BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506696.1|AL506696 AL506696 Hordeum vulgare Barke devel... 509 e-143
gb|BF629454.2|BF629454 HVSMEb0012H12f Hordeum vulgare seedl... 476 e-133
gb|CB879021.1|CB879021 HP10K19T HP Hordeum vulgare subsp. v... 434 e-120
gb|AV922941.1|AV922941 AV922941 K. Sato unpublished cDNA li... 406 e-112
gb|AV924620.1|AV924620 AV924620 K. Sato unpublished cDNA li... 406 e-112
gb|BU990541.1|BU990541 HF25F18r HF Hordeum vulgare subsp. v... 406 e-112
gb|AV913801.1|AV913801 AV913801 K. Sato unpublished cDNA li... 375 e-102
gb|CA004210.1|CA004210 HS16O15r HS Hordeum vulgare subsp. v... 347 4e-094
gb|CA032535.1|CA032535 HX13F08r HX Hordeum vulgare subsp. v... 339 1e-091
gb|BU975068.1|BU975068 HB29P21r BC Hordeum vulgare subsp. v... 333 7e-090
gb|AV916829.1|AV916829 AV916829 K. Sato unpublished cDNA li... 325 2e-087
gb|BU975172.1|BU975172 HB30F01r BC Hordeum vulgare subsp. v... 287 3e-076
gb|BJ472477.1|BJ472477 BJ472477 K. Sato unpublished cDNA li... 266 1e-069
gb|BU998572.1|BU998572 HI11H17r HI Hordeum vulgare subsp. v... 252 2e-065
gb|BQ766883.1|BQ766883 EBro08_SQ007_K09_R root, 3 week, dro... 236 1e-060
gb|BM375790.2|BM375790 EBem06_SQ004_G19_R embryo, 21 DPA, n... 230 7e-059
gb|AV924629.1|AV924629 AV924629 K. Sato unpublished cDNA li... 222 2e-056
gb|BU972357.1|BU972357 HB21G20r BC Hordeum vulgare subsp. v... 220 7e-056
gb|BQ761130.1|BQ761130 EBro04_SQ004_D16_R root, 3 week, sal... 214 4e-054
gb|AV921413.1|AV921413 AV921413 K. Sato unpublished cDNA li... 212 2e-053
gb|AV929715.1|AV929715 AV929715 K. Sato unpublished cDNA li... 212 2e-053
gb|AW982502.2|AW982502 HVSMEg0003H02f Hordeum vulgare pre-a... 186 9e-046
gb|BI956261.1|BI956261 HVSMEn0001L13f Hordeum vulgare rachi... 184 4e-045
gb|CA003541.1|CA003541 HS14M23r HS Hordeum vulgare subsp. v... 139 2e-031
gb|AV922126.1|AV922126 AV922126 K. Sato unpublished cDNA li... 137 8e-031
gb|CB859750.1|CB859750 HI11H17w HI Hordeum vulgare subsp. v... 131 5e-029
gb|AL510121.1|AL510121 AL510121 Hordeum vulgare Barke devel... 117 7e-025
gb|AV927657.1|AV927657 AV927657 K. Sato unpublished cDNA li... 117 7e-025
gb|BQ464409.1|BQ464409 HF02D05r HF Hordeum vulgare subsp. v... 117 7e-025
gb|BQ766420.1|BQ766420 EBro08_SQ005_O20_R root, 3 week, dro... 117 7e-025
gb|BU984942.1|BU984942 HF05K03r HF Hordeum vulgare subsp. v... 117 7e-025
gb|BM097258.2|BM097258 EBpi07_SQ002_O10_R pistil, 12 DPA, n... 60 1e-007
gb|BM371239.2|BM371239 EBro04_SQ003_P02_R root, 3 week, sal... 46 0.002
gb|BU998194.1|BU998194 HI10E13r HI Hordeum vulgare subsp. v... 46 0.002
>gb|AL506696.1|AL506696 AL506696 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03P14T 5',
mRNA sequence
Length = 700
Score = 509 bits (257), Expect = e-143
Identities = 535/628 (85%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 69 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 128
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 129 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 188
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 189 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 248
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 249 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 308
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 309 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 368
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 369 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 428
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 429 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 488
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
||||||| || ||||||||||||||||| || ||||| ||| || || | |||||||
Sbjct: 489 ctgtgataataatttcttcaattgctggctataatcctgaagcagctttatcgatgtatg 548
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
|||| |||||||| || || ||||| || ||||||||||||||| ||||||||| ||
Sbjct: 549 gtgttacaaagaccgccctttttggccttacgaaggctcttgctactgagatgggcccaa 608
Query: 590 atactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctca 649
|||| ||||||||||||||||| ||||| |||| ||||||||| |||||| |||||||||
Sbjct: 609 atacccgtgttaactgtatagctcctgggtttgntcctacacgttttgctggtttcctca 668
Query: 650 cagaaaatgagaccattaggaaagagct 677
|| |||||||||||||| || |||||
Sbjct: 669 caactaatgagaccattagaaatgagct 696
>gb|BF629454.2|BF629454 HVSMEb0012H12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012H12f, mRNA sequence
Length = 870
Score = 476 bits (240), Expect = e-133
Identities = 495/580 (85%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 25 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 84
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 85 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 144
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 145 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 204
