BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 ... 361 4e-098
gb|AL505573.1|AL505573 AL505573 Hordeum vulgare Barke roots... 307 5e-082
gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no... 299 1e-079
gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no... 278 4e-073
gb|AL503638.1|AL503638 AL503638 Hordeum vulgare Barke roots... 234 6e-060
gb|BQ759817.1|BQ759817 EBpi05_SQ004_A17_R pistil, 8 DPA, no... 232 2e-059
gb|BQ759821.1|BQ759821 EBpi05_SQ004_B15 _R pistil, 8 DPA, n... 214 5e-054
gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA li... 98 8e-019
gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedl... 90 2e-016
gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedl... 90 2e-016
gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA li... 90 2e-016
gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. v... 90 2e-016
gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. v... 90 2e-016
gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. v... 90 2e-016
gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. v... 90 2e-016
gb|CA027499.1|CA027499 HZ59C02r HZ Hordeum vulgare subsp. v... 90 2e-016
gb|BJ468853.1|BJ468853 BJ468853 K. Sato unpublished cDNA li... 84 1e-014
gb|AV922700.1|AV922700 AV922700 K. Sato unpublished cDNA li... 76 3e-012
gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedl... 72 5e-011
gb|BG367217.1|BG367217 HVSMEi0011F11f Hordeum vulgare 20 DA... 72 5e-011
gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA li... 72 5e-011
gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA li... 72 5e-011
gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA li... 72 5e-011
gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA li... 72 5e-011
gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. v... 72 5e-011
gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, ... 72 5e-011
gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. v... 72 5e-011
gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA li... 68 7e-010
gb|BJ462697.1|BJ462697 BJ462697 K. Sato unpublished cDNA li... 66 3e-009
gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DA... 64 1e-008
gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachi... 64 1e-008
gb|BU999595.1|BU999595 HI14P19r HI Hordeum vulgare subsp. v... 50 2e-004
gb|BG300460.1|BG300460 HVSMEb0017C05f Hordeum vulgare seedl... 42 0.042
>gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0089K10f, mRNA sequence
Length = 988
Score = 361 bits (182), Expect = 4e-098
Identities = 290/326 (88%)
Strand = Plus / Minus
Query: 871 atgatgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagtt 930
||||||||||| | |||||| |||||| | ||||||||||||||||| |||||||||||
Sbjct: 455 atgatgtcctcggacatcttttttgccatgccatatggattgataggtatctgaggagtt 396
Query: 931 gtttctacaataggcatcgtatcaggttcaccataggttgcacacgtactcgagtaaatc 990
||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||||||
Sbjct: 395 gtttcgacaataggcattgtgtcaggttcaccatatgttgcacaagtactcgagtaaatc 336
Query: 991 agagtatttacattatatgctgccattgcctcaagaactgtcaatgtgttcgatgttatg 1050
||||| |||||||||| |||||||||||||||||| |||||||| || || |||||||||
Sbjct: 335 agagtttttacattatgtgctgccattgcctcaagcactgtcaacgtatttgatgttatg 276
Query: 1051 ttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagcaaag 1110
||||||||| |||| ||||||||| |||||||||||||||||||||||| || ||||||
Sbjct: 275 ttgtggtagcaccttagtggctcctgtgtgctctcaccaacataagcaaccgcggcaaag 216
Query: 1111 tgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcgcct 1170
||||||||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||
Sbjct: 215 tgcataacagcatcaaacgcgttctccgaaaacattttgttcacagcttttgcgtctcct 156
Query: 1171 aagtcagcataaataaactgaagcct 1196
|| |||| || ||||||||||||||
Sbjct: 155 aaatcagtgtatataaactgaagcct 130
Score = 61.9 bits (31), Expect = 5e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatcttaagatcatgacagccatatttgatt 844
||||| || |||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 527 gggtccgacccaatcacattgaagtatctgaagatcatcacagccatgtttgatt 473
>gb|AL505573.1|AL505573 AL505573 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O06V 5', mRNA sequence
Length = 450
Score = 307 bits (155), Expect = 5e-082
Identities = 253/287 (88%)
Strand = Plus / Minus
Query: 874 atgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagttgtt 933
