BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedl... 343 4e-093
gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA li... 208 1e-052
gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA li... 208 1e-052
gb|CA022080.1|CA022080 HZ42B20r HZ Hordeum vulgare subsp. v... 208 1e-052
gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA li... 180 3e-044
gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike... 176 5e-043
gb|BM372933.2|BM372933 EBma04_SQ002_H02_R maternal, 10 DPA,... 174 2e-042
gb|CA019539.1|CA019539 HV12E21r HV Hordeum vulgare subsp. v... 170 3e-041
gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA li... 168 1e-040
gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 ... 165 2e-039
gb|CA026694.1|CA026694 HZ56K16r HZ Hordeum vulgare subsp. v... 157 5e-037
gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA li... 153 7e-036
gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA li... 153 7e-036
gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA li... 153 7e-036
gb|BJ469713.1|BJ469713 BJ469713 K. Sato unpublished cDNA li... 153 7e-036
gb|BJ476805.1|BJ476805 BJ476805 K. Sato unpublished cDNA li... 153 7e-036
gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Le... 147 5e-034
gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DA... 147 5e-034
gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedl... 147 5e-034
gb|BI947731.1|BI947731 HVSMEl0006K11f Hordeum vulgare spike... 145 2e-033
gb|CD663592.1|CD663592 UCRHV18_06aa04_b1 Drought-stressed D... 145 2e-033
gb|AL499683.1|AL499683 AL499683 Hordeum vulgare Barke etiol... 139 1e-031
gb|BI951167.1|BI951167 HVSMEl0024N04f Hordeum vulgare spike... 139 1e-031
gb|BE195244.3|BE195244 HVSMEh0088K24f Hordeum vulgare 5-45 ... 139 1e-031
gb|CB877034.1|CB877034 HP03F07T HP Hordeum vulgare subsp. v... 139 1e-031
gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Le... 135 2e-030
gb|CB879697.1|CB879697 HP03F07w HP Hordeum vulgare subsp. v... 131 3e-029
gb|BI947511.1|BI947511 HVSMEl0005L16f Hordeum vulgare spike... 129 1e-028
gb|BI948372.1|BI948372 HVSMEl0009E13f Hordeum vulgare spike... 129 1e-028
gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA li... 129 1e-028
gb|BJ459432.1|BJ459432 BJ459432 K. Sato unpublished cDNA li... 129 1e-028
gb|CA022259.1|CA022259 HZ42J20r HZ Hordeum vulgare subsp. v... 129 1e-028
gb|BM444668.1|BM444668 EBem09_SQ006_C06_R embryo, 1 Day ger... 121 3e-026
gb|BM372862.1|BM372862 EBma04_SQ002_D08_R maternal, 10 DPA,... 119 1e-025
gb|BQ662085.1|BQ662085 HR01H21u HR Hordeum vulgare subsp. v... 119 1e-025
gb|CB876675.1|CB876675 HP02A05T HP Hordeum vulgare subsp. v... 113 6e-024
gb|AL500402.1|AL500402 AL500402 Hordeum vulgare Barke etiol... 111 3e-023
gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DA... 111 3e-023
gb|BM368822.1|BM368822 EBem08_SQ004_L06_R embryo, 40 DPA, n... 109 1e-022
gb|CB858429.1|CB858429 HI06P17w HI Hordeum vulgare subsp. v... 107 4e-022
gb|CB879149.1|CB879149 HP11B19T HP Hordeum vulgare subsp. v... 107 4e-022
gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Li... 105 2e-021
gb|BG415997.2|BG415997 HVSMEk0009F15f Hordeum vulgare testa... 105 2e-021
gb|AV935825.1|AV935825 AV935825 K. Sato unpublished cDNA li... 105 2e-021
gb|BQ659497.1|BQ659497 HE01J14u HE Hordeum vulgare subsp. v... 105 2e-021
gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA li... 103 6e-021
gb|AV931076.1|AV931076 AV931076 K. Sato unpublished cDNA li... 101 2e-020
gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA li... 101 2e-020
gb|BQ757012.1|BQ757012 EBem10_SQ002_I05_R embryo, 2 Day ger... 101 2e-020
gb|BG365157.2|BG365157 HVSMEi0001I15f Hordeum vulgare 20 DA... 100 1e-019
gb|BQ465191.1|BQ465191 HU02O12r HU Hordeum vulgare subsp. v... 100 1e-019
gb|BQ466147.1|BQ466147 HT01L11T HT Hordeum vulgare subsp. v... 100 1e-019
gb|BQ663496.1|BQ663496 HU02O12u HU Hordeum vulgare subsp. v... 100 1e-019
gb|CA010697.1|CA010697 HT08P16u HT Hordeum vulgare subsp. v... 100 1e-019
gb|CA013166.1|CA013166 HT07J12r HT Hordeum vulgare subsp. v... 100 1e-019
gb|CA013604.1|CA013604 HT08P16r HT Hordeum vulgare subsp. v... 100 1e-019
gb|CA013940.1|CA013940 HT09O20r HT Hordeum vulgare subsp. v... 100 1e-019
gb|CA014232.1|CA014232 HT10M05r HT Hordeum vulgare subsp. v... 100 1e-019
gb|CA015968.1|CA015968 HV10J02u HV Hordeum vulgare subsp. v... 100 1e-019
gb|CA016825.1|CA016825 HV05P04u HV Hordeum vulgare subsp. v... 100 1e-019
gb|U02287.1|HVU02287 Hordeum vulgare cultivar NK1558 chitin... 98 4e-019
emb|X15349.1|HVENDCHT Barley (H.vulgare) mRNA for endochiti... 98 4e-019
gb|AL450510.1|AL450510 AL450510 Hordeum vulgare Barke etiol... 96 2e-018
gb|BQ465942.1|BQ465942 HT01C02T HT Hordeum vulgare subsp. v... 92 2e-017
gb|BQ466541.1|BQ466541 HT02N08r HT Hordeum vulgare subsp. v... 92 2e-017
gb|BI780034.2|BI780034 EBma08_SQ001_D14_R maternal, 28 DPA,... 92 2e-017
gb|BM096890.2|BM096890 EBma08_SQ001_O17_R maternal, 28 DPA,... 92 2e-017
gb|BM371442.2|BM371442 EBma08_SQ002_M02_R maternal, 28 DPA,... 92 2e-017
gb|BU984341.1|BU984341 HF03K16r HF Hordeum vulgare subsp. v... 92 2e-017
gb|BU988906.1|BU988906 HF19B23r HF Hordeum vulgare subsp. v... 92 2e-017
gb|CA013184.1|CA013184 HT07K10r HT Hordeum vulgare subsp. v... 92 2e-017
gb|CA013444.1|CA013444 HT08H14r HT Hordeum vulgare subsp. v... 92 2e-017
gb|CA016532.1|CA016532 HV08G01u HV Hordeum vulgare subsp. v... 92 2e-017
gb|BG365754.2|BG365754 HVSMEi0004B04f Hordeum vulgare 20 DA... 90 9e-017
gb|BG368852.1|BG368852 HVSMEi0020P03f Hordeum vulgare 20 DA... 88 4e-016
gb|AL502023.1|AL502023 AL502023 Hordeum vulgare Barke roots... 86 1e-015
gb|BG368854.1|BG368854 HVSMEi0020P07f Hordeum vulgare 20 DA... 86 1e-015
gb|BI949464.1|BI949464 HVSMEl0014A17f Hordeum vulgare spike... 86 1e-015
gb|BM441893.2|BM441893 EBed07_SQ001_N14_R endosperm, 28 DPA... 84 6e-015
gb|BQ755807.1|BQ755807 EBed07_SQ003_N15_R endosperm, 28 DPA... 84 6e-015
gb|BG365857.2|BG365857 HVSMEi0004I09f Hordeum vulgare 20 DA... 80 9e-014
gb|BJ451756.1|BJ451756 BJ451756 K. Sato unpublished cDNA li... 80 9e-014
gb|BJ459252.1|BJ459252 BJ459252 K. Sato unpublished cDNA li... 80 9e-014
gb|CA012187.1|CA012187 HT04K16r HT Hordeum vulgare subsp. v... 80 9e-014
gb|BF255193.2|BF255193 HVSMEf0006D08f Hordeum vulgare seedl... 78 4e-013
gb|CA009849.1|CA009849 HT12N24u HT Hordeum vulgare subsp. v... 78 4e-013
gb|CA012210.1|CA012210 HT04M11r HT Hordeum vulgare subsp. v... 78 4e-013
gb|CA018162.1|CA018162 HV07L16r HV Hordeum vulgare subsp. v... 78 4e-013
gb|BI949350.1|BI949350 HVSMEl0013H11f Hordeum vulgare spike... 76 1e-012
gb|AV910172.1|AV910172 AV910172 K. Sato unpublished cDNA li... 74 6e-012
gb|BE421938.1|BE421938 HWM016cG.08r ITEC HWM Barley Leaf Li... 72 2e-011
gb|BJ449474.1|BJ449474 BJ449474 K. Sato unpublished cDNA li... 72 2e-011
gb|BJ451072.1|BJ451072 BJ451072 K. Sato unpublished cDNA li... 72 2e-011
gb|BJ458576.1|BJ458576 BJ458576 K. Sato unpublished cDNA li... 72 2e-011
gb|BQ660441.1|BQ660441 HI02J08u HI Hordeum vulgare subsp. v... 72 2e-011
gb|CB877320.1|CB877320 HP04G13T HP Hordeum vulgare subsp. v... 72 2e-011
gb|CA017694.1|CA017694 HV05P04r HV Hordeum vulgare subsp. v... 70 9e-011
gb|BE454845.1|BE454845 HVSMEh0095E05f Hordeum vulgare 5-45 ... 68 3e-010
gb|BG414755.1|BG414755 HVSMEk0003J19f Hordeum vulgare testa... 68 3e-010
gb|BG417971.1|BG417971 HVSMEk0020F20f Hordeum vulgare testa... 68 3e-010
gb|BG418257.2|BG418257 HVSMEk0022B19f Hordeum vulgare testa... 68 3e-010
gb|CB879385.1|CB879385 HP02A05w HP Hordeum vulgare subsp. v... 68 3e-010
gb|BF624009.3|BF624009 HVSMEa0008J10f Hordeum vulgare seedl... 66 1e-009
gb|BM097251.1|BM097251 EBpi07_SQ002_O02_R pistil, 12 DPA, n... 66 1e-009
gb|BJ459434.1|BJ459434 BJ459434 K. Sato unpublished cDNA li... 66 1e-009