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 205 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 264
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 265 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 324
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 325 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 384
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 385 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 444
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
||||||| || ||||||||||||||||| || ||||| ||| || || | |||||||
Sbjct: 445 ctgtgataataatttcttcaattgctggctataatcctgaagcagctttatcgatgtatg 504
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
|||| |||||||| || || ||||| || ||||| ||||||||| ||||||||| ||
Sbjct: 505 gtgttacaaagaccgccctttttggccttacgaaagctcttgctactgagatgggcccaa 564
Query: 590 atactcgtgttaactgtatagcccctggttttgttcctac 629
|||| ||||||||||||||||| |||||||||||||||||
Sbjct: 565 atacccgtgttaactgtatagctcctggttttgttcctac 604
>gb|CB879021.1|CB879021 HP10K19T HP Hordeum vulgare subsp. vulgare cDNA clone HP10K19
5-PRIME, mRNA sequence
Length = 571
Score = 434 bits (219), Expect = e-120
Identities = 456/535 (85%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 23 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 82
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 83 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 142
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 143 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 202
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 203 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 262
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 263 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 322
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 323 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 382
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 383 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 442
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
||||||| || ||||||||||||||||| || ||||| ||| || || | |||||||
Sbjct: 443 ctgtgataataatttcttcaattgctggctataatcctgaagcagctttatcgatgtatg 502
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatggg 584
|||| |||||||| || || ||||| || ||||||||||||||| |||||||||
Sbjct: 503 gtgttacaaagaccgccctttttggccttacgaaggctcttgctactgagatggg 557
>gb|AV922941.1|AV922941 AV922941 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3a23 5', mRNA sequence
Length = 558
Score = 406 bits (205), Expect = e-112
Identities = 394/457 (86%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 77 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 136
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 137 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 196
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 197 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 256
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 257 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 316
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 317 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 376
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 377 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 436
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 437 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 496
Query: 470 ctgtgattattatttcttcaattgctggttacaatcc 506
||||||| || ||||||||||||||||| || |||||
Sbjct: 497 ctgtgataataatttcttcaattgctggctataatcc 533
>gb|AV924620.1|AV924620 AV924620 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16e19 5', mRNA sequence
Length = 575
Score = 406 bits (205), Expect = e-112
Identities = 394/457 (86%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 92 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 151
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 152 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 211
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 212 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 271
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 272 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 331
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 332 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 391
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 392 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 451
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 452 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 511
Query: 470 ctgtgattattatttcttcaattgctggttacaatcc 506
||||||| || ||||||||||||||||| || |||||
Sbjct: 512 ctgtgataataatttcttcaattgctggctataatcc 548
>gb|BU990541.1|BU990541 HF25F18r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F18
