BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042337.2.1
(945 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. v... 176 9e-043
gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike... 119 2e-025
gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots... 96 3e-018
gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedl... 96 3e-018
gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. v... 88 6e-016
gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. v... 64 9e-009
gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots... 62 4e-008
gb|BG299631.1|BG299631 HVSMEa0021C22f Hordeum vulgare seedl... 44 0.008
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 44 0.008
gb|BQ471837.1|BQ471837 HV03K07r HV Hordeum vulgare subsp. v... 44 0.008
gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. v... 40 0.13
gb|AY735909.1| Hordeum vulgare subsp. vulgare clone hLN15-6... 40 0.13
gb|AY735919.1| Hordeum vulgare subsp. vulgare clone hLN15-5... 40 0.13
>gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. vulgare cDNA clone HS01N10
3-PRIME, mRNA sequence
Length = 504
Score = 176 bits (89), Expect = 9e-043
Identities = 224/269 (83%)
Strand = Plus / Plus
Query: 394 tcccagtcgaagcactggatcaacgtccccaggaccagccccagcgtccgcagcgcgagg 453
||||||||||||||||| | || | |||| || || | ||| | |||| ||||||| ||
Sbjct: 227 tcccagtcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagc 286
Query: 454 gcctctccggggcatttccgccttcccatcccgaacggcatcacgaacagcccgtcggca 513
||||| |||||||| |||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 287 gcctcgccggggcacctccgccgccccatcccgaacggcatcagcagcagcccgtcgccc 346
Query: 514 cggccgtcctcgaaccgctccggcctgaacgcggctgggtccgcccatatcgcggggtcc 573
||||||||||||||||||||||| |||||| | |||||| |||| |||| ||||||
Sbjct: 347 ttgccgtcctcgaaccgctccggccggaacgccgtcgggtcctcccacgtcgccgggtcc 406
Query: 574 ctgtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccg 633
||||||||||||||| |||| |||| ||||| || ||||||||||| || |||||||
Sbjct: 407 ctgtggatggcgtacgcgttcacgatcagcatggtgccgctcggcacgtcgtagccgccg 466
Query: 634 accgtgcagtcggcggtggactcgtgcgg 662
||| |||||||||||| ||||||||||||
Sbjct: 467 accttgcagtcggcggaggactcgtgcgg 495
>gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011O14f, mRNA sequence
Length = 813
Score = 119 bits (60), Expect = 2e-025
Identities = 223/276 (80%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 568 gggtccctgtggatggcgtacacgttgacgaggagc-atcgtcccgctcggcacacggtg 626
||||||||||||||||||||| |||| |||| ||| || ||||||||||||| ||
Sbjct: 465 gggtccctgtggatggcgtacgcgttcacgatcagccatggtcccgctcggcaagtcgta 406
Query: 627 gccgccgaccgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggta 686
|||||||||| |||||||||||| |||||||||||| | |||| |||| | |||||||
Sbjct: 405 gccgccgaccttgcagtcggcggaggactcgtgcggcagcagcagcggcgccgccgggta 346
Query: 687 cagccgcagggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggc 746
|| || || |||||| ||| |||||| |||||||||| |||||| |||| |||||||||
Sbjct: 345 catgcgtagcgtctcgttgatgatgcactggaggtagctgaggcggggcacgtcgtcggc 286
Query: 747 gccgagcagccgggagtgccccgcggacgcgtcaatctccgcctgcgctttctccagaac 806
| | | || |||||| ||| ||||||||| ||||| ||||| || |||| || |
Sbjct: 285 ggcaaccatgcgggaggtcccgatggacgcgtcgatctcggcctgggccttcttgagcgc 226
