BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ549577.1|BJ549577 BJ549577 K. Sato unpublished cDNA li... 500 e-140
gb|BE194414.2|BE194414 HVSMEh0085H15f Hordeum vulgare 5-45 ... 486 e-136
gb|BF264489.1|BF264489 HV_CEa0009I24f Hordeum vulgare seedl... 484 e-135
gb|BF265779.2|BF265779 HV_CEa0013F02f Hordeum vulgare seedl... 478 e-133
gb|BM817335.1|BM817335 HC105F07_T3.ab1 HC Hordeum vulgare s... 402 e-111
gb|BJ549352.1|BJ549352 BJ549352 K. Sato unpublished cDNA li... 402 e-111
gb|BQ762284.1|BQ762284 EBro01_SQ005_I10 _R root, 3 week, hy... 377 e-103
gb|CD663284.1|CD663284 UCRHV18_05aa05_b1 Drought-stressed D... 377 e-103
gb|BQ763675.1|BQ763675 EBro03_SQ005_I06_R root, 3 week, wat... 369 e-100
gb|BJ544676.1|BJ544676 BJ544676 K. Sato unpublished cDNA li... 367 e-100
gb|BJ546147.1|BJ546147 BJ546147 K. Sato unpublished cDNA li... 367 e-100
gb|BJ549745.1|BJ549745 BJ549745 K. Sato unpublished cDNA li... 363 8e-099
gb|BI948071.1|BI948071 HVSMEl0008B09f Hordeum vulgare spike... 361 3e-098
gb|AV915864.1|AV915864 AV915864 K. Sato unpublished cDNA li... 355 2e-096
gb|AV920978.1|AV920978 AV920978 K. Sato unpublished cDNA li... 353 8e-096
gb|BJ546855.1|BJ546855 BJ546855 K. Sato unpublished cDNA li... 353 8e-096
gb|BM443194.2|BM443194 EBro02_SQ003_A04_R root, 3 week, hyd... 349 1e-094
gb|AV929890.1|AV929890 AV929890 K. Sato unpublished cDNA li... 343 7e-093
gb|BJ547964.1|BJ547964 BJ547964 K. Sato unpublished cDNA li... 327 4e-088
gb|BJ550204.1|BJ550204 BJ550204 K. Sato unpublished cDNA li... 307 4e-082
gb|AV917857.1|AV917857 AV917857 K. Sato unpublished cDNA li... 299 1e-079
gb|BI955444.1|BI955444 HVSMEm0023C11f Hordeum vulgare green... 287 4e-076
gb|CD663432.1|CD663432 UCRHV18_05bh06_b1 Drought-stressed D... 278 4e-073
gb|AV931850.1|AV931850 AV931850 K. Sato unpublished cDNA li... 270 9e-071
gb|BI777295.2|BI777295 EBro03_SQ002_M10_R root, 3 week, wat... 262 2e-068
gb|CB876813.1|CB876813 HP02H22T HP Hordeum vulgare subsp. v... 246 1e-063
gb|AL500200.1|AL500200 AL500200 Hordeum vulgare Barke etiol... 242 2e-062
gb|AV913100.1|AV913100 AV913100 K. Sato unpublished cDNA li... 208 3e-052
gb|BJ548777.1|BJ548777 BJ548777 K. Sato unpublished cDNA li... 172 2e-041
gb|AV910139.1|AV910139 AV910139 K. Sato unpublished cDNA li... 157 9e-037
gb|AV912721.1|AV912721 AV912721 K. Sato unpublished cDNA li... 119 2e-025
gb|AL502460.1|AL502460 AL502460 Hordeum vulgare Barke roots... 100 2e-019
gb|AL502158.1|AL502158 AL502158 Hordeum vulgare Barke roots... 96 3e-018
gb|AV910579.1|AV910579 AV910579 K. Sato unpublished cDNA li... 94 1e-017
gb|AV920459.1|AV920459 AV920459 K. Sato unpublished cDNA li... 94 1e-017
gb|CD663623.1|CD663623 UCRHV18_06ae02_b1 Drought-stressed D... 94 1e-017
gb|BF264639.1|BF264639 HV_CEa0009P11f Hordeum vulgare seedl... 90 2e-016
gb|AV932209.1|AV932209 AV932209 K. Sato unpublished cDNA li... 80 2e-013
gb|AV932642.1|AV932642 AV932642 K. Sato unpublished cDNA li... 80 2e-013
gb|AV933129.1|AV933129 AV933129 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ472996.1|BJ472996 BJ472996 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ469617.1|BJ469617 BJ469617 K. Sato unpublished cDNA li... 72 4e-011
gb|AV932384.1|AV932384 AV932384 K. Sato unpublished cDNA li... 66 3e-009
gb|BF265531.3|BF265531 HV_CEa0012I06f Hordeum vulgare seedl... 62 4e-008
gb|AV921016.1|AV921016 AV921016 K. Sato unpublished cDNA li... 52 4e-005
gb|CA016410.1|CA016410 HV08M19u HV Hordeum vulgare subsp. v... 52 4e-005
gb|CB877156.1|CB877156 HP03M02T HP Hordeum vulgare subsp. v... 52 4e-005
gb|CB879806.1|CB879806 HP03M02w HP Hordeum vulgare subsp. v... 52 4e-005
gb|CB879901.1|CB879901 HP08M15T HP Hordeum vulgare subsp. v... 52 4e-005
gb|AL504181.1|AL504181 AL504181 Hordeum vulgare Barke roots... 42 0.038
gb|BI952915.1|BI952915 HVSMEm0008F20f Hordeum vulgare green... 42 0.038
gb|BF262701.2|BF262701 HV_CEa0004L08f Hordeum vulgare seedl... 42 0.038
gb|AV913005.1|AV913005 AV913005 K. Sato unpublished cDNA li... 42 0.038
gb|AV913783.1|AV913783 AV913783 K. Sato unpublished cDNA li... 42 0.038
gb|AV914299.1|AV914299 AV914299 K. Sato unpublished cDNA li... 42 0.038
gb|AV915153.1|AV915153 AV915153 K. Sato unpublished cDNA li... 42 0.038
gb|AV915598.1|AV915598 AV915598 K. Sato unpublished cDNA li... 42 0.038
gb|AV916493.1|AV916493 AV916493 K. Sato unpublished cDNA li... 42 0.038
gb|AV916575.1|AV916575 AV916575 K. Sato unpublished cDNA li... 42 0.038
gb|AV917344.1|AV917344 AV917344 K. Sato unpublished cDNA li... 42 0.038
gb|AV933130.1|AV933130 AV933130 K. Sato unpublished cDNA li... 42 0.038
gb|BM816374.1|BM816374 HB107C09_SK.ab1 HB Hordeum vulgare s... 42 0.038
gb|BQ458477.1|BQ458477 HA05B17r HA Hordeum vulgare subsp. v... 42 0.038
gb|BQ458831.1|BQ458831 HA04B09r HA Hordeum vulgare subsp. v... 42 0.038
gb|BQ458938.1|BQ458938 HA02M18r HA Hordeum vulgare subsp. v... 42 0.038
gb|BQ459855.1|BQ459855 HA07N23r HA Hordeum vulgare subsp. v... 42 0.038
gb|BQ469013.1|BQ469013 HM03B19r HM Hordeum vulgare subsp. v... 42 0.038
gb|BQ469109.1|BQ469109 HM03G18r HM Hordeum vulgare subsp. v... 42 0.038
gb|BQ469764.1|BQ469764 HZ01M23r HZ Hordeum vulgare subsp. v... 42 0.038
gb|BM098005.2|BM098005 EBpi03_SQ002_E14_R pistil, 4 DPA, no... 42 0.038
gb|BM098140.2|BM098140 EBpi03_SQ002_K16_R pistil, 4 DPA, no... 42 0.038
gb|BM098853.2|BM098853 EBpi05_SQ002_E03_R pistil, 8 DPA, no... 42 0.038
gb|BQ754642.1|BQ754642 EBed01_SQ003_G09_R endosperm, 6 DPA,... 42 0.038
gb|BU976776.1|BU976776 HA10E18r HA Hordeum vulgare subsp. v... 42 0.038
gb|BU981498.1|BU981498 HA23M24r HA Hordeum vulgare subsp. v... 42 0.038
gb|BU990358.1|BU990358 HF24M19r HF Hordeum vulgare subsp. v... 42 0.038
gb|CA017920.1|CA017920 HV06M18r HV Hordeum vulgare subsp. v... 42 0.038