|||||||| | |||||| |||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 308 atgtcctcggacatcttttttgccttgccatatggattgataggtatgtgaggagttgtt 249
Query: 934 tctacaataggcatcgtatcaggttcaccataggttgcacacgtactcgagtaaatcaga 993
|| ||||||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 248 tcgacaataggcattgtgtcaggttcnccatatgttgcacaagtactngagtaaatcaga 189
Query: 994 gtatttacattatatgctgccattgcctcaagaactgtcaatgtgttcgatgttatgttg 1053
|| |||||||||| |||||||||||||||||| ||||||| || || |||| |||||||
Sbjct: 188 gtttttacattatgtgctgccattgcctcaagcnctgtcaacgtatttgatgntatgttg 129
Query: 1054 tggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagcaaagtgc 1113
||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct: 128 tggtagtaccttagtggctcctgtgtgctctcaccaacataagcaaccgcggcaaagtgc 69
Query: 1114 ataacagcgtcaaatgcattctccgaaaatattttcttcacagcttt 1160
|||||||| || || || ||||||||||| ||||| ||| |||||||
Sbjct: 68 ataacagcatcgaacgcgttctccgaaaacattttgttcgcagcttt 22
Score = 87.7 bits (44), Expect = 8e-016
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 727 gcaccggatatccgtccatgctcgcgtagctctggccttggagcttctcctagccgtccc 786
||||| || |||| ||||||||| || || || |||||||||||||| || || ||||||
Sbjct: 446 gcaccagaaatccttccatgctcacgcagttcaggccttggagcttccccaaggcgtccc 387
Query: 787 tctgggtctgatccaatcacgttgaagtatcttaagatcatgacagccat 836
|| |||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct: 386 tcagggtncgncccaatcacattgaagtatcttaagatcatcacagccat 337
>gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B16 5', mRNA sequence
Length = 646
Score = 299 bits (151), Expect = 1e-079
Identities = 430/523 (82%)
Strand = Plus / Minus
Query: 314 atcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcctgggcaaggc 373
||||||| ||| | |||||| |||||||||||||||||||||||| ||| || ||||
Sbjct: 637 atcaggccgacccgtatccgcccgggtgcgccttctgccatttccaggccgtcgcgaggc 578
Query: 374 tttggccaagatccgtgtattgggctgtccagttgaggtccatgaggattttcgacggat 433
| | || || ||||||| ||||||||||||||| || || | |||| || ||||| |
Sbjct: 577 tctcgcggaggtccgtgtgttgggctgtccagttcagctcgtcgcggatcttggacgggt 518
Query: 434 cgctgtatacctcggcataatctccaggtctacgggcaagatattcgaccttgatagaag 493
|||||| || ||||| || || || ||||| ||| | || || ||||||||||| | |
Sbjct: 517 tgctgtacacttcggcgtagtccccgggtctccggtcgaggtagtcgaccttgatggtcg 458
Query: 494 ctcccgttgccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttc 553
|||| || ||||||||||| |||||||||||||| ||||||| ||||||| || || |
Sbjct: 457 ctccggtcgccttcttgcacgcttctacaaactccttcactgacctacctttccccgtgc 398
Query: 554 cgacattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcat 613
|||| || ||||| ||||||||| |||| |||||||||||||||||| || |||||||
Sbjct: 397 cgacgttatagatcccaactttgttaggctcagctttaccaagagctttgacatgagcat 338
Query: 614 ctacaagatctgtgacatcgatgtagtctctaacgcaagttccatctgcagtggagtaat 673
| |||||||| |||||||| |||||||| || ||||| |||||||| ||||| | ||| |
Sbjct: 337 caacaagatcagtgacatctatgtagtcccttacgcatgttccatcagcagtagggtagt 278
Query: 674 cggttccacgaacctttagccctggaatgattcccaaagctgcatcaaagcaagcaccgg 733
| ||||| |||||||||||||||||||||||||| | ||||| ||||| || ||||| |
Sbjct: 277 ccgttcctcgaacctttagccctggaatgattcctgatgctgcgtcaaaacacgcaccag 218
Query: 734 atatccgtccatgctcgcgtagctctggccttggagcttctcctagccgtccctctgggt 793
| ||| ||||||||| || || || |||||||||||||| || || |||||||| ||||
Sbjct: 217 aaatctttccatgctcacgcagttcaggccttggagcttccccaaggcgtccctcagggt 158
Query: 794 ctgatccaatcacgttgaagtatcttaagatcatgacagccat 836
| || |||||||| |||||||||||||||||||| ||||||||
Sbjct: 157 ccgacccaatcacattgaagtatcttaagatcatcacagccat 115
Score = 75.8 bits (38), Expect = 3e-012
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 874 atgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagttgtt 933
|||||||| | |||||| |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 86 atgtcctcggacatcttttttgccttgccatatggattgataggtatgtgaggagtcgtt 27
Query: 934 tctacaataggcatcgtatcaggttc 959
|| |||||||||| || ||||||||
Sbjct: 26 tcgacaataggcaatgtgtcaggttc 1
>gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A16 5', mRNA sequence
Length = 587
Score = 278 bits (140), Expect = 4e-073
Identities = 374/452 (82%)
Strand = Plus / Minus
Query: 385 tccgtgtattgggctgtccagttgaggtccatgaggattttcgacggatcgctgtatacc 444
||||||| ||||||||||||||| || || | |||| || ||||| | |||||| ||