gb|BG365536.1|BG365536 HVSMEi0003B22f Hordeum vulgare 20 DA... 64 5e-009
gb|BI949025.1|BI949025 HVSMEl0012B07f Hordeum vulgare spike... 64 5e-009
gb|BG415203.1|BG415203 HVSMEk0005I16f Hordeum vulgare testa... 64 5e-009
gb|BG417744.1|BG417744 HVSMEk0019F09f Hordeum vulgare testa... 64 5e-009
gb|BE454492.3|BE454492 HVSMEh0094A02f Hordeum vulgare 5-45 ... 64 5e-009
gb|BG369358.2|BG369358 HVSMEi0024B14f Hordeum vulgare 20 DA... 64 5e-009
gb|BE602375.2|BE602375 HVSMEh0098L01f Hordeum vulgare 5-45 ... 62 2e-008
gb|BG366443.1|BG366443 HVSMEi0007B04f Hordeum vulgare 20 DA... 62 2e-008
gb|BG366444.1|BG366444 HVSMEi0007B06f Hordeum vulgare 20 DA... 62 2e-008
gb|BG416746.1|BG416746 HVSMEk0014F08f Hordeum vulgare testa... 62 2e-008
gb|BE455238.3|BE455238 HVSMEh0096L08f Hordeum vulgare 5-45 ... 62 2e-008
gb|BE602672.2|BE602672 HVSMEh0101A21f Hordeum vulgare 5-45 ... 62 2e-008
gb|BG365634.2|BG365634 HVSMEi0003I02f Hordeum vulgare 20 DA... 62 2e-008
gb|BG366294.2|BG366294 HVSMEi0006J18f Hordeum vulgare 20 DA... 62 2e-008
gb|BG366386.2|BG366386 HVSMEi0006N24f Hordeum vulgare 20 DA... 62 2e-008
gb|BG368640.2|BG368640 HVSMEi0020A24f Hordeum vulgare 20 DA... 62 2e-008
gb|BG369588.2|BG369588 HVSMEi0025B12f Hordeum vulgare 20 DA... 62 2e-008
gb|BG414551.2|BG414551 HVSMEk0002N14f Hordeum vulgare testa... 62 2e-008
gb|BG365887.1|BG365887 HVSMEi0004K07f Hordeum vulgare 20 DA... 58 3e-007
gb|BG368439.1|BG368439 HVSMEi0018M10f Hordeum vulgare 20 DA... 58 3e-007
gb|BI947647.1|BI947647 HVSMEl0006E07f Hordeum vulgare spike... 58 3e-007
gb|CA010970.1|CA010970 HT07J12u HT Hordeum vulgare subsp. v... 58 3e-007
gb|BI951414.1|BI951414 HVSMEl0025N19f Hordeum vulgare spike... 56 1e-006
gb|BI952125.1|BI952125 HVSMEm0004L07f Hordeum vulgare green... 56 1e-006
gb|BE214283.1|BE214283 HV_CEb0003A01f Hordeum vulgare seedl... 56 1e-006
gb|BF065067.1|BF065067 HV_CEb0022N01f Hordeum vulgare seedl... 56 1e-006
gb|BF264615.1|BF264615 HV_CEa0009O11f Hordeum vulgare seedl... 56 1e-006
gb|BF264498.2|BF264498 HV_CEa0009J09f Hordeum vulgare seedl... 56 1e-006
gb|BE214483.2|BE214483 HV_CEb0003J11f Hordeum vulgare seedl... 56 1e-006
gb|BF065694.2|BF065694 HV_CEb0013H08f Hordeum vulgare seedl... 56 1e-006
gb|BF259671.3|BF259671 HVSMEf0019P07f Hordeum vulgare seedl... 56 1e-006
gb|BF065825.3|BF065825 HV_CEb0014B14f Hordeum vulgare seedl... 56 1e-006
gb|AV908859.1|AV908859 AV908859 K. Sato unpublished cDNA li... 56 1e-006
gb|AV908961.1|AV908961 AV908961 K. Sato unpublished cDNA li... 56 1e-006
gb|AV909683.1|AV909683 AV909683 K. Sato unpublished cDNA li... 56 1e-006
gb|AV910846.1|AV910846 AV910846 K. Sato unpublished cDNA li... 56 1e-006
gb|AV911582.1|AV911582 AV911582 K. Sato unpublished cDNA li... 56 1e-006
gb|AV928645.1|AV928645 AV928645 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ449314.1|BJ449314 BJ449314 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ456780.1|BJ456780 BJ456780 K. Sato unpublished cDNA li... 56 1e-006
gb|BI780166.2|BI780166 EBma08_SQ001_J11_R maternal, 28 DPA,... 56 1e-006
gb|BJ544300.1|BJ544300 BJ544300 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ544721.1|BJ544721 BJ544721 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ544774.1|BJ544774 BJ544774 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ544954.1|BJ544954 BJ544954 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ545740.1|BJ545740 BJ545740 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546018.1|BJ546018 BJ546018 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546165.1|BJ546165 BJ546165 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546197.1|BJ546197 BJ546197 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546246.1|BJ546246 BJ546246 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546257.1|BJ546257 BJ546257 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546437.1|BJ546437 BJ546437 K. Sato unpublished cDNA li... 56 1e-006
gb|BJ546657.1|BJ546657 BJ546657 K. Sato unpublished cDNA li... 56 1e-006
emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase... 56 1e-006
emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a 56 1e-006
emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b 56 1e-006
gb|BE454981.1|BE454981 HVSMEh0095L21f Hordeum vulgare 5-45 ... 54 5e-006
gb|BE195290.2|BE195290 HVSMEh0088N04f Hordeum vulgare 5-45 ... 54 5e-006
gb|BG365326.1|BG365326 HVSMEi0002E22f Hordeum vulgare 20 DA... 54 5e-006
gb|BG366514.1|BG366514 HVSMEi0007F02f Hordeum vulgare 20 DA... 54 5e-006
gb|BE454366.3|BE454366 HVSMEh0093N17f Hordeum vulgare 5-45 ... 54 5e-006
gb|BG368219.2|BG368219 HVSMEi0016L15f Hordeum vulgare 20 DA... 54 5e-006
gb|BQ660384.1|BQ660384 HI02D16u HI Hordeum vulgare subsp. v... 54 5e-006
gb|BJ545180.1|BJ545180 BJ545180 K. Sato unpublished cDNA li... 54 5e-006
gb|BF064990.1|BF064990 HV_CEb0022F13f Hordeum vulgare seedl... 52 2e-005
gb|AV929266.1|AV929266 AV929266 K. Sato unpublished cDNA li... 52 2e-005
gb|CB877365.1|CB877365 HP04J20T HP Hordeum vulgare subsp. v... 52 2e-005
gb|BF066058.1|BF066058 HV_CEb0014L16f Hordeum vulgare seedl... 50 8e-005
gb|BQ757610.1|BQ757610 EBem10_SQ004_K15_R embryo, 2 Day ger... 50 8e-005
gb|CB877499.1|CB877499 HP05C16T HP Hordeum vulgare subsp. v... 50 8e-005
gb|BF624096.2|BF624096 HVSMEa0009G20f Hordeum vulgare seedl... 48 3e-004
gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedl... 48 3e-004
gb|BE215473.3|BE215473 HV_CEb0006O09f Hordeum vulgare seedl... 48 3e-004
gb|AV931077.1|AV931077 AV931077 K. Sato unpublished cDNA li... 48 3e-004
gb|BM441867.2|BM441867 EBed07_SQ001_M10_R endosperm, 28 DPA... 48 3e-004
gb|BM371530.2|BM371530 EBma08_SQ003_B11_R maternal, 28 DPA,... 48 3e-004
gb|BM371550.2|BM371550 EBma08_SQ003_C16_R maternal, 28 DPA,... 48 3e-004
gb|BM371924.2|BM371924 EBma08_SQ004_G15_R maternal, 28 DPA,... 48 3e-004
gb|CA014196.1|CA014196 HT10K16r HT Hordeum vulgare subsp. v... 48 3e-004
gb|CA014966.1|CA014966 HT12N24r HT Hordeum vulgare subsp. v... 48 3e-004
gb|CA015187.1|CA015187 HT13I21r HT Hordeum vulgare subsp. v... 48 3e-004
gb|BJ545495.1|BJ545495 BJ545495 K. Sato unpublished cDNA li... 48 3e-004
gb|AL499926.1|AL499926 AL499926 Hordeum vulgare Barke etiol... 46 0.001
gb|BG365987.1|BG365987 HVSMEi0005K09f Hordeum vulgare 20 DA... 46 0.001
gb|BE216024.1|BE216024 HV_CEb0009C12f Hordeum vulgare seedl... 46 0.001
gb|BG365564.2|BG365564 HVSMEi0003D14f Hordeum vulgare 20 DA... 46 0.001
gb|BG365745.2|BG365745 HVSMEi0004A12f Hordeum vulgare 20 DA... 46 0.001
gb|BE455567.3|BE455567 HVSMEg0017N15f Hordeum vulgare pre-a... 44 0.005
gb|BG366793.2|BG366793 HVSMEi0008F20f Hordeum vulgare 20 DA... 44 0.005
gb|CD663236.1|CD663236 UCRHV18_04dd01_b1 Drought-stressed D... 44 0.005
gb|BG310314.1|BG310314 HVSMEc0017J17f Hordeum vulgare seedl... 42 0.019
gb|BI955596.1|BI955596 HVSMEm0023L14f Hordeum vulgare green... 42 0.019
gb|BI956146.1|BI956146 HVSMEm0025M23f Hordeum vulgare green... 42 0.019
gb|BG366607.2|BG366607 HVSMEi0007J19f Hordeum vulgare 20 DA... 42 0.019
gb|BF262973.2|BF262973 HV_CEa0005H11f Hordeum vulgare seedl... 42 0.019
gb|BJ453540.1|BJ453540 BJ453540 K. Sato unpublished cDNA li... 42 0.019
gb|BJ461085.1|BJ461085 BJ461085 K. Sato unpublished cDNA li... 42 0.019
gb|BJ543978.1|BJ543978 BJ543978 K. Sato unpublished cDNA li... 42 0.019
gb|BJ544278.1|BJ544278 BJ544278 K. Sato unpublished cDNA li... 42 0.019
gb|BF266125.2|BF266125 HV_CEa0014D24f Hordeum vulgare seedl... 40 0.077
gb|BE602137.3|BE602137 HVSMEh0102K15f Hordeum vulgare 5-45 ... 40 0.077
gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedl... 40 0.077
gb|BI780179.2|BI780179 EBma08_SQ001_K01_R maternal, 28 DPA,... 40 0.077
gb|BQ758640.1|BQ758640 EBma07_SQ002_J07_R maternal, 21 DPA,... 40 0.077