gb|BJ549145.1|BJ549145 BJ549145 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549268.1|BJ549268 BJ549268 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549269.1|BJ549269 BJ549269 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549290.1|BJ549290 BJ549290 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549338.1|BJ549338 BJ549338 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549341.1|BJ549341 BJ549341 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549470.1|BJ549470 BJ549470 K. Sato unpublished cDNA li... 42 0.038
gb|BJ549593.1|BJ549593 BJ549593 K. Sato unpublished cDNA li... 42 0.038
gb|CK122717.1|CK122717 BES1824105i24 BES1824 Hordeum vulgar... 42 0.038
gb|CK124596.1|CK124596 BES1824109l18 BES1824 Hordeum vulgar... 42 0.038
gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mR... 42 0.038
gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mR... 42 0.038
gb|BF265506.3|BF265506 HV_CEa0012H17f Hordeum vulgare seedl... 40 0.15
gb|AV912318.1|AV912318 AV912318 K. Sato unpublished cDNA li... 40 0.15
gb|AV918125.1|AV918125 AV918125 K. Sato unpublished cDNA li... 40 0.15
gb|AV925587.1|AV925587 AV925587 K. Sato unpublished cDNA li... 40 0.15
gb|AV930728.1|AV930728 AV930728 K. Sato unpublished cDNA li... 40 0.15
gb|BQ464289.1|BQ464289 HF01N21T HF Hordeum vulgare subsp. v... 40 0.15
gb|BQ659835.1|BQ659835 HF01N21w HF Hordeum vulgare subsp. v... 40 0.15
>gb|BJ549577.1|BJ549577 BJ549577 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39h15 5', mRNA sequence
Length = 619
Score = 500 bits (252), Expect = e-140
Identities = 450/516 (87%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 76 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 135
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 136 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 195
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 196 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 255
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 256 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 315
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 316 cctaactacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgat 375
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 435
Query: 381 gctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggtt 440
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||||
Sbjct: 436 gccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggtt 495
Query: 441 gttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaa 500
| || ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 496 gccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaa 555
Query: 501 aaggagaggaaagctagggaggatagggaaggtcaa 536
||||||||||||||||| || |||| ||||| ||||
Sbjct: 556 aaggagaggaaagctagagaagataaggaagctcaa 591
>gb|BE194414.2|BE194414 HVSMEh0085H15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085H15f, mRNA sequence
Length = 864
Score = 486 bits (245), Expect = e-136
Identities = 434/497 (87%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 12 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 71
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 72 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 131
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 132 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 191
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 192 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 251
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 252 cctaactacaagggtaaatggaagatcccatggattgataatccaaagtttgaggatgat 311
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 371
Query: 381 gctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggtt 440
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||||
Sbjct: 372 gccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggtt 431
Query: 441 gttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaa 500
| || ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 432 gccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaa 491
Query: 501 aaggagaggaaagctag 517
|||||||||||||||||
Sbjct: 492 aaggagaggaaagctag 508
>gb|BF264489.1|BF264489 HV_CEa0009I24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I24f, mRNA sequence
Length = 887
Score = 484 bits (244), Expect = e-135
Identities = 442/508 (87%)
Strand = Plus / Plus
Query: 29 taaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaatatattga 88
|||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1 taaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagagtatattga 60
Query: 89 agatcctgatgaagttaagccagagggctatgattctatcccaaaacagattcctgatcc 148
||||| |||| ||||| || ||||||||||||||||| |||| | |||||||||| ||
Sbjct: 61 ggatcccgatgcggttaaacctgagggctatgattctattccaagagagattcctgaccc 120
Query: 149 gaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaagcccagaat 208
||||| || ||||| ||||| ||||| || ||||| ||||| |||||||| || || |
Sbjct: 121 aaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaacctaggag 180
Query: 209 ggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaacta 268
| || | |||||||||||||| |||| ||||| ||||||| |||||| || ||||||||
Sbjct: 181 gataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaacta 240
Query: 269 caagggtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatct 328
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 241 caagggtaaatggaagatcccatggattgataatccagagtttgaggatgatccagattt 300
Query: 329 ttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttc 388
||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 atatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttc 360
Query: 389 agttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgagga 448
||||| |||||||| || ||||| |||||||| || ||||||| | |||||| || ||
Sbjct: 361 tgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatga 420
Query: 449 aacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagag 508
||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 421 aacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagag 480
Query: 509 gaaagctagggaggatagggaaggtcaa 536
||||||||| || |||| ||||| ||||
Sbjct: 481 gaaagctagagaagataaggaagctcaa 508
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 600 acagggatcactgggatgactaccatgatgagct 633