Sbjct: 566 tccgtgtgttgggctgtccagttcagctcgtcgcggatcttggacgggttgctgtacact 507
Query: 445 tcggcataatctccaggtctacgggcaagatattcgaccttgatagaagctcccgttgcc 504
||||| || || || ||||| ||| | || || ||||||||||| | ||||| || |||
Sbjct: 506 tcggcgtagtccccgggtctccggtcgaggtagtcgaccttgatggtcgctccggtcgcc 447
Query: 505 ttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattgtag 564
|||||||| |||||||||||||| ||||||| ||||||| || || ||||| || |||
Sbjct: 446 ttcttgcacgcttctacaaactccttcactgacctacctttccccgtgccgacgttatag 387
Query: 565 attccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaagatct 624
|| ||||||||| |||| |||||||||||||||||| || |||||||| ||||||||
Sbjct: 386 atcccaactttgttaggctcagctttaccaagagctttgacatgagcatcaacaagatca 327
Query: 625 gtgacatcgatgtagtctctaacgcaagttccatctgcagtggagtaatcggttccacga 684
|||||||| |||||||| || ||||| |||||||| ||||| | ||| || ||||| |||
Sbjct: 326 gtgacatctatgtagtcccttacgcatgttccatcagcagtagggtagtccgttcctcga 267
Query: 685 acctttagccctggaatgattcccaaagctgcatcaaagcaagcaccggatatccgtcca 744
||||||||||||||||||||||| | ||||| ||||| || ||||| || ||| ||||
Sbjct: 266 acctttagccctggaatgattcctgatgctgcgtcaaaacacgcaccagaaatctttcca 207
Query: 745 tgctcgcgtagctctggccttggagcttctcctagccgtccctctgggtctgatccaatc 804
||||| || || || |||||||||||||| || || |||||||| ||||| || ||||||
Sbjct: 206 tgctcacgcagttcaggccttggagcttccccaaggcgtccctcagggtccgacccaatc 147
Query: 805 acgttgaagtatcttaagatcatgacagccat 836
|| |||||||||||||||||||| ||||||||
Sbjct: 146 acattgaagtatcttaagatcatcacagccat 115
Score = 67.9 bits (34), Expect = 7e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 874 atgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagttgtt 933
|||||||| | |||||| |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 86 atgtcctcggacatcttttttgccttgccatatggattgataggtatgtgaggagtcgtt 27
Query: 934 tctacaataggcatcgtatcaggttc 959
| |||||||||| || ||||||||
Sbjct: 26 tggacaataggcaatgtgtcaggttc 1
>gb|AL503638.1|AL503638 AL503638 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O11T 5', mRNA sequence
Length = 189
Score = 234 bits (118), Expect = 6e-060
Identities = 162/177 (91%)
Strand = Plus / Minus
Query: 922 tgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtactc 981
|||||||||||||| ||||||||||| || |||||||| ||||| |||||||| ||||||
Sbjct: 180 tgaggagttgtttcgacaataggcattgtgtcaggttcnccatatgttgcacaagtactc 121
Query: 982 gagtaaatcagagtatttacattatatgctgccattgcctcaagaactgtcaatgtgttc 1041
|||||||||||||| |||||||||| |||||||||||||||||| |||||||| || ||
Sbjct: 120 gagtaaatcagagtttttacattatgtgctgccattgcctcaagcactgtcaacgtattt 61
Query: 1042 gatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataagca 1098
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 60 gatgttatgttgtggtagtaccttagtggctcctgtgtgctctcaccaacataagca 4
>gb|BQ759817.1|BQ759817 EBpi05_SQ004_A17_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A17 5', mRNA sequence
Length = 430
Score = 232 bits (117), Expect = 2e-059
Identities = 268/317 (84%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 520 acaaactcagtcactgatctaccttggcctgttccgacattgtagattccaactttgcct 579
|||||||| ||||||| ||||||| || || ||||| || ||||| |||||||||
Sbjct: 430 acaaactccttcactgacctacctttccccgtgccgacgttatagatcccaactttgta- 372
Query: 580 ggctgagctttaccaagagcttttacgtgagcatctacaagatctgtgacatcgatgtag 639
|||| |||||||||||||||||| || |||||||| |||||||| |||||||| ||||||
Sbjct: 371 ggctcagctttaccaagagctttgacatgagcatcaacaagatcagtgacatctatgtag 312
Query: 640 tctctaacgcaagttccatctgcagtggagtaatcggttccacgaacctttagccctgga 699
|| || ||||| |||||||| ||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 311 tcccttacgcatgttccatcagcagtagggtagtccgttcctcgaacctttagccctgga 252
Query: 700 atgattcccaaagctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctct 759
|||||||| | ||||| ||||| || ||||| || |||| ||||||||| || || ||
Sbjct: 251 atgattcctgatgctgcgtcaaaacacgcaccagaaatccttccatgctcacgcagttca 192
Query: 760 ggccttggagcttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctt 819
|||||||||||||| || || |||||||| ||||| || |||||||| ||||||||||||
Sbjct: 191 ggccttggagcttccccaaggcgtccctcagggtccgacccaatcacattgaagtatctt 132
Query: 820 aagatcatgacagccat 836
|||||||| ||||||||
Sbjct: 131 aagatcatcacagccat 115
Score = 97.6 bits (49), Expect = 8e-019
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 871 atgatgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagtt 930