5-PRIME, mRNA sequence
Length = 552
Score = 406 bits (205), Expect = e-112
Identities = 394/457 (86%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 44 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 103
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 104 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 163
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 164 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 223
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 224 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 283
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 284 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 343
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
||||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||||
Sbjct: 344 cttctgtggatagcatactagagatgaaagaaccagttcttgacaagctatgggatatta 403
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| ||||| || ||||| ||||| | ||||| ||||| || || | ||||||| ||||
Sbjct: 404 atgtcaaagcatctattcttctactgcaggacgctgcaccacatttgaggaagggatcat 463
Query: 470 ctgtgattattatttcttcaattgctggttacaatcc 506
||||||| || ||||||||||||||||| || |||||
Sbjct: 464 ctgtgataataatttcttcaattgctggctataatcc 500
>gb|AV913801.1|AV913801 AV913801 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f13 5', mRNA sequence
Length = 599
Score = 375 bits (189), Expect = e-102
Identities = 484/581 (83%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 197 acgaggcggtggaggggctcagggccaa-gggtatcaccgcggttggtgccgtctgccac 255
|||||||||||||||| ||||||| ||| ||| ||||| | || || ||||||||||||
Sbjct: 19 acgaggcggtggagggcctcagggtcaaaggggatcactgttgtgggggccgtctgccac 78
Query: 256 gtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaagagctttgggcac 315
|||||| |||| | ||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 79 gtctccaacgccgaacagcgcaagcacctcatcgacacggccgtcaagaattttggacat 138
Query: 316 atagatattcttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatg 375
|| |||||| |||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct: 139 attgatattgttgtctccaatgctgctgcaaatccttctgtggatagcatactagagatg 198
Query: 376 aaagagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttatt 435
||||| | ||||| || ||||| ||||||||||| ||||| || ||||| ||||| |
Sbjct: 199 aaagaaccagttcttgacaagctatgggatattaatgtcaaagcatctattcttctactg 258
Query: 436 caggatgctgctcctcacctacggaaggggtcatctgtgattattatttcttcaattgct 495
||||| ||||| || || | ||||||| ||||||||||| || |||||||||||||||
Sbjct: 259 caggacgctgcaccacatttgaggaagggatcatctgtgataataatttcttcaattgct 318
Query: 496 ggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggt 555
|| || ||||| ||| || || | ||||||||||| |||||||| || || |||||
Sbjct: 319 ggctataatcctgaagcagctttatcgatgtatggtgttacaaagaccgccctttttggc 378
Query: 556 ctcacgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccct 615
|| ||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||
Sbjct: 379 cttacgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcct 438
Query: 616 ggttttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagag 675
||||||||||||||||| |||||| ||||||||||| |||||||||||||| || |||
Sbjct: 439 ggttttgttcctacacgttttgctggtttcctcacaactaatgagaccattagaaatgag 498
Query: 676 cttaacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcg 735
|| | |||||||| || |||||||||||||||| ||||||||||||||| | || ||
Sbjct: 499 ctcatcgagaggagcatacttaagagattgggtagcgtggaagacatggcttcagccgcc 558
Query: 736 gcttttctggcgtctgacgacgcatcatacattacggctga 776
||||| ||||| || ||||| ||||| | |||||| |||||
Sbjct: 559 gctttcctggcatccgacgatgcatccttcattacagctga 599
>gb|CA004210.1|CA004210 HS16O15r HS Hordeum vulgare subsp. vulgare cDNA clone HS16O15
5-PRIME, mRNA sequence
Length = 429
Score = 347 bits (175), Expect = 4e-094
Identities = 283/319 (88%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 104 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 163
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 164 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 223
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 224 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 283
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 284 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 343
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||
Sbjct: 344 acacggccgtcaagaattttggacatattgatattgttgtctccaatgctgctgcaaatc 403
Query: 350 cttctgtagatagcatact 368
||||||| |||||||||||
Sbjct: 404 cttctgtggatagcatact 422
>gb|CA032535.1|CA032535 HX13F08r HX Hordeum vulgare subsp. vulgare cDNA clone HX13F08
5-PRIME, mRNA sequence
Length = 663
Score = 339 bits (171), Expect = 1e-091
Identities = 402/479 (83%)
Strand = Plus / Plus
Query: 319 gatattcttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaa 378
|||||| |||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 123 gatattgttgtctccaatgctgctgcaaatccttctgtggatagcatactagagatgaaa 182