>gb|BF265779.2|BF265779 HV_CEa0013F02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013F02f, mRNA sequence
Length = 532
Score = 478 bits (241), Expect = e-133
Identities = 447/516 (86%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 11 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 70
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 71 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 130
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 131 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 190
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 191 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 250
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 251 cctaactacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgat 310
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 370
Query: 381 gctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggtt 440
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||||
Sbjct: 371 gccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggtt 430
Query: 441 gttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaa 500
| || ||||| ||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct: 431 gccgatgaaacgtggggtgcaaataaggaggctgaaaaggagggctttgaagaagctgaa 490
Query: 501 aaggagaggaaagctagggaggatagggaaggtcaa 536
|||||||||||||||| || |||| ||||| ||||
Sbjct: 491 naggagaggaaagctagagaagataaggaagctcaa 526
>gb|BM817335.1|BM817335 HC105F07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F07_T3.ab1 similar to CALRETICULIN 1 PRECURSOR
gi|2052379|gb|AAC49695.1| (U66343) calreticulin
[Arabidopsis thaliana], mRNA sequence
Length = 932
Score = 402 bits (203), Expect = e-111
Identities = 424/496 (85%), Gaps = 2/496 (0%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 349 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 408
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 409 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 468
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 469 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 528
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 529 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 588
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 589 cctaactacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgat 648
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 649 ccagatttatatgtactgaaacctctgaagtatattggaattgaaagttggcaggtaaaa 708
Query: 381 g-ctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggt 439
| | ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||
Sbjct: 709 gccgggttctgtttttgacaacatcctcatttgcgatgaccccgaatatgcaaaacaggn 768
Query: 440 tgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctga 499
|| || ||||| ||||||||||||| |||||||| |||||| | |||||| ||||||
Sbjct: 769 tgccgatgaaacgtggggtgcaaataaggaggctgnaaaggagggctttgaaaaagctg- 827
Query: 500 aaaggagaggaaagct 515
|||||| |||||||||
Sbjct: 828 aaagganaggaaagct 843
>gb|BJ549352.1|BJ549352 BJ549352 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31d11 5', mRNA sequence
Length = 472
Score = 402 bits (203), Expect = e-111
Identities = 383/443 (86%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 30 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 89
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 90 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 149
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 150 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 209
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 210 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 269
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 270 cctaactacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgat 329
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 330 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 389
Query: 381 gctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggtt 440
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||||
Sbjct: 390 gccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggtt 449
Query: 441 gttgaggaaacttggggtgcaaa 463
| || ||||| |||||||||||
Sbjct: 450 gccgatgaaacgtggggtgcaaa 472
>gb|BQ762284.1|BQ762284 EBro01_SQ005_I10 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_I10 5', mRNA sequence
Length = 589
Score = 377 bits (190), Expect = e-103
Identities = 331/378 (87%)
Strand = Plus / Plus
Query: 159 aagcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaat 218
||||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | |||
Sbjct: 15 aagcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaat 74
Query: 219 ccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaa 278
||||||||||| |||| ||||| ||||||| |||||| || ||||||||||||||||||
Sbjct: 75 ccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggtaaa 134
Query: 279 tggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgctg 338
||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 135 tggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgtactg 194
Query: 339 aagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgac 398
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 195 aaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttttgac 254
Query: 399 aacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggt 458
||||| || ||||| |||||||| || ||||||| | |||||| || ||||| ||||||
Sbjct: 255 aacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggt 314
Query: 459 gcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagg 518
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 315 gcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctaga 374
Query: 519 gaggatagggaaggtcaa 536
|| |||| ||||| ||||
Sbjct: 375 gaagataaggaagctcaa 392
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 484 acagggatcactgggatgactaccatgatgagct 517
>gb|CD663284.1|CD663284 UCRHV18_05aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05aa05, mRNA sequence
Length = 826
Score = 377 bits (190), Expect = e-103
Identities = 331/378 (87%)
