HI08G07r HI Hordeum vulgare subsp. v... 42 0.050
gb|CA021096.1|CA021096 HZ39B13r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA027047.1|CA027047 HZ57L23r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA027281.1|CA027281 HZ58G20r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA027917.1|CA027917 HZ60H01r HZ Hordeum vulgare subsp. v... 42 0.050
gb|CA030091.1|CA030091 HX06B01r HX Hordeum vulgare subsp. v... 42 0.050
gb|CA032156.1|CA032156 HX12D02r HX Hordeum vulgare subsp. v... 42 0.050
gb|CB874701.1|CB874701 HX06B01w HX Hordeum vulgare subsp. v... 42 0.050
gb|CV063226.1|CV063226 BNEL88a11 Barley EST endosperm libra... 42 0.050
gb|CK122574.1|CK122574 BES1824104h10 BES1824 Hordeum vulgar... 42 0.050
gb|CK123190.1|CK123190 BES1824102g08 BES1824 Hordeum vulgar... 42 0.050
gb|CK123199.1|CK123199 BES1824102h11 BES1824 Hordeum vulgar... 42 0.050
gb|CK123984.1|CK123984 BES1824106f20 BES1824 Hordeum vulgar... 42 0.050
gb|M60175.1|BLYMUB1 Barley ubiquitin (mub1) gene, complete cds 42 0.050
gb|AL501758.1|AL501758 AL501758 Hordeum vulgare Barke roots... 40 0.20
gb|AL506165.1|AL506165 AL506165 Hordeum vulgare Barke devel... 40 0.20
gb|AW982411.2|AW982411 HVSMEg0003D05f Hordeum vulgare pre-a... 40 0.20
gb|CV054623.1|CV054623 BNEL111e3 Barley EST endosperm libra... 40 0.20
gb|CV055020.1|CV055020 BNEL115h5 Barley EST endosperm libra... 40 0.20
gb|CV055312.1|CV055312 BNEL119b5 Barley EST endosperm libra... 40 0.20
gb|CV056532.1|CV056532 BNEL18H10 Barley EST endosperm libra... 40 0.20
gb|CV056930.1|CV056930 BNEL22b7 Barley EST endosperm librar... 40 0.20
gb|CV057556.1|CV057556 BNEL29b6 Barley EST endosperm librar... 40 0.20
gb|CV057644.1|CV057644 BNEL2B5 Barley EST endosperm library... 40 0.20
gb|CV057859.1|CV057859 BNEL31f12 Barley EST endosperm libra... 40 0.20
gb|CV058372.1|CV058372 BNEL37d10 Barley EST endosperm libra... 40 0.20
gb|CV058566.1|CV058566 BNEL39d4 Barley EST endosperm librar... 40 0.20
gb|CV059810.1|CV059810 BNEL51c1 Barley EST endosperm librar... 40 0.20
gb|CV059857.1|CV059857 BNEL51g1 Barley EST endosperm librar... 40 0.20
gb|CV061056.1|CV061056 BNEL64e1 Barley EST endosperm librar... 40 0.20
gb|CV064072.1|CV064072 BNEL97c11 Barley EST endosperm libra... 40 0.20
dbj|AB032839.1| Hordeum vulgare HVP1 mRNA for vacuolar prot... 40 0.20
>gb|BI957257.1|BI957257 HVSMEn0008H11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0008H11f,
mRNA sequence
Length = 446
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 178 cgccatggtggtggatggcgtcggcgatgccgaggtcca 140
>gb|BI957606.1|BI957606 HVSMEn0010F15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010F15f,
mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 171 cgccatggtggtggatggcgtcggcgatgccgaggtcca 133
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 281 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 237
>gb|BI958645.1|BI958645 HVSMEn0016A21f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016A21f,
mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 178 cgccatggtggtggatggcgtcggcgatgccgaggtcca 140
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 288 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 244
>gb|BI959987.1|BI959987 HVSMEn0022M02f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022M02f,
mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 171 cgccatggtggtggatggcgtcggcgatgccgaggtcca 133
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 281 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 237
>gb|BI960501.1|BI960501 HVSMEn0024N01f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024N01f,
mRNA sequence
Length = 660
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 170 cgccatggtggtggatggcgtcggcgatgccgaggtcca 132
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 280 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 236
>gb|BG343272.2|BG343272 HVSMEg0005E13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005E13f, mRNA sequence
Length = 992
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 176 cgccatggtggtggatggcgtcggcgatgccgaggtcca 138
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 286 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 242
>gb|BG344915.2|BG344915 HVSMEg0016N12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N12f, mRNA sequence
Length = 635
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1195 cgccgtggtggtggatcgcgtcggggatgcggaggtcca 1233
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 177 cgccatggtggtggatggcgtcggcgatgccgaggtcca 139
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 287 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 243