Query: 379 gagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcag 438
|| | ||||| || ||||| ||||||||||| ||||| || ||||| ||||| | |||
Sbjct: 183 gaaccagttcttgacaagctatgggatattaatgtcaaagcatctattcttctactgcag 242
Query: 439 gatgctgctcctcacctacggaaggggtcatctgtgattattatttcttcaattgctggt 498
|| ||||| || || | ||||||| ||||||||||| || |||||||||||||||||
Sbjct: 243 gacgctgcaccacatttgaggaagggatcatctgtgataataatttcttcaattgctggc 302
Query: 499 tacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggtctc 558
|| ||||| ||| || || | ||||||||||| |||||||| || || ||||| ||
Sbjct: 303 tataatcctgaagcagctttatcgatgtatggtgttacaaagaccgccctttttggcctt 362
Query: 559 acgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggt 618
||||||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||
Sbjct: 363 acgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggt 422
Query: 619 tttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagctt 678
|||||||||||||| |||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 423 tttgttcctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctc 482
Query: 679 aacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggct 738
| |||||||| || |||||||||||||||| ||||||||||||||| | || || |||
Sbjct: 483 atcgagaggagcatacttaagagattgggtagcgtggaagacatggcttcagccgccgct 542
Query: 739 tttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||| || ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 543 ttcctggcatccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 601
>gb|BU975068.1|BU975068 HB29P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB29P21
5-PRIME, mRNA sequence
Length = 565
Score = 333 bits (168), Expect = 7e-090
Identities = 396/472 (83%)
Strand = Plus / Plus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| | |
Sbjct: 12 ttgtctccaatgctgctgcaaatccttctgtggatagcatactagagatgaaagaaccag 71
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctg 445
|||| || ||||| ||||||||||| ||||| || ||||| ||||| | ||||| ||||
Sbjct: 72 ttcttgacaagctatgggatattaatgtcaaagcatctattcttctactgcaggacgctg 131
Query: 446 ctcctcacctacggaaggggtcatctgtgattattatttcttcaattgctggttacaatc 505
| || || | ||||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 132 caccacatttgaggaagggatcatctgtgataataatttcttcaattgctggctataatc 191
Query: 506 cagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
| ||| || || | ||||||||||| |||||||| || || ||||| || |||||||
Sbjct: 192 ctgaagcagctttatcgatgtatggtgttacaaagaccgccctttttggccttacgaagg 251
Query: 566 ctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttgttc 625
|||||||| ||||||||| || |||| ||||||||||||||||| |||||||||||||
Sbjct: 252 ctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggttttgttc 311
Query: 626 ctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgaga 685
||||||| |||||| ||||||||||| |||||||||||||| || ||||| | |||||
Sbjct: 312 ctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctcatcgaga 371
Query: 686 ggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggcttttctgg 745
||| || |||||||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 372 ggagcatacttaagagattgggtagcgtggaagacatggcttcagccgccgctttcctgg 431
Query: 746 cgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
| || ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 432 catccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 483
>gb|AV916829.1|AV916829 AV916829 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19m12 5', mRNA sequence
Length = 468
Score = 325 bits (164), Expect = 2e-087
Identities = 383/456 (83%)
Strand = Plus / Plus
Query: 271 cagcgcaagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtc 330
||||||||| ||||||||| ||||||||||||| ||||| || || |||||| |||||
Sbjct: 9 cagcgcaagcacctcatcgacacggccgtcaagaattttggacatattgatattgttgtc 68
Query: 331 tccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctc 390
||||||||||| |||||||||||||| ||||||||||| || |||||||| | |||||
Sbjct: 69 tccaatgctgctgcaaatccttctgtggatagcatactagagatgaaagaaccagttctt 128
Query: 391 gataagctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcct 450
|| ||||| ||||||||||| ||||| || ||||| ||||| | ||||| ||||| ||
Sbjct: 129 gacaagctatgggatattaatgtcaaagcatctattcttctactgcaggacgctgcacca 188
Query: 451 cacctacggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaa 510
|| | ||||||| ||||||||||| || ||||||||||||||||| || ||||| |||
Sbjct: 189 catttgaggaagggatcatctgtgataataatttcttcaattgctggctataatcctgaa 248
Query: 511 caaggattgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctctt 570
|| || | ||||||||||| |||||||| || || ||||| || ||||||||||||
Sbjct: 249 gcagctttatcgatgtatggtgttacaaagaccgccctttttggccttacgaaggctctt 308
Query: 571 gctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctaca 630