Strand = Plus / Minus
Query: 159 aagcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaat 218
||||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | |||
Sbjct: 824 aagcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaat 765
Query: 219 ccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaa 278
||||||||||| |||| ||||| ||||||| |||||| || ||||||||||||||||||
Sbjct: 764 ccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggtaaa 705
Query: 279 tggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgctg 338
||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 704 tggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgtactg 645
Query: 339 aagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgac 398
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 644 aaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttttgac 585
Query: 399 aacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggt 458
||||| || ||||| |||||||| || ||||||| | |||||| || ||||| ||||||
Sbjct: 584 aacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggt 525
Query: 459 gcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagg 518
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 524 gcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctaga 465
Query: 519 gaggatagggaaggtcaa 536
|| |||| ||||| ||||
Sbjct: 464 gaagataaggaagctcaa 447
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 355 acagggatcactgggatgactaccatgatgagct 322
>gb|BQ763675.1|BQ763675 EBro03_SQ005_I06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_I06 5', mRNA sequence
Length = 623
Score = 369 bits (186), Expect = e-100
Identities = 321/366 (87%)
Strand = Plus / Plus
Query: 171 tgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatccagcatacaag 230
||||| || ||||| ||||| |||||||| || || | | || | ||||||||||||||
Sbjct: 2 tgggacgatgatgatgatggcatatggaaacctaggaggataccgaatccagcatacaaa 61
Query: 231 ggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaagacccca 290
|||| ||||| ||||||| |||||| || ||||||||||||||||||||||||| ||||
Sbjct: 62 ggacaatggaagcgcaagaaaattaagaaccctaactacaagggtaaatggaagatccca 121
Query: 291 tggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaag 350
||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||
Sbjct: 122 tggattgataatccagagtttgaggatgatccagatttatatgtactgaaacctctgaag 181
Query: 351 tatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatt 410
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct: 182 tatattggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatt 241
Query: 411 tgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggag 470
|| |||||||| || ||||||| | |||||| || ||||| ||||||||||||| ||||
Sbjct: 242 tgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggag 301
Query: 471 gctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaa 530
||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 302 gctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaa 361
Query: 531 ggtcaa 536
| ||||
Sbjct: 362 gctcaa 367
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 459 acagggatcactgggatgactaccatgatgagct 492
>gb|BJ544676.1|BJ544676 BJ544676 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34d02 5', mRNA sequence
Length = 698
Score = 367 bits (185), Expect = e-100
Identities = 287/321 (89%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
|||||||||||||| |||| ||||| ||||||| |||||| || |||||||||||||||
Sbjct: 34 aatccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggt 93
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|||||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct: 94 aaatggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgta 153
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 154 ctgaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgttttt 213
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
|||||||| || ||||| |||||||| || ||||||| | |||||| || ||||| |||
Sbjct: 214 gacaacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtgg 273
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagct 515
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 274 ggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagct 333
Query: 516 agggaggatagggaaggtcaa 536
|| || |||| ||||| ||||
Sbjct: 334 agagaagataaggaagctcaa 354
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 446 acagggatcactgggatgactaccatgatgagct 479
>gb|BJ546147.1|BJ546147 BJ546147 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34d02 3', mRNA sequence
Length = 714
Score = 367 bits (185), Expect = e-100
Identities = 287/321 (89%)
Strand = Plus / Minus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
|||||||||||||| |||| ||||| ||||||| |||||| || |||||||||||||||
Sbjct: 713 aatccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggt 654
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|||||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct: 653 aaatggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgta 594
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 593 ctgaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgttttt 534
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
|||||||| || ||||| |||||||| || ||||||| | |||||| || ||||| |||
Sbjct: 533 gacaacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtgg 474
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagct 515
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 473 ggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagct 414
Query: 516 agggaggatagggaaggtcaa 536
|| || |||| ||||| ||||
Sbjct: 413 agagaagataaggaagctcaa 393
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 301 acagggatcactgggatgactaccatgatgagct 268
>gb|BJ549745.1|BJ549745 BJ549745 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31d11 3', mRNA sequence
Length = 737
Score = 363 bits (183), Expect = 8e-099
Identities = 285/319 (89%)
Strand = Plus / Minus
Query: 218 tccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaa 277
|||||||||||| |||| ||||| ||||||| |||||| || |||||||||||||||||