gb|BQ758652.1|BQ758652 EBma07_SQ002_L09_R maternal, 21 DPA,... 40 0.077
gb|BE421554.1|BE421554 HWM011cA.03r ITEC HWM Barley Leaf Li... 38 0.30
gb|BG369819.1|BG369819 HVSMEi0026C13f Hordeum vulgare 20 DA... 38 0.30
gb|BI955638.1|BI955638 HVSMEm0023N21f Hordeum vulgare green... 38 0.30
gb|BE214577.2|BE214577 HV_CEb0003N19f Hordeum vulgare seedl... 38 0.30
gb|BE196066.3|BE196066 HVSMEh0091E09f Hordeum vulgare 5-45 ... 38 0.30
gb|BE559387.2|BE559387 HV_CEb0024H02f Hordeum vulgare seedl... 38 0.30
gb|BM376427.1|BM376427 EBem05_SQ002_D05_R embryo, 14 DPA, n... 38 0.30
gb|BJ471412.1|BJ471412 BJ471412 K. Sato unpublished cDNA li... 38 0.30
gb|BJ544555.1|BJ544555 BJ544555 K. Sato unpublished cDNA li... 38 0.30
gb|BJ544690.1|BJ544690 BJ544690 K. Sato unpublished cDNA li... 38 0.30
gb|CB878161.1|CB878161 HP07J01T HP Hordeum vulgare subsp. v... 38 0.30
gb|CD662737.1|CD662737 UCRHV18_02dh04_b1 Drought-stressed D... 38 0.30
>gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019P18f, mRNA sequence
Length = 713
Score = 343 bits (173), Expect = 4e-093
Identities = 388/459 (84%), Gaps = 3/459 (0%)
Strand = Plus / Minus
Query: 112 ggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaagacatcgcagtag 171
||||||||| |||||| ||||| ||||| | |||||||| || || || |||||||||
Sbjct: 488 ggcctctggttgtcgcagtcgaggttgcttcagtagccgacgccgagtacgtcgcagtag 429
Query: 172 cgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccgcactcgatc 231
|||||||||||||| || |||||| ||||||||||| ||| ||||||| || | |
Sbjct: 428 cgcttgtagaagccgatgcggtcgaccacccgggggtcatgcccacgcccgcattccagc 369
Query: 232 ccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccggccggccgccctg 291
|| |||||||||||||||||||||||||||||||| ||| | |||||||||||| ||
Sbjct: 368 ccgccgttgatgatgttggtgatcacgccgtacccgggcac---ccggccggccgcgttg 312
Query: 292 tccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcc 351
||||| ||||| ||||||||| |||||| |||||| ||||| ||||||||||||| ||
Sbjct: 311 tccgcggccgtcggcgtccaccgccccgcgatcaccgcgtgcgacgacggcttgttcgcc 252
Query: 352 cgcgcgttcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacg 411
||| | ||||||||||||||||||| |||||||| || | ||| |||||||| || ||
Sbjct: 251 tgcggggtcatccagaaccacagcgccgtcttgaacgacagcaccgggtccgtggccacc 192
Query: 412 aggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtag 471
|||||||||||| | || ||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 191 aggtccgggttgctcagcaggtcgacgccgagagcgcgccccgccgggccgtagttgtag 132
Query: 472 ttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccac 531
|||||||||| ||| ||||||||||||||| |||| | |||| |||||||||||||||
Sbjct: 131 ttgaaggagagctgcatggggccgcggccgtagtatcgcctgcccggcgcgcacggccac 72
Query: 532 tgcggccgcggctcgcagtagtccgacggcgggttgcgc 570
| ||||| ||||||||||||||| |||||||||| ||||
Sbjct: 71 tccggcctcggctcgcagtagtctgacggcgggtcgcgc 33
>gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18g16 5', mRNA sequence
Length = 507
Score = 208 bits (105), Expect = 1e-052
Identities = 320/391 (81%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 489 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 430
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 429 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 370
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 369 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 313
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 312 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 253
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 252 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 193
Query: 440 cgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggc 499
|||| || ||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct: 192 cgatcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggc 133
Query: 500 cgaagtacttcttgccgggcgcgcacggcca 530
| |||||| |||||||||||||||||||||
Sbjct: 132 catagtactgcttgccgggcgcgcacggcca 102
>gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18h03 5', mRNA sequence
Length = 511
Score = 208 bits (105), Expect = 1e-052
Identities = 320/391 (81%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 488 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 429
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 428 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 369
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 368 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 312
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 311 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 252
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 251 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 192
Query: 440 cgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggc 499
|||| || ||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct: 191 cgatcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggc 132
Query: 500 cgaagtacttcttgccgggcgcgcacggcca 530
| |||||| |||||||||||||||||||||
Sbjct: 131 catagtactgcttgccgggcgcgcacggcca 101
>gb|CA022080.1|CA022080 HZ42B20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42B20
5-PRIME, mRNA sequence
Length = 598
Score = 208 bits (105), Expect = 1e-052
Identities = 320/391 (81%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 555 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 496
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 495 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 436
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 435 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 379
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 378 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 319
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 318 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 259
Query: 440 cgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggc 499
|||| || ||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct: 258 cgatcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggc 199
Query: 500 cgaagtacttcttgccgggcgcgcacggcca 530
| |||||| |||||||||||||||||||||
Sbjct: 198 catagtactgcttgccgggcgcgcacggcca 168
>gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18g16 3', mRNA sequence
Length = 650
Score = 180 bits (91), Expect = 3e-044
Identities = 306/377 (81%), Gaps = 3/377 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 277 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 336
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 337 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 396
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 397 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 453
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 454 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 513
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 514 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 573
Query: 440 cgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggc 499
|||| || ||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct: 574 cgatcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggc 633
Query: 500 cgaagtacttcttgccg 516
| |||||| |||||||
Sbjct: 634 catagtactgcttgccg 650
>gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002L21f, mRNA sequence
Length = 839
Score = 176 bits (89), Expect = 5e-043
Identities = 155/177 (87%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||||||||| | | ||| ||||| ||||||||||
Sbjct: 558 tcatccagaaccacaacgccgtcttgaaggacacggtcgcgtcagtcgccacgaggtccg 499
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaagg 478
|||||||||| ||||| |||||||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 498 ggttgttgagcaggtcggcgccgatggcccgccctgccggcccgtagttgtagttgtggg 439
Query: 479 agatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 438 agatctggatgggcccgcgcccgaagtacttcttgcccggcgcgcacggccactgcg 382