||||||||||| | |||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 89 atgatgtcctcggacatcttttttgccttgccatatggattgataggtatctgaggagtc 30
Query: 931 gtttctacaataggcatcgtatcaggttc 959
||||| ||||||||||| || ||||||||
Sbjct: 29 gtttcgacaataggcattgtgtcaggttc 1
>gb|BQ759821.1|BQ759821 EBpi05_SQ004_B15 _R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B15 5', mRNA sequence
Length = 315
Score = 214 bits (108), Expect = 5e-054
Identities = 235/276 (85%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
||||| ||||||||| |||| |||||||||||||||||| || |||||||| ||||||
Sbjct: 309 tagatcccaactttgttaggctcagctttaccaagagctttgacatgagcatcaacaaga 250
Query: 622 tctgtgacatcgatgtagtctctaacgcaagttccatctgcagtggagtaatcggttcca 681
|| |||||||| |||||||| || ||||| |||||||| ||||| | ||| || |||||
Sbjct: 249 tcagtgacatctatgtagtcccttacgcatgttccatcagcagtagggtagtccgttcct 190
Query: 682 cgaacctttagccctggaatgattcccaaagctgcatcaaagcaagcaccggatatccgt 741
|||||||||||||||||||||||||| | ||||| |||||||| ||||| || |||| |
Sbjct: 189 cgaacctttagccctggaatgattcctgatgctgcgtcaaagcacgcaccagaaatcctt 130
Query: 742 ccatgctcgcgtagctctggccttggagcttctcctagccgtccctctgggtct-gatcc 800
|||||||| || || || ||||||||||||||||| || ||||| || |||||| || ||
Sbjct: 129 ccatgctcacgcagttcaggccttggagcttctccaaggcgtccttcagggtctcgaccc 70
Query: 801 aatcacgttgaagtatcttaagatcatgacagccat 836
||||| ||||||||| |||||||||| ||||||||
Sbjct: 69 catcacattgaagtatattaagatcatcacagccat 34
>gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak24n03 5', mRNA sequence
Length = 629
Score = 97.6 bits (49), Expect = 8e-019
Identities = 103/121 (85%)
Strand = Plus / Minus
Query: 1036 gtgttcgatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataa 1095
||||| ||||| || ||||| |||||||| || || |||||||| |||||||| |||||
Sbjct: 380 gtgtttgatgtaatattgtgatagtacctaaggggttccattgtactctcacccacatag 321
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||| || |||||||| ||||| ||||||||||| || |||||||| || ||||||
Sbjct: 320 gcaacagctgcgaagtgcatcacagcatcaaatgcattttcagaaaatatcttgttcaca 261
Query: 1156 g 1156
|
Sbjct: 260 g 260
Score = 71.9 bits (36), Expect = 5e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 783 tccctctgggtctgatccaatcacgttgaagtatcttaagatcatgacagccatat 838
||||||||||||||||||||| || ||||| |||||||| |||||||||| |||||
Sbjct: 624 tccctctgggtctgatccaatgacattgaaatatcttaaaatcatgacagacatat 569
>gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0004A09f, mRNA sequence
Length = 751
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagca 1107
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||||||
Sbjct: 150 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcagca 91
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 90 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 31
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 30 cctagatcagcat 18
Score = 56.0 bits (28), Expect = 3e-006
Identities = 118/148 (79%)
Strand = Plus / Minus
Query: 506 tcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattgtaga 565
||||||||||||| |||||||| ||||||| |||| | || || || |||||||| |
Sbjct: 689 tcttgcaagcttccacaaactccttcactgacctacttcttccggtgccaacattgtata 630
Query: 566 ttccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaagatctg 625
| |||||||||||| || || || || ||||| ||||| |||||||| || || |
Sbjct: 629 tgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccaggtcgg 570
Query: 626 tgacatcgatgtagtctctaacgcaagt 653
||||||||||||| ||||| ||||||||
Sbjct: 569 tgacatcgatgtaatctctcacgcaagt 542
>gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0007H02f, mRNA sequence
Length = 841
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagca 1107
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||||||
Sbjct: 434 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcagca 375
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 374 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 315
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 314 cctagatcagcat 302
>gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 5', mRNA sequence
Length = 533
Score = 89.7 bits (45), Expect = 2e-016
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 1036 gtgttcgatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataa 1095
||||| ||||| || ||||| || ||||| || || |||||||| |||||||| |||||