Sbjct: 737 tccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggtaa 678
Query: 278 atggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgct 337
|||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 677 atggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgtact 618
Query: 338 gaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcga 397
||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 617 gaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttttga 558
Query: 398 caacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgggg 457
|||||| || ||||| |||||||| || ||||||| | |||||| || ||||| |||||
Sbjct: 557 caacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtgggg 498
Query: 458 tgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctag 517
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctag 438
Query: 518 ggaggatagggaaggtcaa 536
|| |||| ||||| ||||
Sbjct: 437 agaagataaggaagctcaa 419
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 327 acagggatcactgggatgactaccatgatgagct 294
>gb|BI948071.1|BI948071 HVSMEl0008B09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008B09f, mRNA sequence
Length = 559
Score = 361 bits (182), Expect = 3e-098
Identities = 320/366 (87%)
Strand = Plus / Plus
Query: 171 tgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatccagcatacaag 230
||||| || ||||| ||||| |||||||| || || | | || | ||||||||||||||
Sbjct: 28 tgggacgatgatgatgatggcatatggaaacctaggaggataccgaatccagcatacaaa 87
Query: 231 ggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaagacccca 290
|||| ||||| |||| || |||||| || ||||||||||||||||||||||||| ||||
Sbjct: 88 ggacaatggaagcgcacgaaaattaagaaccctaactacaagggtaaatggaagatccca 147
Query: 291 tggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaag 350
||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||
Sbjct: 148 tggattgataatccagagtttgaggatgatccagatttatatgtactgaaacctctgaag 207
Query: 351 tatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatt 410
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct: 208 tatattggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatt 267
Query: 411 tgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggag 470
|| |||||||| || ||||||| | |||||| || ||||| ||||||||||||| ||||
Sbjct: 268 tgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggag 327
Query: 471 gctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaa 530
||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 328 gctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaa 387
Query: 531 ggtcaa 536
| ||||
Sbjct: 388 gctcaa 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatga 622
|||| ||||||||||| ||||||||||||||
Sbjct: 485 acagggatcactgggatgactaccatgatga 515
>gb|AV915864.1|AV915864 AV915864 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16f08 5', mRNA sequence
Length = 604
Score = 355 bits (179), Expect = 2e-096
Identities = 281/315 (89%)
Strand = Plus / Plus
Query: 222 gcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatgg 281
|||||||| |||| ||||| ||||||| |||||| || |||||||||||||||||||||
Sbjct: 1 gcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaagggtaaatgg 60
Query: 282 aagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaag 341
|||| ||||||||| |||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 61 aagatcccatggattgataatccagagtttgaggatgatccagatttatatgtactgaaa 120
Query: 342 cctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaac 401
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 121 cctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttttgacaac 180
Query: 402 attctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggtgca 461
|| || ||||| |||||||| || ||||||| | |||||| || ||||| |||||||||
Sbjct: 181 atcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggtgca 240
Query: 462 aatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggag 521
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 aataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaa 300
Query: 522 gatagggaaggtcaa 536
|||| ||||| ||||
Sbjct: 301 gataaggaagctcaa 315
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 407 acagggatcactgggatgactaccatgatgagct 440
>gb|AV920978.1|AV920978 AV920978 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16f08 3', mRNA sequence
Length = 737
Score = 353 bits (178), Expect = 8e-096
Identities = 287/322 (89%), Gaps = 1/322 (0%)
Strand = Plus / Minus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaa-ggg 274
|||||||||||||| |||| ||||| ||||||| |||||| || ||||||||||| |||
Sbjct: 735 aatccagcatacaaaggacaatggaagcgcaagaaaattaagaaccctaactacaaaggg 676
Query: 275 taaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgt 334
||||||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct: 675 taaatggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgt 616
Query: 335 gctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagtttt 394
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 615 actgaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttt 556
Query: 395 cgacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttg 454
|||||||| || ||||| |||||||| || ||||||| | |||||| || ||||| ||
Sbjct: 555 tgacaacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtg 496
Query: 455 gggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagc 514
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 495 gggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagc 436
Query: 515 tagggaggatagggaaggtcaa 536
||| || |||| ||||| ||||
Sbjct: 435 tagagaagataaggaagctcaa 414
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 322 acagggatcactgggatgactaccatgatgagct 289
>gb|BJ546855.1|BJ546855 BJ546855 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12k16 5', mRNA sequence
Length = 560
Score = 353 bits (178), Expect = 8e-096
Identities = 316/362 (87%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 197 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 256
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 257 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 316