||| ||||||||| || |||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 309 gctactgagatgggcccaaatacccgtgttaactgtatagctcctggttttgttcctaca 368
Query: 631 cggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggacc 690
|| |||||| ||||||||||| |||||||||||||| || ||||| | |||||||| |
Sbjct: 369 cgttttgctggtttcctcacaactaatgagaccattagaaatgagctcatcgagaggagc 428
Query: 691 aagcttaagagattgggtactgtggaagacatggct 726
| |||||||||||||||| |||||||||||||||
Sbjct: 429 atacttaagagattgggtagcgtggaagacatggct 464
>gb|BU975172.1|BU975172 HB30F01r BC Hordeum vulgare subsp. vulgare cDNA clone HB30F01
5-PRIME, mRNA sequence
Length = 414
Score = 287 bits (145), Expect = 3e-076
Identities = 337/401 (84%)
Strand = Plus / Plus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| | |
Sbjct: 12 ttgtctccaatgctgctgcaaatccttctgtggatagcatactagagatgaaagaaccag 71
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctg 445
|||| || ||||| ||||||||||| ||||| || ||||| ||||| | ||||| ||||
Sbjct: 72 ttcttgacaagctatgggatattaatgtcaaagcatctattcttctactgcaggacgctg 131
Query: 446 ctcctcacctacggaaggggtcatctgtgattattatttcttcaattgctggttacaatc 505
| || || | ||||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 132 caccacatttgaggaagggatcatctgtgataataatttcttcaattgctggctataatc 191
Query: 506 cagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
| ||| || || | ||||||||||| |||||||| || || ||||| || |||||||
Sbjct: 192 ctgaagcagctttatcgatgtatggtgttacaaagaccgccctttttggccttacgaagg 251
Query: 566 ctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttgttc 625
|||||||| ||||||||| || |||| ||||||||||||||||| |||||||||||||
Sbjct: 252 ctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggttttgttc 311
Query: 626 ctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgaga 685
||||||| |||||| ||||||||||| |||||||||||||| || ||||| | |||||
Sbjct: 312 ctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctcatcgaga 371
Query: 686 ggaccaagcttaagagattgggtactgtggaagacatggct 726
||| || |||||||||||||||| |||||||||||||||
Sbjct: 372 ggagcatacttaagagattgggtagcgtggaagacatggct 412
>gb|BJ472477.1|BJ472477 BJ472477 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l23 5', mRNA sequence
Length = 622
Score = 266 bits (134), Expect = 1e-069
Identities = 225/254 (88%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 75 cggcgatggaggt-aagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 133
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 134 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 193
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 194 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 253
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||| | || || |||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct: 254 tcactgttgtgggggccgtctgccacgtctccaacgccgaacagcgcaagcacctcatcg 313
Query: 290 agacggccgtcaag 303
| ||||||||||||
Sbjct: 314 acacggccgtcaag 327
>gb|BU998572.1|BU998572 HI11H17r HI Hordeum vulgare subsp. vulgare cDNA clone HI11H17
5-PRIME, mRNA sequence
Length = 654
Score = 252 bits (127), Expect = 2e-065
Identities = 309/370 (83%)
Strand = Plus / Plus
Query: 319 gatattcttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaa 378
|||||| |||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 279 gatattgttgtctccaatgctgctgcaaatccttctgtggatagcatactagagatgaaa 338
Query: 379 gagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcag 438
|| | ||||| || ||||| ||||||||||| ||||| || ||||| ||||| | |||
Sbjct: 339 gaaccagttcttgacaagctatgggatattaatgtcaaagcatctattcttctactgcag 398
Query: 439 gatgctgctcctcacctacggaaggggtcatctgtgattattatttcttcaattgctggt 498
|| ||||| || || | ||||||| ||||||||||| || |||||||||||||||||
Sbjct: 399 gacgctgcaccacatttgaggaagggatcatctgtgataataatttcttcaattgctggc 458
Query: 499 tacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggtctc 558
|| ||||| ||| || || | ||||||||||| |||||||| || || ||||| ||
Sbjct: 459 tataatcctgaagcagctttatcgatgtatggtgttacaaagaccgccctttttggcctt 518
Query: 559 acgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggt 618
||||||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||
Sbjct: 519 acgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggt 578
Query: 619 tttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagctt 678
| |||||||||||| |||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 579 tntgttcctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctc 638
Query: 679 aacgagagga 688
| ||||||||
Sbjct: 639 atcgagagga 648
>gb|BQ766883.1|BQ766883 EBro08_SQ007_K09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_K09 5', mRNA sequence
Length = 688
Score = 236 bits (119), Expect = 1e-060
Identities = 236/275 (85%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
||||||||||| |||||||| || || ||||| || ||||||||||||||| |||||||
Sbjct: 36 atgtatggtgttacaaagaccgccctttttggccttacgaaggctcttgctactgagatg 95
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 642