Sbjct: 302 gtgtttgatgtaatattgtgataatacctaaggggttccattgtactctcacccacatag 243
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||| || |||||||| ||||| ||||||||||| || |||||||| || ||||||
Sbjct: 242 gcaacagctgcgaagtgcatcacagcatcaaatgcattttcagaaaatatcttgttcaca 183
Query: 1156 g 1156
|
Sbjct: 182 g 182
>gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. vulgare cDNA clone HB01N17
5-PRIME, mRNA sequence
Length = 521
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagca 1107
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||||||
Sbjct: 373 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcagca 314
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 313 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 254
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 253 cctagatcagcat 241
>gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB26C19
5-PRIME, mRNA sequence
Length = 554
Score = 89.7 bits (45), Expect = 2e-016
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 1036 gtgttcgatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataa 1095
||||| ||||| || ||||| || ||||| || || |||||||| |||||||| |||||
Sbjct: 477 gtgtttgatgtaatattgtgataatacctaaggggttccattgtactctcacccacatag 418
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||| || |||||||| ||||| ||||||||||| || |||||||| || ||||||
Sbjct: 417 gcaacagctgcgaagtgcatcacagcatcaaatgcattttcagaaaatatcttgttcaca 358
Query: 1156 g 1156
|
Sbjct: 357 g 357
>gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. vulgare cDNA clone HB27I16
5-PRIME, mRNA sequence
Length = 450
Score = 89.7 bits (45), Expect = 2e-016
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 1036 gtgttcgatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataa 1095
||||| ||||| || ||||| || ||||| || || |||||||| |||||||| |||||
Sbjct: 207 gtgtttgatgtaatattgtgataatacctaaggggttccattgtactctcacccacatag 148
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||| || |||||||| ||||| ||||||||||| || |||||||| || ||||||
Sbjct: 147 gcaacagctgcgaagtgcatcacagcatcaaatgcattttcagaaaatatcttgttcaca 88
Query: 1156 g 1156
|
Sbjct: 87 g 87
Score = 69.9 bits (35), Expect = 2e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 784 ccctctgggtctgatccaatcacgttgaagtatcttaagatcatgacagccatat 838
|||||||||||||||||||| || ||||| |||||||| |||||||||| |||||
Sbjct: 450 ccctctgggtctgatccaatgacattgaaatatcttaaaatcatgacagacatat 396
>gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. vulgare cDNA clone HB30H20
5-PRIME, mRNA sequence
Length = 479
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagca 1107
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||||||
Sbjct: 143 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcagca 84
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 83 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 24
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 23 cctagatcagcat 11
>gb|CA027499.1|CA027499 HZ59C02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59C02
5-PRIME, mRNA sequence
Length = 405
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagcagca 1107
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||||||
Sbjct: 330 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcagca 271
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 270 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 211
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 210 cctagatcagcat 198
>gb|BJ468853.1|BJ468853 BJ468853 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd27i15 5', mRNA sequence
Length = 561
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 1079 tgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccg 1138
||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct: 561 tgctctcgcccacataagcaacggcagcaaagtgcatgacagcatcaaatgcattttctg 502
Query: 1139 aaaatattttcttcacagctttggcatcgcctaagtcagcat 1180
|||||| | || |||||||| |||||||||| |||||||
Sbjct: 501 cgaatattctgttaacagcttttgcatcgcctagatcagcat 460
>gb|AV922700.1|AV922700 AV922700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd2a02 5', mRNA sequence
Length = 608
Score = 75.8 bits (38), Expect = 3e-012
Identities = 111/134 (82%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1048 atgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaacagca-gc 1106