Score = 63.9 bits (32), Expect = 5e-009
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 231 cccaccgttgatgatgttggtgatcacgccgtaccc 266
||||||||||||||||||||||||||| ||||||||
Sbjct: 684 cccaccgttgatgatgttggtgatcaccccgtaccc 649
>gb|BM372933.2|BM372933 EBma04_SQ002_H02_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H02 5', mRNA sequence
Length = 353
Score = 174 bits (88), Expect = 2e-042
Identities = 214/256 (83%)
Strand = Plus / Minus
Query: 275 cccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggc 334
|||| |||||||| |||||| ||||| ||| ||||| ||||||||||||| ||||||
Sbjct: 323 cccgtccggccgcgctgtccctggccgtcggcctccacaaccccgtgatcacgtcgtggc 264
Query: 335 acgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatca 394
|||||||||||||| | ||| ||||||||||||| | ||| |||||||| | | |
Sbjct: 263 acgacggcttgttggactgcgtcgtcatccagaaccaaatcgccgtcttgaacgccaccg 204
Query: 395 cggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccg 454
||||||| ||| || |||||||||||||| || |||||||| ||||| || |||||||
Sbjct: 203 tcgggtccgacgccaccaggtccgggttgttcagcaggtccaccccgatcgcccgccccg 144
Query: 455 ccgggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgc 514
|||| ||||||||||||||| || || |||||||||||||||||| |||||| |||||
Sbjct: 143 ccggtccgtagttgtagttgtgggtgagctggatggggccgcggccatagtactgcttgc 84
Query: 515 cgggcgcgcacggcca 530
||||||||||||||||
Sbjct: 83 cgggcgcgcacggcca 68
>gb|CA019539.1|CA019539 HV12E21r HV Hordeum vulgare subsp. vulgare cDNA clone HV12E21
5-PRIME, mRNA sequence
Length = 332
Score = 170 bits (86), Expect = 3e-041
Identities = 152/174 (87%)
Strand = Plus / Minus
Query: 397 gggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgcc 456
|||||||| || || |||||||||||| | || ||||| ||||||| || |||||||||
Sbjct: 326 gggtccgtggccaccaggtccgggttgctcagcaggtcgacgccgagagcgcgccccgcc 267
Query: 457 gggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccg 516
||||||||||||||||||||||||| ||| ||||||||||||||| |||| | ||||
Sbjct: 266 gggccgtagttgtagttgaaggagagctgcatggggccgcggccgtagtatcgcctgccc 207
Query: 517 ggcgcgcacggccactgcggccgcggctcgcagtagtccgacggcgggttgcgc 570
|||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||
Sbjct: 206 ggcgcgcacggccactccggcctcggctcgcagtagtctgacggcgggtcgcgc 153
>gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18h04 5', mRNA sequence
Length = 346
Score = 168 bits (85), Expect = 1e-040
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 298 gccgtgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcg 357
||||| ||| ||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct: 332 gccgtcggcctccacaaccccgtgatcacgtcgtggcacgacggcttgttggactgcgtc 273
Query: 358 ttcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtcc 417
||||||||||||| | ||| |||||||| | | | ||||||| ||| || ||||||
Sbjct: 272 gtcatccagaaccaaatcgccgtcttgaacgccaccgtcgggtccgacgccaccaggtcc 213
Query: 418 gggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaag 477
|||||||| || |||||||| ||||| || ||||||||||| ||||||||||||||| |
Sbjct: 212 gggttgttcagcaggtccaccccgatcgcccgccccgccggtccgtagttgtagttgtgg 153
Query: 478 gagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggcca 530
| || |||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 152 gtgagctggatggggccgcggccatagtactgcttgccgggcgcgcacggcca 100
>gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099N16f, mRNA sequence
Length = 730
Score = 165 bits (83), Expect = 2e-039
Identities = 298/369 (80%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 165 gcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccgca 224
||||||||||| ||||||||| |||||||||| || ||| ||||| ||| |||||
Sbjct: 492 gcagtagcgctggtagaagccgatccggtcggcaacacggctgtccgcccccctgccgca 433
Query: 225 ctcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccggccggc 284
||||| ||| |||||||||||||||||||| ||||| || || ||| | | | | ||
Sbjct: 432 ctcgagcccgccgttgatgatgttggtgatgacgccatagccgggcaccctct---ccgc 376
Query: 285 cgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgacggctt 344
||| |||| || ||||| |||||||| || ||||||||||||||||| | ||||||||
Sbjct: 375 cgcgttgtctgcggccgtcggcgtccattggcccgtgatcacggcgtgagaggacggctt 316
Query: 345 gttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatcacggggtccgt 404
|||| || ||| ||||||||||||| || || ||||||||||| | || |||||
Sbjct: 315 gttggcctgcggcgtcatccagaaccatagtgccgtcttgaaggacacggtggcatccgt 256
Query: 405 cgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgta 464
|| || ||||||||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 255 ggccaccaggtccgggttgttgagcaggtccacgccgatggcgcgcccggcagggccgta 196
Query: 465 gttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgca 524
||||||||| | |||| | |||||||||||||||| |||| | | |||| || ||||
Sbjct: 195 gttgtagttccatgagagcatgatggggccgcggccgtagtattgcctgccttgcacgca 136
Query: 525 cggccactg 533
|||||||||
Sbjct: 135 cggccactg 127
>gb|CA026694.1|CA026694 HZ56K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56K16
5-PRIME, mRNA sequence
Length = 363
Score = 157 bits (79), Expect = 5e-037
Identities = 231/281 (82%), Gaps = 3/281 (1%)
Strand = Plus / Minus
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
||||| |||||||| || ||||||| |||||||||||||||||| || || | |||
Sbjct: 293 ccgcattcgatcccgccattgatgacgttggtgatcacgccgtatccgggtac---ccgt 237
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| |||||| ||||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 236 ccggccgcgctgtccctggccgtcggcctccacaaccccgtgatcacgtcgtggcacgac 177
Query: 340 ggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatcacgggg 399
||||||||| | ||| ||||||||||||| | ||| |||||||| | | | |||
Sbjct: 176 ggcttgttggactgcgtcgtcatccagaaccaaatcgccgtcttgaacgccaccgtcggg 117
Query: 400 tccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccggg 459
|||| ||| || |||||||||||||| || |||||||| ||||| || |||||||||||
Sbjct: 116 tccgacgccaccaggtccgggttgttcagcaggtccaccccgatcgcccgccccgccggt 57
Query: 460 ccgtagttgtagttgaaggagatctggatggggccgcggcc 500
||||||||||||||| || || ||||||||||||||||||
Sbjct: 56 ccgtagttgtagttgtgggtgagctggatggggccgcggcc 16
>gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i19 5', mRNA sequence
Length = 583
Score = 153 bits (77), Expect = 7e-036
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 336 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 277
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 276 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 217
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 216 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 160
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 159 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 100
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 99 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 40
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 39 cgatcgcccgccccgccggtccgtagttgtagttg 5
>gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6f19 3', mRNA sequence
Length = 615
Score = 153 bits (77), Expect = 7e-036
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 281 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 340
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 341 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 400
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 401 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 457
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 458 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 517
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 518 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 577
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 578 cgatcgcccgccccgccggtccgtagttgtagttg 612
>gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6i19 3', mRNA sequence
Length = 620
Score = 153 bits (77), Expect = 7e-036