>gb|BM816002.1|BM816002 HC109C02_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109C02_T3.ab1, mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 174 ggcggcggcgatggtggcggcg 195
>gb|BJ464699.1|BJ464699 BJ464699 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35p23 5', mRNA sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 113 ggcggcggcgatggtggcggcg 134
>gb|BJ467098.1|BJ467098 BJ467098 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35p23 3', mRNA sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 395 ggcggcggcgatggtggcggcg 374
>gb|BQ760592.1|BQ760592 EBro03_SQ001_O04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ001_O04 5', mRNA sequence
Length = 461
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 72 ggcggcggcgatggtggcggcg 93
>gb|CA012415.1|CA012415 HT05F22r HT Hordeum vulgare subsp. vulgare cDNA clone HT05F22
5-PRIME, mRNA sequence
Length = 496
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 84 ggcggcggcgatggtggcggcg 105
>gb|CA012497.1|CA012497 HT05J12r HT Hordeum vulgare subsp. vulgare cDNA clone HT05J12
5-PRIME, mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 84 ggcggcggcgatggtggcggcg 105
>gb|CA014377.1|CA014377 HT11C22r HT Hordeum vulgare subsp. vulgare cDNA clone HT11C22
5-PRIME, mRNA sequence
Length = 638
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcg 668
||||||||||||||||||||||
Sbjct: 115 ggcggcggcgatggtggcggcg 136
>gb|AL506730.1|AL506730 AL506730 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04B09T 5',
mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 44 gcggcggcgacggtggcggcggcgc 20
>gb|BF627211.2|BF627211 HVSMEb0004D24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D24f, mRNA sequence
Length = 793
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||| ||||||||||||||
Sbjct: 64 ggcggcggcggtggtggcggcggcg 40
>gb|BG344457.1|BG344457 HVSMEg0009F07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009F07f, mRNA sequence
Length = 809
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||| ||||||||||||||
Sbjct: 66 ggcggcggcggtggtggcggcggcg 42
>gb|BI956571.1|BI956571 HVSMEn0004D06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0004D06f,
mRNA sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 62 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 18
>gb|BI957639.1|BI957639 HVSMEn0010H12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010H12f,
mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1082 gacgctgaagatgcccgtgacggtgagcacgcgcatgaggcggcg 1126
||||||||||| ||| | ||| |||||||| ||||| ||||||||
Sbjct: 268 gacgctgaagacgccggagacagtgagcacacgcataaggcggcg 224
>gb|BM444561.1|BM444561 EBem09_SQ005_L13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_L13 5', mRNA sequence
Length = 309
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 1 gcggcggcgacggtggcggcggcgc 25
>gb|BQ458828.1|BQ458828 HA04B19r HA Hordeum vulgare subsp. vulgare cDNA clone HA04B19
5-PRIME, mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 64 gcggcggcgacggtggcggcggcgc 40
>gb|BQ459118.1|BQ459118 HA02E05r HA Hordeum vulgare subsp. vulgare cDNA clone HA02E05
5-PRIME, mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 64 gcggcggcgacggtggcggcggcgc 40
>gb|BQ463149.1|BQ463149 HI04D08r HI Hordeum vulgare subsp. vulgare cDNA clone HI04D08
5-PRIME, mRNA sequence
Length = 338
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 64 gcggcggcgacggtggcggcggcgc 40
>gb|BM097622.2|BM097622 EBem04_SQ002_D20_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D20 5', mRNA sequence
Length = 548
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 61 gcggcggcgacggtggcggcggcgc 37
>gb|BM377848.2|BM377848 EBem04_SQ004_F22_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_F22 5', mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 48 gcggcggcgacggtggcggcggcgc 24
>gb|BM369169.2|BM369169 EBem07_SQ002_M09_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ002_M09 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 50 gcggcggcgacggtggcggcggcgc 26
>gb|BM369549.2|BM369549 EBem07_SQ003_O20_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_O20 5', mRNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 38 gcggcggcgacggtggcggcggcgc 14
>gb|BM099615.2|BM099615 EBes01_SQ003_L15_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_L15 5', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 26 gcggcggcgacggtggcggcggcgc 2
>gb|BI781053.2|BI781053 EBma03_SQ001_E11_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_E11 5', mRNA sequence
Length = 406
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 36 gcggcggcgacggtggcggcggcgc 12
>gb|BM097067.2|BM097067 EBpi07_SQ002_E17_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_E17 5', mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 48 gcggcggcgacggtggcggcggcgc 24