||||| || |||||||| || ||||| | |||||||| || ||||||||||| ||| ||
Sbjct: 598 atgttatgatagtacctcagaggctcaagcgtgctctcgcccacataagcaacggcaagc 539
Query: 1107 aaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatc 1166
||||||||| ||||| ||||||||||| || | |||||| | || |||||||| |||||
Sbjct: 538 aaagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatc 479
Query: 1167 gcctaagtcagcat 1180
||||| |||||||
Sbjct: 478 gcctagatcagcat 465
>gb|BF630195.2|BF630195 HVSMEb0008E12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008E12f, mRNA sequence
Length = 497
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 171 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 112
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 111 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 52
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 51 tcggtgacatcgatgtaatctctcacgcaagt 20
>gb|BG367217.1|BG367217 HVSMEi0011F11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011F11f, mRNA sequence
Length = 873
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 171 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 112
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 111 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 52
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 51 tcggtgacatcgatgtaatctctcacgcaagt 20
>gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2a02 3', mRNA sequence
Length = 691
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 300 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 359
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 360 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 419
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 420 tcggtgacatcgatgtaatctctcacgcaagt 451
>gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2b02 3', mRNA sequence
Length = 532
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 230 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 289
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 290 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 349
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 350 tcggtgacatcgatgtaatctctcacgcaagt 381
>gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i15 3', mRNA sequence
Length = 678
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 299 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 358
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 359 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 418
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 419 tcggtgacatcgatgtaatctctcacgcaagt 450
>gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 3', mRNA sequence
Length = 658
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 302 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 361
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 362 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 421
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 422 tcggtgacatcgatgtaatctctcacgcaagt 453
>gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. vulgare cDNA clone HX04E07
3-PRIME, mRNA sequence
Length = 516
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 310 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 369
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 370 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 429
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 430 tcggtgacatcgatgtaatctctcacgcaagt 461
>gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_O16 5', mRNA sequence
Length = 526
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 198 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 139
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 138 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 79
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 78 tcggtgacatcgatgtaatctctcacgcaagt 47
>gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42A04
5-PRIME, mRNA sequence
Length = 533
Score = 71.9 bits (36), Expect = 5e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 224 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 165
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 164 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 105