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 276 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 335
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 336 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 395
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 396 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 452
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 453 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 512
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 513 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 572
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 573 cgatcgcccgccccgccggtccgtagttgtagttg 607
>gb|BJ469713.1|BJ469713 BJ469713 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37c14 5', mRNA sequence
Length = 523
Score = 153 bits (77), Expect = 7e-036
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 336 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 277
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 276 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 217
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 216 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 160
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 159 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 100
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 99 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 40
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 39 cgatcgcccgccccgccggtccgtagttgtagttg 5
>gb|BJ476805.1|BJ476805 BJ476805 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37c14 3', mRNA sequence
Length = 589
Score = 153 bits (77), Expect = 7e-036
Identities = 271/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 245 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 304
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 305 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 364
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 365 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 421
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 422 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 481
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 482 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 541
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 542 cgatcgcccgccccgccggtccgtagttgtagttg 576
>gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC003.D02, mRNA sequence
Length = 489
Score = 147 bits (74), Expect = 5e-034
Identities = 175/209 (83%)
Strand = Plus / Minus
Query: 322 atcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtc 381
|||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |||
Sbjct: 382 atcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccgtc 323
Query: 382 ttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccg 441
||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |||
Sbjct: 322 ttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccccg 263
Query: 442 atggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggccg 501
|| || ||||||||||| ||||||||||||||| || || ||||||||||||||||||
Sbjct: 262 atcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggcca 203
Query: 502 aagtacttcttgccgggcgcgcacggcca 530
|||||| |||||||| ||||||||||||
Sbjct: 202 tagtactgcttgccggncgcgcacggcca 174
>gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012P08f, mRNA sequence
Length = 710
Score = 147 bits (74), Expect = 5e-034
Identities = 107/118 (90%)
Strand = Plus / Minus
Query: 417 cgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaa 476
|||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||
Sbjct: 710 cgggttgttgagcaggtcggcgccgatggcccgccctgccggcccgtagttgtagttgtg 651
Query: 477 ggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 650 ggagatctggatgggcccgcgcccgaagtacttcttgcccggcgcgcacggccactgc 593
>gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E17f, mRNA sequence
Length = 815
Score = 147 bits (74), Expect = 5e-034
Identities = 170/202 (84%)
Strand = Plus / Minus
Query: 329 cgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaagg 388
|||||||||||||||||||| | ||| ||||||||||||| | ||| |||||||| |
Sbjct: 734 cgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccgtcttgaacg 675
Query: 389 atatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctc 448
| | ||||||| ||| || |||||||||||||| || |||||||| ||||| || |
Sbjct: 674 ccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccactccgatcgccc 615
Query: 449 gccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtact 508
|||||||||| ||||||||||||||| || || |||||||||||||||||| ||||||
Sbjct: 614 gccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggccatagtact 555
Query: 509 tcttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 554 gcttgccgggcgcgcacggcca 533
>gb|BI947731.1|BI947731 HVSMEl0006K11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006K11f, mRNA sequence
Length = 1028
Score = 145 bits (73), Expect = 2e-033
Identities = 151/177 (85%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||| ||||| | | ||||||||| ||||||||||
Sbjct: 305 tcatccagaaccacaacgccgtcttaaaggacacggtcgcgtccgtcgccacgaggtccg 246
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaagg 478
|||||||||| |||| |||||||||| ||||| ||||| | ||||||||||||| ||
Sbjct: 245 ggttgttgagcaggtaggcgccgatggcccgccctgccggccagtagttgtagttgtggg 186
Query: 479 agatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
||||||||||||| ||||| || |||||||||||||| |||||||||||||| ||||
Sbjct: 185 agatctggatgggcccgcgccctaagtacttcttgcccggcgcgcacggccagtgcg 129
>gb|CD663592.1|CD663592 UCRHV18_06aa04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06aa04, mRNA sequence
Length = 572
Score = 145 bits (73), Expect = 2e-033
Identities = 270/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || |||||||||||||| || || |||||||||| |
Sbjct: 238 tcccgtagccgatgccgaagatgtcacagtagcgcttgtaaaacccgatccggtcggcca 297
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 298 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 357
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 358 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 414
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 415 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 474
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 475 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 534
Query: 440 cgatggctcgccccgccgggccgtagttgtagttg 474
|||| || ||||||||||| |||||||||||||||
Sbjct: 535 cgatcgcccgccccgccggtccgtagttgtagttg 569
>gb|AL499683.1|AL499683 AL499683 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK01K20r 3', mRNA sequence
Length = 652
Score = 139 bits (70), Expect = 1e-031
Identities = 118/134 (88%)
Strand = Plus / Minus
Query: 397 gggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgcc 456
||||||| ||| || |||||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 600 gggtccgacgccaccaggtccgggttgttcagcaggtccaccccgatcgcccgccccgcc 541
Query: 457 gggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccg 516
|| ||||||||||||||| || || |||||||||||||||||| |||||| |||||||
Sbjct: 540 ggtccgtagttgtagttgtgggtgagctggatggggccgcggccatagtactgcttgccg 481
Query: 517 ggcgcgcacggcca 530
||||||||||||||
Sbjct: 480 ggcgcgcacggcca 467
>gb|BI951167.1|BI951167 HVSMEl0024N04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024N04f, mRNA sequence
Length = 841
Score = 139 bits (70), Expect = 1e-031
Identities = 118/134 (88%)
Strand = Plus / Minus
Query: 397 gggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgcc 456
||||||| ||| || |||||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 203 gggtccgacgccaccaggtccgggttgttcagcaggtccaccccgatcgcccgccccgcc 144
Query: 457 gggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccg 516