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 317 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 376
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 377 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 436
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 437 cctaactacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgat 496
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 556
Query: 381 gc 382
||
Sbjct: 557 gc 558
>gb|BM443194.2|BM443194 EBro02_SQ003_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_A04 5', mRNA sequence
Length = 424
Score = 349 bits (176), Expect = 1e-094
Identities = 269/300 (89%)
Strand = Plus / Plus
Query: 237 tggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatc 296
||||| ||||||| |||||| || ||||||||||||||||||||||||| |||||||||
Sbjct: 7 tggaagcgcaagaaaattaagaaccctaactacaagggtaaatggaagatcccatggatt 66
Query: 297 gataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatatt 356
|||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||
Sbjct: 67 gataatccagagtttgaggatgatccagatttatatgtactgaaacctctgaagtatatt 126
Query: 357 ggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgat 416
|||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||
Sbjct: 127 ggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgat 186
Query: 417 gaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaa 476
||||| || ||||||| | |||||| || ||||| ||||||||||||| ||||||||||
Sbjct: 187 gacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaa 246
Query: 477 aaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
||||| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 247 aaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 306
>gb|AV929890.1|AV929890 AV929890 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16p21 3', mRNA sequence
Length = 701
Score = 343 bits (173), Expect = 7e-093
Identities = 268/300 (89%)
Strand = Plus / Minus
Query: 237 tggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatc 296
||||| ||||||| |||||| || |||||||||||||||||||| |||| |||||||||
Sbjct: 701 tggaagcgcaagaaaattaagaaccctaactacaagggtaaatgnaagatcccatggatt 642
Query: 297 gataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatatt 356
|||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||
Sbjct: 641 gataatccagagtttgaggatgatccagatttatatgtactgaaacctctgaagtatatt 582
Query: 357 ggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgat 416
|||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||
Sbjct: 581 ggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgat 522
Query: 417 gaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaa 476
||||| || ||||||| | |||||| || ||||| ||||||||||||| ||||||||||
Sbjct: 521 gacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaa 462
Query: 477 aaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
||||| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 461 aaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 402
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 310 acagggatcactgggatgactaccatgatgagct 277
>gb|BJ547964.1|BJ547964 BJ547964 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12k16 3', mRNA sequence
Length = 676
Score = 327 bits (165), Expect = 4e-088
Identities = 248/276 (89%)
Strand = Plus / Minus
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgat 320
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 668 cctaactacaagggtaaatgnaagatcccatggattgataatccagagtttgaggatgat 609
Query: 321 ccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaa 380
|||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 608 ccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaaa 549
Query: 381 gctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggtt 440
|| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | |||||
Sbjct: 548 gccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggtt 489
Query: 441 gttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaa 500
| || ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 488 gccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaa 429
Query: 501 aaggagaggaaagctagggaggatagggaaggtcaa 536
||||||||||||||||| || |||| ||||| ||||
Sbjct: 428 aaggagaggaaagctagagaagataaggaagctcaa 393
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 301 acagggatcactgggatgactaccatgatgagct 268
>gb|BJ550204.1|BJ550204 BJ550204 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39h15 3', mRNA sequence
Length = 696
Score = 307 bits (155), Expect = 4e-082
Identities = 247/277 (89%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 261 cctaactacaaggg-taaatggaagaccccatggatcgataatccagagtttgaggatga 319
||||||| |||||| |||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct: 694 cctaactncaaggggtaaatgnaagatcccatggattgataatccagagtttgaggatga 635
Query: 320 tccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaa 379
||||||| | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 634 tccagatttatatgtactgaaacctctgaagtatattggaattgaagtttggcaggtaaa 575
Query: 380 agctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggt 439
||| ||||| ||||| |||||||| || ||||| |||||||| || ||||||| | ||||
Sbjct: 574 agccggttctgtttttgacaacatcctcatttgcgatgacccggaatatgcaaaacaggt 515
Query: 440 tgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctga 499
|| || ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 514 tgccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctga 455
Query: 500 aaaggagaggaaagctagggaggatagggaaggtcaa 536
|||||||||||||||||| || |||| ||||| ||||
Sbjct: 454 aaaggagaggaaagctagagaagataaggaagctcaa 418
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 326 acagggatcactgggatgactaccatgatgagct 293
>gb|AV917857.1|AV917857 AV917857 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11n08 3', mRNA sequence
Length = 650
Score = 299 bits (151), Expect = 1e-079
Identities = 232/259 (89%)
Strand = Plus / Minus
Query: 278 atggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgct 337