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 104 tcggtgacatcgatgtaatctctcacgcaagt 73
>gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n03 3', mRNA sequence
Length = 699
Score = 67.9 bits (34), Expect = 7e-010
Identities = 127/158 (80%)
Strand = Plus / Plus
Query: 598 gcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaagttcca 657
||||| || ||||||||||| |||||||||||||| ||||||||||| | ||| ||||||
Sbjct: 541 gctttcacatgagcatctactagatctgtgacatcaatgtagtctcttatgcaggttcca 600
Query: 658 tctgcagtggagtaatcggttccacgaacctttagccctggaatgattcccaaagctgca 717
|| || || | ||||| |||| |||||| | |||| ||||| ||| | ||||||
Sbjct: 601 tcagctgtaggataatctattcctttaaccttcaatcctgaaatgactcctagtgctgca 660
Query: 718 tcaaagcaagcaccggatatccgtccatgctcgcgtag 755
|||||||| || || ||||| | ||||||||| |||||
Sbjct: 661 tcaaagcatgctccagatattcttccatgctctcgtag 698
>gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 3', mRNA sequence
Length = 678
Score = 67.9 bits (34), Expect = 7e-010
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 598 gcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaagttcca 657
||||| || ||||||||||| |||||||||||||| ||||||||||| | ||| ||||||
Sbjct: 544 gctttcacatgagcatctactagatctgtgacatcaatgtagtctcttatgcaggttcca 603
Query: 658 tc 659
||
Sbjct: 604 tc 605
>gb|BJ462697.1|BJ462697 BJ462697 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 5', mRNA sequence
Length = 590
Score = 65.9 bits (33), Expect = 3e-009
Identities = 87/104 (83%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaa-gtgcataacagcgtcaaatgcattctc 1136
||||||| || ||||||||||| |||||||| |||||| ||||| ||||||||||| ||
Sbjct: 574 gtgctctngcccacataagcaacggcagcaaaagtgcatgacagcatcaaatgcattttc 515
Query: 1137 cgaaaatattttcttcacagctttggcatcgcctaagtcagcat 1180
| |||||| | || |||||||| |||||||||| |||||||
Sbjct: 514 tgcgaatattctgttaacagcttttgcatcgcctagatcagcat 471
>gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019L05f, mRNA sequence
Length = 618
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||||||| |||||| || || || ||||||
Sbjct: 396 gccttcttgcaagcttccacaaactccttcactgacctacctcttccggtgccaacattg 337
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 336 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 277
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| || ||||||||||| ||||| ||||||||
Sbjct: 276 tcggtaacatcgatgtaatctctcacgcaagt 245
>gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005D24f, mRNA sequence
Length = 1150
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||||||||||||||| |||||||| ||| ||| |||||| || || || ||||||
Sbjct: 311 gccttcttgcaagcttccacaaactctttcattgacctacctcttccggtgccaacattg 252
Query: 562 tagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctacaaga 621
|| || |||||||||||| || || || || ||||| ||||| |||||||| ||
Sbjct: 251 tatatgccaactttgcctctctccgccttgttgagcgctttcacgtgggcatctaccagg 192
Query: 622 tctgtgacatcgatgtagtctctaacgcaagt 653
|| |||||||||||||| ||||| ||||||||
Sbjct: 191 tcggtgacatcgatgtaatctctcacgcaagt 160
>gb|BU999595.1|BU999595 HI14P19r HI Hordeum vulgare subsp. vulgare cDNA clone HI14P19
5-PRIME, mRNA sequence
Length = 575
Score = 50.1 bits (25), Expect = 2e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcg 1167
|||||||| ||||| ||||||||||| || | |||||| | || |||||||| ||||||
Sbjct: 575 aagtgcatgacagcatcaaatgcattttctgcgaatattctgttaacagcttttgcatcg 516
Query: 1168 cctaagtcagcat 1180
|||| |||||||
Sbjct: 515 cctagatcagcat 503
>gb|BG300460.1|BG300460 HVSMEb0017C05f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0017C05f, mRNA sequence
Length = 871
Score = 42.1 bits (21), Expect = 0.042
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1108 aagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacag 1156
|||||||| ||||| ||||||||||| || | |||||| || |||||||
Sbjct: 605 aagtgcatcacagcatcaaatgcattttcaggaaatatcttgttcacag 557
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,149
Number of Sequences: 312970
Number of extensions: 104149
Number of successful extensions: 27811
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27710
Number of HSP's gapped (non-prelim): 84
length of query: 1214
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1195
effective length of database: 169,188,109
effective search space: 202179790255
effective search space used: 202179790255
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)