|| ||||||||||||||| || || |||||||||||||||||| |||||| |||||||
Sbjct: 143 ggtccgtagttgtagttgtgggtgagctggatggggccgcggccatagtactgcttgccg 84
Query: 517 ggcgcgcacggcca 530
||||||||||||||
Sbjct: 83 ggcgcgcacggcca 70
>gb|BE195244.3|BE195244 HVSMEh0088K24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088K24f, mRNA sequence
Length = 597
Score = 139 bits (70), Expect = 1e-031
Identities = 190/230 (82%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
|||||||| || ||||||||||||||||| | |||||||||||| || ||| |||||
Sbjct: 242 ggcgtccattggcccgtgatcacggcgtgagaggacggcttgttggcctgcggcgtcatc 183
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| || || ||| ||||||| | || ||||| || || ||||||||||||
Sbjct: 182 cagaaccatagtgccgtcctgaaggacacggtggcatccgtggccaccaggtccgggttg 123
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||||||||||||||| ||||| || ||||||||||||||||| | |||| |
Sbjct: 122 ttgagcaggtccacgccgatggcgcgcccggcagggccgtagttgtagttccatgagagc 63
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactg 533
|||||||||||||||| |||||| | |||| || |||||||||||||
Sbjct: 62 atgatggggccgcggccgtagtactgcctgccttgcacgcacggccactg 13
>gb|CB877034.1|CB877034 HP03F07T HP Hordeum vulgare subsp. vulgare cDNA clone HP03F07
5-PRIME, mRNA sequence
Length = 349
Score = 139 bits (70), Expect = 1e-031
Identities = 264/328 (80%), Gaps = 3/328 (0%)
Strand = Plus / Minus
Query: 147 gccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggg 206
|||||||| ||||| || ||||||||||||||||| || |||||||||| ||| |
Sbjct: 349 gccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggccaccttgtc 290
Query: 207 gtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|| | ||| | ||||| |||||||| || ||||||| |||||||||||||||||| ||
Sbjct: 289 gttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgccgtatcc 230
Query: 267 tggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcac 326
|| | ||| |||||||| |||||| ||||| ||| ||||| ||||||||||||
Sbjct: 229 gggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccgtgatcac 173
Query: 327 ggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaa 386
| |||||||||||||||||||| | ||| ||||||||||||| | ||| ||||||||
Sbjct: 172 gtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccgtcttgaa 113
Query: 387 ggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggc 446
| | | ||||||| ||| || |||||||||||||| || |||||||| ||||| ||
Sbjct: 112 cgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccccgatcgc 53
Query: 447 tcgccccgccgggccgtagttgtagttg 474
||||||||||| |||||||||||||||
Sbjct: 52 ccgccccgccggtccgtagttgtagttg 25
>gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.A09, mRNA sequence
Length = 486
Score = 135 bits (68), Expect = 2e-030
Identities = 262/326 (80%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 146 agccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtgacccggg 205
||||||||| ||||| || ||||||||||||||||| || |||||||||| ||| |
Sbjct: 323 agccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggccaccttgt 264
Query: 206 ggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtacc 265
|| | ||| | ||||| |||||||| || ||||||| |||||||||||||||||| |
Sbjct: 263 cgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgccgtatc 204
Query: 266 ctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatca 325
| || | ||| |||||||| |||||| ||||| ||| ||||| |||||||||||
Sbjct: 203 cgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccgtgatca 147
Query: 326 cggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttga 385
|| |||||||||||||||||||| | ||| ||||||||||||| | ||| |||||||
Sbjct: 146 cgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccgtcttga 87
Query: 386 aggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatgg 445
| | | | ||||||| ||| || |||||||||||||| || |||||||| ||||| |
Sbjct: 86 acgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccccgatcg 27
Query: 446 ctcgccccgccgggccgtagttgtag 471
| ||||||||||| ||||||||||||
Sbjct: 26 cccgccccgccggtccgtagttgtag 1
>gb|CB879697.1|CB879697 HP03F07w HP Hordeum vulgare subsp. vulgare cDNA clone HP03F07
3-PRIME, mRNA sequence
Length = 594
Score = 131 bits (66), Expect = 3e-029
Identities = 260/324 (80%), Gaps = 3/324 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 274 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 333
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 334 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 393
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 394 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 450
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 451 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 510
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 511 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 570
Query: 440 cgatggctcgccccgccgggccgt 463
|||| || ||||||||||| ||||
Sbjct: 571 cgatcgcccgccccgccggtccgt 594
>gb|BI947511.1|BI947511 HVSMEl0005L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005L16f, mRNA sequence
Length = 505
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 259 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 318
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcactcgagcccaccgttgatgatgttggtgatcacgccgtaccc 363
Score = 38.2 bits (19), Expect = 0.30
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaagga 389
||||||| ||||||| ||| |||||||||||
Sbjct: 453 tcatccaaaaccacaacgccgtcttgaagga 483
>gb|BI948372.1|BI948372 HVSMEl0009E13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0009E13f, mRNA sequence
Length = 617
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Minus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 336 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 277
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcactcgagcccaccgttgatgatgttggtgatcacgccgtaccc 232
Score = 117 bits (59), Expect = 4e-025
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||||||||| | | ||||||||| ||||||||||
Sbjct: 142 tcatccagaaccacaacgccgtcttgaaggacacggtcgcgtccgtcgccacgaggtccg 83
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaagg 478
|||||||||| ||||| ||| |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 82 ggttgttgagcaggtcggcgcagatggcccgccctgccggcccgtagttgtagttgtggg 23
Query: 479 agatctggatggggccgcg 497
||||||||||||| |||||
Sbjct: 22 agatctggatgggcccgcg 4
>gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25c19 5', mRNA sequence
Length = 540
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Minus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 313 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 254
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcactcgagcccaccgttgatgatgttggtgatcacgccgtaccc 209
Score = 103 bits (52), Expect = 6e-021
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||||||||| | | ||||||||| ||||||||||
Sbjct: 119 tcatccagaaccacaacgccgtcttgaaggacacggtcgcgtccgtcgccacgaggtccg 60
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
|||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||
Sbjct: 59 ggttgttgagcaggtcggcgccgatggcccgccctgccggcccgtagttgtagttg 4
>gb|BJ459432.1|BJ459432 BJ459432 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25c19 3', mRNA sequence
Length = 534
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 222 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 281
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcactcgagcccaccgttgatgatgttggtgatcacgccgtaccc 326
Score = 103 bits (52), Expect = 6e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||||||||| | | ||||||||| ||||||||||
Sbjct: 416 tcatccagaaccacaacgccgtcttgaaggacacggtcgcgtccgtcgccacgaggtccg 475
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
|||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||
Sbjct: 476 ggttgttgagcaggtcggcgccgatggcccgccctgccggcccgtagttgtagttg 531