|| || |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct: 96 ggcccaaatacccgtgttaactgtatagctcctggttttgttcctacacgttttgctggt 155
Query: 643 ttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagaga 702
||||||||| |||||||||||||| || ||||| | |||||||| || |||||||||
Sbjct: 156 ttcctcacaactaatgagaccattagaaatgagctcatcgagaggagcatacttaagaga 215
Query: 703 ttgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatca 762
||||||| ||||||||||||||| | || || ||||| ||||| || ||||| |||||
Sbjct: 216 ttgggtagcgtggaagacatggcttcagccgccgctttcctggcatccgacgatgcatcc 275
Query: 763 tacattacggctgaaaccattgttgttgctggagg 797
| |||||| |||||||| |||||||||||||||||
Sbjct: 276 ttcattacagctgaaacaattgttgttgctggagg 310
>gb|BM375790.2|BM375790 EBem06_SQ004_G19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_G19 5', mRNA sequence
Length = 334
Score = 230 bits (116), Expect = 7e-059
Identities = 167/184 (90%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 132 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 191
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| |||||||||||||||| |||||| | |||||| ||||| |||||||
Sbjct: 192 cgcagggcatcggactcgccatcgccgagctcctcggccgggagggtgccgcggtcgtca 251
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |
Sbjct: 252 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggga 311
Query: 230 tcac 233
||||
Sbjct: 312 tcac 315
>gb|AV924629.1|AV924629 AV924629 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16f07 5', mRNA sequence
Length = 258
Score = 222 bits (112), Expect = 2e-056
Identities = 185/209 (88%), Gaps = 1/209 (0%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 28 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgncgtgacggcttcca 87
Query: 110 cgatggggatcggc-ctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtc 168
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| ||||||
Sbjct: 88 cgcagggcatcggnactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtc 147
Query: 169 atctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggt 228
|||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||
Sbjct: 148 atctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagggg 207
Query: 229 atcaccgcggttggtgccgtctgccacgt 257
||||| | || || |||| |||||||||
Sbjct: 208 atcactgttgtgggggccgnctgccacgt 236
>gb|BU972357.1|BU972357 HB21G20r BC Hordeum vulgare subsp. vulgare cDNA clone HB21G20
5-PRIME, mRNA sequence
Length = 256
Score = 220 bits (111), Expect = 7e-056
Identities = 160/177 (90%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct: 80 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtnntgacggcttcca 139
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| | |||||| ||||| |||||||
Sbjct: 140 cgcagggcatcggactcgccatcgccgagcgcctcggccgggagggtgccgcggtcgtca 199
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagg 226
||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||
Sbjct: 200 tctcctcccgcaagcagaaaaacgtggacgaggcggtggagggcctcagggcaaagg 256
>gb|BQ761130.1|BQ761130 EBro04_SQ004_D16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ004_D16 5', mRNA sequence
Length = 553
Score = 214 bits (108), Expect = 4e-054
Identities = 213/248 (85%)
Strand = Plus / Plus
Query: 550 tttggtctcacgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtata 609
||||| || ||||||||||||||| ||||||||| || |||| |||||||||||||||
Sbjct: 11 tttggccttacgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtata 70
Query: 610 gcccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagaccattagg 669
|| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 71 gctcctggttttgttcctacacgttttgctggtttcctcacaactaatgagaccattaga 130
Query: 670 aaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcg 729
|| ||||| | |||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct: 131 aatgagctcatcgagaggagcatacttaagagattgggtagcgtggaagacatggcttca 190
Query: 730 gctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgtt 789
|| || ||||| ||||| || ||||| ||||| | |||||| |||||||| |||||||||
Sbjct: 191 gccgccgctttcctggcatccgacgatgcatccttcattacagctgaaacaattgttgtt 250
Query: 790 gctggagg 797
||||||||
Sbjct: 251 gctggagg 258
>gb|AV921413.1|AV921413 AV921413 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f13 3', mRNA sequence
Length = 657
Score = 212 bits (107), Expect = 2e-053
Identities = 206/239 (86%)
Strand = Plus / Minus
Query: 559 acgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggt 618
||||||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||
Sbjct: 654 acgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggt 595
Query: 619 tttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagctt 678
|||||||||||||| |||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 594 tttgttcctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctc 535
Query: 679 aacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggct 738