Query: 807 atcggggtggcttagcagcagcgacatcgcccattc 842
| |||||| | |||||||||||||||||||||||
Sbjct: 225 cgccgggtggttcagcagcagcgacatcgcccattc 190
>gb|AL500947.1|AL500947 AL500947 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20u 3', mRNA sequence
Length = 393
Score = 95.6 bits (48), Expect = 3e-018
Identities = 141/172 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| || | |||||||| ||||||||||| || |||||| ||
Sbjct: 378 gtggatggcgtacgcgttcaccatcagcatcgtgccgctcggcacgttgtagccgccaac 319
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||| || | |||| |||||| | |||| ||||| | ||||||||||||||||
Sbjct: 318 cttgcagtccgccgacgactggtgcggcagcagcatcggcgccgccgggtacagccgcag 259
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcg 747
|||||||| |||||||| || |||||| |||| || |||| ||||||||||
Sbjct: 258 cgtctcgctcacgatgcactgcaggtaggcgagccggggcacgtcgtcggcg 207
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 892 agagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
|||||| ||||||||||||| |||||||||||||| || | |||||||||
Sbjct: 62 agagccgtgatcatggtatcggtgtacacctccggctccgtcttctgcag 13
>gb|BF624750.2|BF624750 HVSMEa0017K07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K07f, mRNA sequence
Length = 763
Score = 95.6 bits (48), Expect = 3e-018
Identities = 141/172 (81%)
Strand = Plus / Minus
Query: 576 gtggatggcgtacacgttgacgaggagcatcgtcccgctcggcacacggtggccgccgac 635
||||||||||||| |||| || | |||||||| ||||||||||| || |||||| ||
Sbjct: 492 gtggatggcgtacgcgttcaccatcagcatcgtgccgctcggcacgttgtagccgccaac 433
Query: 636 cgtgcagtcggcggtggactcgtgcgggaccagcgtcggcacgaccgggtacagccgcag 695
| ||||||| || | |||| |||||| | |||| ||||| | ||||||||||||||||
Sbjct: 432 cttgcagtccgccgacgactggtgcggcagcagcatcggcgccgccgggtacagccgcag 373
Query: 696 ggtctcgctgacgatgcagtggaggtagccgaggcgcggcaggtcgtcggcg 747
|||||||| |||||||| || |||||| |||| || |||| ||||||||||
Sbjct: 372 cgtctcgctcacgatgcactgcaggtaggcgagccggggcacgtcgtcggcg 321
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 478 cccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgctccgg 536
|||||||||||||| |||| |||| |||| ||||| |||||||||||||||||||||
Sbjct: 590 cccatcccgaacgggatcatgaaccgcccctcggccttgccgtcctcgaaccgctccgg 532
Score = 58.0 bits (29), Expect = 6e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 893 gagccatgatcatggtatccgtgtacacctccggttctgacttctgcag 941
||||| ||||||||||||| |||||||||||||| || | |||||||||
Sbjct: 175 gagccgtgatcatggtatcggtgtacacctccggctccgtcttctgcag 127
>gb|BQ662532.1|BQ662532 HS02N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS02N10
3-PRIME, mRNA sequence
Length = 448
Score = 87.7 bits (44), Expect = 6e-016
Identities = 125/152 (82%)
Strand = Plus / Plus
Query: 394 tcccagtcgaagcactggatcaacgtccccaggaccagccccagcgtccgcagcgcgagg 453
||||||||||||||||| | || | |||| || || | ||| | |||| ||||||| ||
Sbjct: 271 tcccagtcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagc 330
Query: 454 gcctctccggggcatttccgccttcccatcccgaacggcatcacgaacagcccgtcggca 513
||||| |||||||| |||||| |||||||||||||| |||| | |||||||||| |
Sbjct: 331 gcctcgccggggcacctccgccgccccatcccgaacggtatcagcagcagcccgtcgccc 390
Query: 514 cggccgtcctcgaaccgctccggcctgaacgc 545
||||||||||||||||||||||| ||||||
Sbjct: 391 ttgccgtcctcgaaccgctccggccggaacgc 422
>gb|CA012717.1|CA012717 HT06D18r HT Hordeum vulgare subsp. vulgare cDNA clone HT06D18