|||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 650 atggaagatcccatggattgataatccagagtttgaggatgatccagatttatatgtact 591
Query: 338 gaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcga 397
||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 590 gaaacctctgaagtatattggaattgaagtttggcaggtaaaagccggttctgtttttga 531
Query: 398 caacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgggg 457
|||||| || ||||| |||||||| || ||||||| | |||||| || ||||| |||||
Sbjct: 530 caacatcctcatttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtgggg 471
Query: 458 tgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctag 517
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 470 tgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctag 411
Query: 518 ggaggatagggaaggtcaa 536
|| |||| ||||| ||||
Sbjct: 410 agaagataaggaagctcaa 392
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 300 acagggatcactgggatgactaccatgatgagct 267
>gb|BI955444.1|BI955444 HVSMEm0023C11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023C11f, mRNA sequence
Length = 668
Score = 287 bits (145), Expect = 4e-076
Identities = 262/301 (87%)
Strand = Plus / Plus
Query: 216 aatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggt 275
|||||||||||| ||||| ||||| ||||||| |||||| || |||| ||||||||||
Sbjct: 26 aatccagcatacggaggaccatggaagcgcaagaaaattaataaccctatctacaagggt 85
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|||||||||| ||||||||| ||||||||| ||||||||||||||||| || | |||||
Sbjct: 86 aaatggaagatcccatggattgataatccaaagtttgaggatgatccatatttatatgta 145
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
||||| ||| ||||||||||||||||||||||||||| ||| ||||| ||||| |||||
Sbjct: 146 ctgaaacctctgaagtatattggaattgaagtttggcgggttaaagccggttctgttttt 205
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
|||||||| || ||||| |||||||| || ||||||| | | |||| | ||||| |||
Sbjct: 206 gacaacatcctcatttgcgatgacccggaatatgcaaaacacgttgcccatgaaacgtgg 265
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagct 515
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 ggtgcaaataatgaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagct 325
Query: 516 a 516
|
Sbjct: 326 a 326
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 438 acagggatcactgggatgactaccatgatgagct 471
>gb|CD663432.1|CD663432 UCRHV18_05bh06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05bh06, mRNA sequence
Length = 590
Score = 278 bits (140), Expect = 4e-073
Identities = 215/240 (89%)
Strand = Plus / Minus
Query: 297 gataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatatt 356
|||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||
Sbjct: 588 gataatccagagtttgaggatgatccagatttatatgtactgaaacctctgaagtatatt 529
Query: 357 ggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgat 416
|||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||
Sbjct: 528 ggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgat 469
Query: 417 gaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaa 476
||||| || ||||||| | |||||| || ||||| ||||||||||||| ||||||||||
Sbjct: 468 gacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaa 409
Query: 477 aaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
||||| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 408 aaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 349
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 257 acagggatcactgggatgactaccatgatgagct 224
>gb|AV931850.1|AV931850 AV931850 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26g24 3', mRNA sequence
Length = 645
Score = 270 bits (136), Expect = 9e-071
Identities = 211/236 (89%)
Strand = Plus / Minus
Query: 301 atccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaa 360
|||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||||||
Sbjct: 645 atccagagtttgaggatgatccagatttatatgtactgaaacctctgaagtatattggaa 586
Query: 361 ttgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgacc 420
|||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||||
Sbjct: 585 ttgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgacc 526
Query: 421 ctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaagg 480
| || ||||||| | |||||| || ||||| ||||||||||||| ||||||||||||||
Sbjct: 525 cggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaagg 466
Query: 481 aagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 465 aggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 410
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 318 acagggatcactgggatgactaccatgatgagct 285
>gb|BI777295.2|BI777295 EBro03_SQ002_M10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M10 5', mRNA sequence
Length = 390
Score = 262 bits (132), Expect = 2e-068
Identities = 219/248 (88%)
Strand = Plus / Plus
Query: 289 catggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcctttga 348
||||||| ||||||||||||| || |||||||||||| | ||||| ||||| ||| |||
Sbjct: 10 catggattgataatccagagtccgacgatgatccagatttatatgtactgaaacctctga 69
Query: 349 agtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctga 408
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |
Sbjct: 70 agtatattggaattgaagtttggcaggtaaaagccggttctgtttttgacaacatcctca 129
Query: 409 tttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaataggg 468
|||| |||||||| || ||||||| | |||||| || ||||| ||||||||||||| ||
Sbjct: 130 tttgcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataagg 189
Query: 469 aggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggataggg 528
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 190 aggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataagg 249
Query: 529 aaggtcaa 536
||| ||||
Sbjct: 250 aagctcaa 257
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 349 acagggatcactgggatgactaccatgatgagct 382
>gb|CB876813.1|CB876813 HP02H22T HP Hordeum vulgare subsp. vulgare cDNA clone HP02H22
5-PRIME, mRNA sequence
Length = 508
Score = 246 bits (124), Expect = 1e-063
Identities = 247/288 (85%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 221 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 280