| |||||||| || |||||||||||||||| ||||||||||||||| | || || |||
Sbjct: 534 atcgagaggagcatacttaagagattgggtagcgtggaagacatggcttcagccgccgct 475
Query: 739 tttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||| || ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 474 ttcctggcatccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 416
>gb|AV929715.1|AV929715 AV929715 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16e19 3', mRNA sequence
Length = 597
Score = 212 bits (107), Expect = 2e-053
Identities = 206/239 (86%)
Strand = Plus / Minus
Query: 559 acgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggt 618
||||||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||
Sbjct: 594 acgaaggctcttgctactgagatgggcccaaatacccgtgttaactgtatagctcctggt 535
Query: 619 tttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagctt 678
|||||||||||||| |||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 534 tttgttcctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctc 475
Query: 679 aacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggct 738
| |||||||| || |||||||||||||||| ||||||||||||||| | || || |||
Sbjct: 474 atcgagaggagcatacttaagagattgggtagcgtggaagacatggcttcagccgccgct 415
Query: 739 tttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||| || ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 414 ttcctggcatccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 356
>gb|AW982502.2|AW982502 HVSMEg0003H02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003H02f, mRNA sequence
Length = 562
Score = 186 bits (94), Expect = 9e-046
Identities = 175/202 (86%)
Strand = Plus / Plus
Query: 596 gtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaaa 655
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 1 gtgttaactgtatagctcctggttttgttcctacacgttttgctggtttcctcacaacta 60
Query: 656 atgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtgg 715
||||||||||||| || ||||| | |||||||| || |||||||||||||||| ||||
Sbjct: 61 atgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtgg 120
Query: 716 aagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggctg 775
||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| ||||
Sbjct: 121 aagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagctg 180
Query: 776 aaaccattgttgttgctggagg 797
|||| |||||||||||||||||
Sbjct: 181 aaacaattgttgttgctggagg 202
>gb|BI956261.1|BI956261 HVSMEn0001L13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001L13f, mRNA sequence
Length = 1203
Score = 184 bits (93), Expect = 4e-045
Identities = 149/168 (88%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 39 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 98
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| || | ||| ||||||||||||||||||| | |||||| ||||| ||| |||
Sbjct: 99 cgcagggcgtctgactcaccatcgccgagcgcctcggccgggagggtgccgcggtcttca 158
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctca 217
||||||||||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 159 tctcctcccgcaagcagaaaaacgtggacgaggcggtgganggcctca 206
>gb|CA003541.1|CA003541 HS14M23r HS Hordeum vulgare subsp. vulgare cDNA clone HS14M23
5-PRIME, mRNA sequence
Length = 147
Score = 139 bits (70), Expect = 2e-031
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 38 cggcgatggaggtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcttcca 97
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|| ||| ||||| ||||||||||||||||||||||| | ||||||
Sbjct: 98 cgcagggcatcggactcgccatcgccgagcgcctcggccgggaggg 143
>gb|AV922126.1|AV922126 AV922126 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19m12 3', mRNA sequence
Length = 619
Score = 137 bits (69), Expect = 8e-031
Identities = 147/173 (84%)
Strand = Plus / Minus
Query: 625 cctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgag 684
|||||||| |||||| ||||||||||| |||||||||||||| || ||||| | ||||
Sbjct: 619 cctacacgttttgctggtttcctcacaactaatgagaccattagaaatgagctcatcgag 560
Query: 685 aggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggcttttctg 744
|||| || |||||||||||||||| ||||||||||||||| | || || ||||| |||
Sbjct: 559 aggagcatacttaagagattgggtagcgtggaagacatggcttcagccgccgctttcctg 500
Query: 745 gcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| || ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 499 gcatccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 447
>gb|CB859750.1|CB859750 HI11H17w HI Hordeum vulgare subsp. vulgare cDNA clone HI11H17
3-PRIME, mRNA sequence
Length = 623
Score = 131 bits (66), Expect = 5e-029
Identities = 144/170 (84%)
Strand = Plus / Minus
Query: 628 acacggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagagg 687
||||| |||||| ||||||||||| |||||||||||||| || ||||| | |||||||
Sbjct: 623 acacgttttgctggtttcctcacaactaatgagaccattagaaatgagctcatcgagagg 564