>gb|CA022259.1|CA022259 HZ42J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J20
5-PRIME, mRNA sequence
Length = 507
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 227 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 286
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcactcgagcccaccgttgatgatgttggtgatcacgccgtaccc 331
Score = 69.9 bits (35), Expect = 9e-011
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||| ||| ||||||||||| | | ||||||||| ||||||||||
Sbjct: 421 tcatccagaaccacaacgccgtcttgaaggacacggtcgcgtccgtcgccacgaggtccg 480
Query: 419 ggttgttgaggaggtccacgccgatgg 445
|||||||||| ||||| |||||||||
Sbjct: 481 ggttgttgagcaggtcggcgccgatgg 507
>gb|BM444668.1|BM444668 EBem09_SQ006_C06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_C06 5', mRNA sequence
Length = 174
Score = 121 bits (61), Expect = 3e-026
Identities = 130/153 (84%)
Strand = Plus / Minus
Query: 107 tgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaagacatcgc 166
|||| ||||||||| || ||| ||||| ||||| |||||||||| || || ||| ||||
Sbjct: 153 tgaacggcctctggttgttgcagtcgaggttgcttccgtagccgacgccgaggacgtcgc 94
Query: 167 agtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccgcact 226
||||||||||||||||||| || |||||| |||||||||||| ||| |||||||||
Sbjct: 93 agtagcgcttgtagaagccgatgcggtcgaccacccgggggtcctgcccacgcccgcact 34
Query: 227 cgatcccaccgttgatgatgttggtgatcacgc 259
| | ||| |||||||||||||||||||||||||
Sbjct: 33 ccagcccgccgttgatgatgttggtgatcacgc 1
>gb|BM372862.1|BM372862 EBma04_SQ002_D08_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_D08 5', mRNA sequence
Length = 424
Score = 119 bits (60), Expect = 1e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 182 atcgcagtagcgcttgtagaacccgatccggtcggatacgcgggcgtcctgcccgcgccc 123
Query: 222 gcactcgatcccaccgttgatgatgttggtgatcacgccg 261
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 122 gcactcgagcccaccgttgatgatgttggtgatcacgccg 83
>gb|BQ662085.1|BQ662085 HR01H21u HR Hordeum vulgare subsp. vulgare cDNA clone HR01H21
3-PRIME, mRNA sequence
Length = 373
Score = 119 bits (60), Expect = 1e-025
Identities = 135/160 (84%)
Strand = Plus / Plus
Query: 107 tgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaagacatcgc 166
|||| ||||||||| || ||| ||||| ||||| |||||||||| || || ||| ||||
Sbjct: 206 tgaacggcctctggttgttgcagtcgaggttgcttccgtagccgacgccgaggacgtcgc 265
Query: 167 agtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccgcact 226
||||||||||||||||||| || |||||| |||||||||||| ||| |||||||||
Sbjct: 266 agtagcgcttgtagaagccgatgcggtcgaccacccgggggtcctgcccacgcccgcact 325
Query: 227 cgatcccaccgttgatgatgttggtgatcacgccgtaccc 266
| | ||| |||||||||||||||| |||||||||| ||||
Sbjct: 326 ccaacccgccgttgatgatgttggagatcacgccggaccc 365
>gb|CB876675.1|CB876675 HP02A05T HP Hordeum vulgare subsp. vulgare cDNA clone HP02A05
5-PRIME, mRNA sequence
Length = 639
Score = 113 bits (57), Expect = 6e-024
Identities = 254/319 (79%), Gaps = 3/319 (0%)
Strand = Plus / Minus
Query: 219 cccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccg 278
||||||||| ||||||| | ||||||||||||||| ||||||||| | ||| | |||
Sbjct: 582 cccgcactccctcccaccatagatgatgttggtgatgacgccgtacgcaggcac---ccg 526
Query: 279 gccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacga 338
||||| || |||| || ||| ||||||||||| ||||||||||||||||| |||
Sbjct: 525 accggcggcattgtcggcgcccgacggcgtccactgacccgtgatcacggcgtgcgacgc 466
Query: 339 cggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatcacggg 398
||||||||| || | || ||| ||| ||||||| ||| | |||||| || | | |
Sbjct: 465 cggcttgttcgcctgagccgtcacccaaaaccacaacgccgccttgaacgagaccgtcgc 406
Query: 399 gtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgg 458
||| || || || ||||| ||||| ||||| |||||||| |||||||| ||||| ||| |
Sbjct: 405 gtcggtggccaccaggtcggggttattgagcaggtccaccccgatggcgcgccctgcctg 346
Query: 459 gccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccggg 518
||||||||||||||| || || ||| || || || |||||| |||| |||||||||||
Sbjct: 345 gccgtagttgtagttccagctgagctgcataggtccacggccgtagtatttcttgccggg 286
Query: 519 cgcgcacggccactgcggc 537
|||||||||||||| ||||
Sbjct: 285 cgcgcacggccactccggc 267
>gb|AL500402.1|AL500402 AL500402 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06H20r 3', mRNA sequence
Length = 693
Score = 111 bits (56), Expect = 3e-023
Identities = 105/120 (87%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 412 aggtccgggttgttg-aggaggtccacgccgatggctcgccccgccgggccgtagttgta 470
|||||||||||||| || || ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 584 aggtccgggttgtttcagcagttccaccccgatcgcccgccccgccggtccgtagttgta 525
Query: 471 gttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggcca 530
|||| || || |||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 524 gttgtgggtgagctggatggggccgcggccatagtactgcttgccgggcgcgcacggcca 465
>gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012F13f, mRNA sequence
Length = 705
Score = 111 bits (56), Expect = 3e-023
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| |||||||||| || | ||||| | ||||||||||||| |||||||
Sbjct: 704 ttgagcaggtcggcgccgatggcccggcatgccggccggtagttgtagttgtgggagatc 645
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 644 tggatgggcccgcgcccgaagtacttcttgcccggcgcgcacggccactgcg 593
>gb|BM368822.1|BM368822 EBem08_SQ004_L06_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_L06 5', mRNA sequence
Length = 353
Score = 109 bits (55), Expect = 1e-022
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 162 atcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgccc 221
||||||||||||||||||||| || |||||||||| || |||| |||| |||| ||||
Sbjct: 95 atcgcagtagcgcttgtagaacccgatccggtcggctacgcgggcgtcctgcccgcgccc 36
Query: 222 gcactcgatcccaccgttgatgatgttggtgatca 256
|||||||| ||||||||||||||||||||||||||
Sbjct: 35 gcactcgagcccaccgttgatgatgttggtgatca 1
>gb|CB858429.1|CB858429 HI06P17w HI Hordeum vulgare subsp. vulgare cDNA clone HI06P17
3-PRIME, mRNA sequence
Length = 487
Score = 107 bits (54), Expect = 4e-022
Identities = 242/304 (79%), Gaps = 3/304 (0%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || |||||||||||||| || || |||||||||| |
Sbjct: 181 tcccgtagccgatgccgaagatgtcacagtagcgcttgtaaaacccgatccggtcggcca 240
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 241 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 300
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 301 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 357
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 358 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 417
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgc 439
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||| |
Sbjct: 418 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtccaccc 477
Query: 440 cgat 443
||||
Sbjct: 478 cgat 481
>gb|CB879149.1|CB879149 HP11B19T HP Hordeum vulgare subsp. vulgare cDNA clone HP11B19
5-PRIME, mRNA sequence
Length = 518
Score = 107 bits (54), Expect = 4e-022
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 430 aggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatg 489
|||||||| ||||| || ||||||||||| ||||||||||||||| || || |||||||
Sbjct: 511 aggtccaccccgatcgcccgccccgccggtccgtagttgtagttgtgggtgagctggatg 452
Query: 490 gggccgcggccgaagtacttcttgccgggcgcgcacggcca 530
|| |||||||| |||||| |||||||||||||||||||||
Sbjct: 451 ggnccgcggccatagtactgcttgccgggcgcgcacggcca 411
>gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM023cB.11, mRNA sequence
Length = 1135
Score = 105 bits (53), Expect = 2e-021
Identities = 199/247 (80%), Gaps = 3/247 (1%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 392 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 333
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 332 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 273