5-PRIME, mRNA sequence
Length = 564
Score = 63.9 bits (32), Expect = 9e-009
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 393 gtcccagtcgaagcactggatcaacgtccccaggaccagccccagcgtccgcagcgcgag 452
|||||||||||||||||| | || ||| |||| |||| || | ||||||||||| ||
Sbjct: 178 gtcccagtcgaagcactgcaccagcgtggccagcaccatgccgatggtccgcagcgccag 119
Query: 453 ggcctctccggggcatttccgccttcccatcccgaacggcatcacgaacagcccgtcggc 512
| ||| |||||||| ||| | |||||||||||||| |||| |||| |||| |||||
Sbjct: 118 cgtctccccggggcaccgccggcggcccatcccgaacgggatcatgaaccgcccctcggc 59
Query: 513 acggccgtcctcgaaccgctccgg 536
|||||||||||||||||||||
Sbjct: 58 cttgccgtcctcgaaccgctccgg 35
>gb|AL503532.1|AL503532 AL503532 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H20T 5', mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 478 cccatcccgaacggcatcacgaacagcccgtcggcacggccgtcctcgaaccgctccgg 536
|||||||||||||| |||| |||| |||| ||||| |||||||||||||||||||||
Sbjct: 433 cccatcccgaacgggatcatgaaccgcccctcggccttgccgtcctcgaaccgctccgg 491
>gb|BG299631.1|BG299631 HVSMEa0021C22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021C22f, mRNA sequence
Length = 817
Score = 44.1 bits (22), Expect = 0.008
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgca 940
||||||| ||||| |||||||||||||| || | ||||||||
Sbjct: 401 tgatcatagtatcggtgtacacctccggctccgtcttctgca 360
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 522 ctcgaaccgctccggcctgaac 543
||||||||||||||||||||||
Sbjct: 422 ctcgaaccgctccggcctgaac 401
>gb|BQ471837.1|BQ471837 HV03K07r HV Hordeum vulgare subsp. vulgare cDNA clone HV03K07
5-PRIME, mRNA sequence
Length = 513
Score = 44.1 bits (22), Expect = 0.008
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 899 tgatcatggtatccgtgtacacctccggttctgacttctgca 940
||||||| ||||| |||||||||||||| || | ||||||||
Sbjct: 391 tgatcatagtatcggtgtacacctccggctccgtcttctgca 350
>gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05M12
3-PRIME, mRNA sequence
Length = 467
Score = 40.1 bits (20), Expect = 0.13
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 516 gccgtcctcgaaccgctccggcctgaac 543
|||||||||||||| ||||||| |||||
Sbjct: 293 gccgtcctcgaacctctccggcatgaac 320
>gb|AY735909.1| Hordeum vulgare subsp. vulgare clone hLN15-61-39.1B.42 cytochrome
P450 (CYP P450) gene, partial cds
Length = 87
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 519 gtcctcgaaccgctccggcctgaa 542
|||||| |||||||||||||||||
Sbjct: 27 gtcctcaaaccgctccggcctgaa 4
>gb|AY735919.1| Hordeum vulgare subsp. vulgare clone hLN15-55-40.1B.23B cytochrome
P450 (CYP P450) gene, partial cds
Length = 93
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 519 gtcctcgaaccgctccggcctgaa 542
|||||| |||||||||||||||||
Sbjct: 27 gtcctcaaaccgctccggcctgaa 4
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,168
Number of Sequences: 312970
Number of extensions: 115168
Number of successful extensions: 33025
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32988
Number of HSP's gapped (non-prelim): 33
length of query: 945
length of database: 175,134,539
effective HSP length: 19
effective length of query: 926
effective length of database: 169,188,109
effective search space: 156668188934
effective search space used: 156668188934
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)