Query: 688 accaagcttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcg 747
| || |||||||||||||||| ||||||||||||||| | || || ||||| |||||
Sbjct: 563 agcatacttaagagattgggtagcgtggaagacatggcttcagccgccgctttcctggca 504
Query: 748 tctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||| ||||| | |||||| |||||||| |||||||||||||||||
Sbjct: 503 tccgacgatgcatccttcattacagctgaaacaattgttgttgctggagg 454
>gb|AL510121.1|AL510121 AL510121 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03P14u 3',
mRNA sequence
Length = 700
Score = 117 bits (59), Expect = 7e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
|||||||||||||| || ||||| | |||||||| || |||||||||||||||| |||
Sbjct: 592 aatgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtg 533
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| |||
Sbjct: 532 gaagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagct 473
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 472 gaaacaattgttgttgctggagg 450
>gb|AV927657.1|AV927657 AV927657 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3a23 3', mRNA sequence
Length = 569
Score = 117 bits (59), Expect = 7e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
|||||||||||||| || ||||| | |||||||| || |||||||||||||||| |||
Sbjct: 559 aatgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtg 500
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| |||
Sbjct: 499 gaagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagct 440
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 439 gaaacaattgttgttgctggagg 417
>gb|BQ464409.1|BQ464409 HF02D05r HF Hordeum vulgare subsp. vulgare cDNA clone HF02D05
5-PRIME, mRNA sequence
Length = 582
Score = 117 bits (59), Expect = 7e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
|||||||||||||| || ||||| | |||||||| || |||||||||||||||| |||
Sbjct: 16 aatgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtg 75
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| |||
Sbjct: 76 gaagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagct 135
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 136 gaaacaattgttgttgctggagg 158
>gb|BQ766420.1|BQ766420 EBro08_SQ005_O20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_O20 5', mRNA sequence
Length = 484
Score = 117 bits (59), Expect = 7e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
|||||||||||||| || ||||| | |||||||| || |||||||||||||||| |||
Sbjct: 10 aatgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtg 69
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| |||
Sbjct: 70 gaagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagct 129
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 130 gaaacaattgttgttgctggagg 152
>gb|BU984942.1|BU984942 HF05K03r HF Hordeum vulgare subsp. vulgare cDNA clone HF05K03
5-PRIME, mRNA sequence
Length = 585
Score = 117 bits (59), Expect = 7e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
|||||||||||||| || ||||| | |||||||| || |||||||||||||||| |||
Sbjct: 15 aatgagaccattagaaatgagctcatcgagaggagcatacttaagagattgggtagcgtg 74
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||| | || || ||||| ||||| || ||||| ||||| | |||||| |||
Sbjct: 75 gaagacatggcttcagccgccgctttcctggcatccgacgatgcatccttcattacagct 134
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 135 gaaacaattgttgttgctggagg 157
>gb|BM097258.2|BM097258 EBpi07_SQ002_O10_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_O10 5', mRNA sequence
Length = 530
Score = 60.0 bits (30), Expect = 1e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 736 gcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctgga 795
||||| ||||| || ||||| ||||| | |||||| |||||||| |||||||||||||||
Sbjct: 14 gctttcctggcatccgacgatgcatccttcattacagctgaaacaattgttgttgctgga 73
Query: 796 gg 797
||
Sbjct: 74 gg 75
>gb|BM371239.2|BM371239 EBro04_SQ003_P02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_P02 5', mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 ctggaggggaaggtggccatcgt 98
|||||||||||||||||||||||
Sbjct: 272 ctggaggggaaggtggccatcgt 294
>gb|BU998194.1|BU998194 HI10E13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E13
5-PRIME, mRNA sequence
Length = 371
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 ctggaggggaaggtggccatcgt 98
|||||||||||||||||||||||
Sbjct: 170 ctggaggggaaggtggccatcgt 192
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,424
Number of Sequences: 312970
Number of extensions: 116424
Number of successful extensions: 34818
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34740
Number of HSP's gapped (non-prelim): 63
length of query: 992
length of database: 175,134,539
effective HSP length: 19
effective length of query: 973
effective length of database: 169,188,109
effective search space: 164620030057
effective search space used: 164620030057
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)