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 272 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 216
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 215 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 156
Query: 380 tcttgaa 386
|||||||
Sbjct: 155 tcttgaa 149
>gb|BG415997.2|BG415997 HVSMEk0009F15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F15f, mRNA sequence
Length = 403
Score = 105 bits (53), Expect = 2e-021
Identities = 128/153 (83%)
Strand = Plus / Minus
Query: 108 gaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaagacatcgca 167
||||||||||||| || ||| ||||| ||| | |||||||| | || || || |||||
Sbjct: 194 gaagggcctctggttgtagcagtcgaggttgttgccgtagccaacgccgaggatgtcgca 135
Query: 168 gtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccgcactc 227
|||||||||||| || || |||||||||| ||| ||| |||| ||| |||||||||||
Sbjct: 134 gtagcgcttgtaaaacccgatccggtcggcgactcggctgtcctgcccatgcccgcactc 75
Query: 228 gatcccaccgttgatgatgttggtgatcacgcc 260
|||||| ||||||| ||||||||||||||||||
Sbjct: 74 gatcccgccgttgacgatgttggtgatcacgcc 42
>gb|AV935825.1|AV935825 AV935825 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6j13 3', mRNA sequence
Length = 550
Score = 105 bits (53), Expect = 2e-021
Identities = 199/247 (80%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 278 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 337
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 338 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 397
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 398 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 454
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 455 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 514
Query: 380 tcttgaa 386
|||||||
Sbjct: 515 tcttgaa 521
>gb|BQ659497.1|BQ659497 HE01J14u HE Hordeum vulgare subsp. vulgare cDNA clone HE01J14
3-PRIME, mRNA sequence
Length = 518
Score = 105 bits (53), Expect = 2e-021
Identities = 199/247 (80%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 261 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 320
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 321 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 380
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 381 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 437
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 438 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 497
Query: 380 tcttgaa 386
|||||||
Sbjct: 498 tcttgaa 504
>gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6j13 5', mRNA sequence
Length = 443
Score = 103 bits (52), Expect = 6e-021
Identities = 236/297 (79%), Gaps = 3/297 (1%)
Strand = Plus / Minus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 294 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 235
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 234 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 175
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || |||| |||||||| |||||| ||||| ||| ||||| | |||
Sbjct: 174 cgtatccggg---tacccgtccggccgcgctgtccctggccgtcggcctccacaacnccg 118
Query: 320 tgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctg 379
|||||||| |||||||||||||||||||| | ||| ||||||||||||| | ||| |
Sbjct: 117 tgatcacgtcgtggcacgacggcttgttggactgcgtcgtcatccagaaccaaatcgccg 58
Query: 380 tcttgaaggatatcacggggtccgtcgcgacgaggtccgggttgttgaggaggtcca 436
||||||| | | | ||||||| ||| || |||||||||||||| || |||||||
Sbjct: 57 tcttgaacgccaccgtcgggtccgacgccaccaggtccgggttgttcagcaggtcca 1
>gb|AV931076.1|AV931076 AV931076 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18h03 3', mRNA sequence
Length = 576
Score = 101 bits (51), Expect = 2e-020
Identities = 170/209 (81%), Gaps = 3/209 (1%)
Strand = Plus / Plus
Query: 140 tcccgtagccgatgcggaagacatcgcagtagcgcttgtagaagccaatccggtcggtga 199
||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
Sbjct: 275 tcccgtagccgatgccgaagatgtcacagtagcgcttgtagaacccgatccggtcggcca 334
Query: 200 cccgggggtccgtcccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgc 259
|| | || | ||| | ||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 335 ccttgtcgttctgccccttgccgcattcgatcccgccattgatgacgttggtgatcacgc 394
Query: 260 cgtaccctggcgcgccccggccggccgccctgtccgcagccgtgggcgtccactgccccg 319
|||| || || | ||| |||||||| |||||| ||||| ||| ||||| |||||
Sbjct: 395 cgtatccgggtac---ccgtccggccgcgctgtccctggccgtcggcctccacaaccccg 451
Query: 320 tgatcacggcgtggcacgacggcttgttg 348
|||||||| ||||||||||||||||||||
Sbjct: 452 tgatcacgtcgtggcacgacggcttgttg 480
>gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6f19 5', mRNA sequence
Length = 192
Score = 101 bits (51), Expect = 2e-020
Identities = 146/177 (82%), Gaps = 1/177 (0%)
Strand = Plus / Minus
Query: 299 ccgtgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgt 358
|||| ||| ||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct: 179 ccgtcggcctccacanccccgtgatcacgtcgtggcacgacggcttgttggactgcgtcg 120
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||| | ||| |||||||| | | | ||||||| ||| || |||||||
Sbjct: 119 tcatccagaaccaaatcgccgtcttgaacgccaccgtcgggtccgacgccaccaggtccg 60
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgg-gccgtagttgtagttg 474
||||||| || |||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct: 59 ggttgttcagcaggtccaccccgatcgcccgccccgccggtnccgtagttgtagttg 3
>gb|BQ757012.1|BQ757012 EBem10_SQ002_I05_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_I05 5', mRNA sequence
Length = 130
Score = 101 bits (51), Expect = 2e-020
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 448 cgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtac 507
||||||||||| ||||||||||||||| || || |||||||||||||||||| |||||
Sbjct: 123 cgccccgccggtccgtagttgtagttgtgggtgagctggatggggccgcggccatagtac 64
Query: 508 ttcttgccgggcgcgcacggcca 530
| |||||||||||||||||||||
Sbjct: 63 tgcttgccgggcgcgcacggcca 41
>gb|BG365157.2|BG365157 HVSMEi0001I15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001I15f, mRNA sequence
Length = 937
Score = 99.6 bits (50), Expect = 1e-019
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||| || || |||||||||| ||| ||| |||| ||| ||||||
Sbjct: 470 tcgcagtagcgcttgtaaaacccgatccggtcggcgactcggctgtcctgcccatgcccg 411
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgcc 260
||||||||||| ||||||| ||||||||||||||||||
Sbjct: 410 cactcgatcccgccgttgacgatgttggtgatcacgcc 373
Score = 77.8 bits (39), Expect = 4e-013
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 397 gggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgccccgcc 456
|||||||| || || |||||||||||| |||||||| || |||||||| || |||||
Sbjct: 239 gggtccgtggccaccaggtccgggttgcgcaggaggtcgaccccgatggcccggcccgca 180
Query: 457 gggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttgccg 516
|| ||||||||||||||| ||||| |||||| || || |||| | |||| |||| ||
Sbjct: 179 ggcccgtagttgtagttgtgggagagctggatcggcccacggcagtagtagctcttccct 120
Query: 517 ggcgcgcacggccactgcg 535
|| ||||||||||||||||
Sbjct: 119 ggggcgcacggccactgcg 101
Score = 42.1 bits (21), Expect = 0.019
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 308 tccactgccccgtgatcacggcgtggcacgacggctt 344
||||||| ||||||||||| || |||| |||||||||
Sbjct: 328 tccactggcccgtgatcacagcatggctcgacggctt 292
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,558
Number of Sequences: 312970
Number of extensions: 60558
Number of successful extensions: 16528
Number of sequences better than 0.5: 222
Number of HSP's better than 0.5 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15843
Number of HSP's gapped (non-prelim): 645
length of query: 570
length of database: 175,134,539
effective HSP length: 19
effective length of query: 551
effective length of database: 169,188,109
effective search space: 93222648059
effective search space used: 93222648059
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)