>gb|BI779247.2|BI779247 EBro01_SQ003_H03_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_H03 5', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 50 gcggcggcgacggtggcggcggcgc 26
>gb|BU978420.1|BU978420 HA13C22r HA Hordeum vulgare subsp. vulgare cDNA clone HA13C22
5-PRIME, mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 42 gcggcggcgacggtggcggcggcgc 18
>gb|BU982028.1|BU982028 HA25F03r HA Hordeum vulgare subsp. vulgare cDNA clone HA25F03
5-PRIME, mRNA sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 64 gcggcggcgacggtggcggcggcgc 40
>gb|BU995632.1|BU995632 HM10N08r HM Hordeum vulgare subsp. vulgare cDNA clone HM10N08
5-PRIME, mRNA sequence
Length = 266
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 52 gcggcggcgacggtggcggcggcgc 28
>gb|BU997575.1|BU997575 HI08G07r HI Hordeum vulgare subsp. vulgare cDNA clone HI08G07
5-PRIME, mRNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 47 gcggcggcgacggtggcggcggcgc 23
>gb|CA021096.1|CA021096 HZ39B13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B13
5-PRIME, mRNA sequence
Length = 468
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 48 gcggcggcgacggtggcggcggcgc 24
>gb|CA027047.1|CA027047 HZ57L23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57L23
5-PRIME, mRNA sequence
Length = 164
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 37 gcggcggcgacggtggcggcggcgc 13
>gb|CA027281.1|CA027281 HZ58G20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58G20
5-PRIME, mRNA sequence
Length = 243
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||| ||||||||||||||
Sbjct: 63 ggcggcggcggtggtggcggcggcg 39
>gb|CA027917.1|CA027917 HZ60H01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60H01
5-PRIME, mRNA sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 46 gcggcggcgacggtggcggcggcgc 22
>gb|CA030091.1|CA030091 HX06B01r HX Hordeum vulgare subsp. vulgare cDNA clone HX06B01
5-PRIME, mRNA sequence
Length = 317
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 49 gcggcggcgacggtggcggcggcgc 25
>gb|CA032156.1|CA032156 HX12D02r HX Hordeum vulgare subsp. vulgare cDNA clone HX12D02
5-PRIME, mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 66 gcggcggcgacggtggcggcggcgc 42
>gb|CB874701.1|CB874701 HX06B01w HX Hordeum vulgare subsp. vulgare cDNA clone HX06B01
3-PRIME, mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 635 gcggcggcgacggtggcggcggcgc 659
>gb|CV063226.1|CV063226 BNEL88a11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88a11 5' similar to
Adenylosuccinate synthetase, chloroplast precursor, mRNA
sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||| ||||||||||||||
Sbjct: 46 ggcggcggcggtggtggcggcggcg 22
>gb|CK122574.1|CK122574 BES1824104h10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H104 5-PRIME, mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 53 gcggcggcgacggtggcggcggcgc 29
>gb|CK123190.1|CK123190 BES1824102g08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G082 5-PRIME, mRNA sequence
Length = 730
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 53 gcggcggcgacggtggcggcggcgc 29
>gb|CK123199.1|CK123199 BES1824102h11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H112 5-PRIME, mRNA sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 50 gcggcggcgacggtggcggcggcgc 26
>gb|CK123984.1|CK123984 BES1824106f20 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F206 5-PRIME, mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||| ||||||||||||||
Sbjct: 41 ggcggcggcggtggtggcggcggcg 17
>gb|M60175.1|BLYMUB1 Barley ubiquitin (mub1) gene, complete cds
Length = 1815
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 648 gcggcggcgatggtggcggcggcgc 672
|||||||||| ||||||||||||||
Sbjct: 524 gcggcggcgacggtggcggcggcgc 500
>gb|AL501758.1|AL501758 AL501758 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05E10u 3', mRNA sequence
Length = 411
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 214 aaggatagacctcgatgatg 233
||||||||||||||||||||
Sbjct: 268 aaggatagacctcgatgatg 287
>gb|AL506165.1|AL506165 AL506165 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02E02T 5',
mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 cgccggcgccgtggtggtgg 1208
||||||||||||||||||||
Sbjct: 135 cgccggcgccgtggtggtgg 116
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,933
Number of Sequences: 312970
Number of extensions: 204933
Number of successful extensions: 62601
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62492
Number of HSP's gapped (non-prelim): 109
length of query: 1432
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1413
effective length of database: 169,188,109
effective search space: 239062798017
effective search space used: 239062798017
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)