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 281 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 340
Query: 141 cctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaag 200
||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 341 cctgacccaaaggataagaagcccgacacgtgggacgatgatgatgatggcatatggaaa 400
Query: 201 cccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaat 260
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 401 cctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaac 460
Query: 261 cctaactacaagggtaaatggaagaccccatggatcgataatccagag 308
||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 461 cctaactacaagggtaaatggaagatcccatggattgataatccagag 508
>gb|AL500200.1|AL500200 AL500200 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05G12r 3', mRNA sequence
Length = 687
Score = 242 bits (122), Expect = 2e-062
Identities = 216/245 (88%), Gaps = 2/245 (0%)
Strand = Plus / Minus
Query: 292 ggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagt 351
|||| |||||||||||||||||| ||||||||||| | ||||| ||||| | | ||||||
Sbjct: 687 ggattgataatccagagtttgag-atgatccagatttatatgtactgaaacntctgaagt 629
Query: 352 atattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgattt 411
||||||||||||||||||||||||||||||| ||||| ||||| | |||||| || ||||
Sbjct: 628 atattggaattgaagtttggcaggtaaaagccggttctgtttttg-caacatcctcattt 570
Query: 412 gtgatgaccctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggagg 471
| |||||||| || ||||||| | |||||| || ||||| ||||||||||||| |||||
Sbjct: 569 gcgatgacccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggagg 510
Query: 472 ctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaag 531
|||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct: 509 ctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaag 450
Query: 532 gtcaa 536
||||
Sbjct: 449 ctcaa 445
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 353 acagggatcactgggatgactaccatgatgagct 320
>gb|AV913100.1|AV913100 AV913100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11n08 5', mRNA sequence
Length = 580
Score = 208 bits (105), Expect = 3e-052
Identities = 238/281 (84%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 300 cctcctcgtaaaatcaaggatgttggtgccaaaaagcctaaggattgggatgacagagag 359
Query: 81 tatattgaagatcctgatgaagttaagccagagggctatgattctatcccaaaacagatt 140
|||||||| ||||| |||| ||||| || ||||||||||||||||| |||| | |||||
Sbjct: 360 tatattgaggatcccgatgcggttaaacctgagggctatgattctattccaagagagatt 419
Query: 141 cctgatccgaaggacaaaaag-cctgacacatgggatgaagatgaggatggaatatggaa 199
||||| || ||||| || ||| || ||||| ||||| || ||||| ||||| ||||||||
Sbjct: 420 cctgacccaaaggataagaagcccggacacgtgggacgatgatgatgatggcatatggaa 479
Query: 200 gcccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaa 259
|| || | | || | |||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct: 480 acctaggaggataccgaatccagcatacaaaggacaatggaagcgcaagaaaattaagaa 539
Query: 260 tcctaactacaagggtaaatggaagaccccatggatcgata 300
||||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 540 ccctaactccaagggtaaatggaagatcccatggattgata 580
>gb|BJ548777.1|BJ548777 BJ548777 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35i04 3', mRNA sequence
Length = 484
Score = 172 bits (87), Expect = 2e-041
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 370 ggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtatg 429
||||||||||||| ||||| ||||| |||||||| || ||||| |||||||| || ||||
Sbjct: 484 ggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgacccggaatatg 425
Query: 430 caagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttg 489
||| | |||||| || ||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct: 424 caaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttg 365
Query: 490 aagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
|||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 364 aagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 318
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 226 acagggatcactgggatgactaccatgatgagct 193
>gb|AV910139.1|AV910139 AV910139 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3e19 5', mRNA sequence
Length = 300
Score = 157 bits (79), Expect = 9e-037
Identities = 145/168 (86%)
Strand = Plus / Plus
Query: 369 tggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtat 428
||||||||||| || ||||| ||||| ||||||| || ||||| |||||||| || |||
Sbjct: 1 tggcaggtaaangccggttctgtttttgacaacancctcatttgcgatgacccggaatat 60
Query: 429 gcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagctttt 488
|||| | |||||| || ||||| ||||||||||||| |||||||||||||| ||||||
Sbjct: 61 gcaaaacaggttgccgatgaaacgtggggtgcaaataangaggctgaaaaggaggctttt 120
Query: 489 gaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaa 536
||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct: 121 gaagaagctgaaaaggagaggaaagctagagaagataaggaagctcaa 168
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 260 acagggatcactgggatgactaccatgatgagct 293
>gb|AV912721.1|AV912721 AV912721 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4p20 3', mRNA sequence
Length = 414
Score = 119 bits (60), Expect = 2e-025
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 453 tggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaa 512
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 412 tggggtgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaa 353
Query: 513 gctagggaggatagggaaggtcaa 536
||||| || |||| ||||| ||||
Sbjct: 352 gctagagaagataaggaagctcaa 329
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 237 acagggatcactgggatgactaccatgatgagct 204
>gb|AL502460.1|AL502460 AL502460 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07K13u 3', mRNA sequence
Length = 649
Score = 99.6 bits (50), Expect = 2e-019
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 447 gaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagc-tgaaaagga 505
||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct: 549 gaaacgtggggtgcaaataaggaggctgaaaaggaggcttttgaagaagcttgaaaagga 490
Query: 506 gaggaaagct 515
||||||||||
Sbjct: 489 gaggaaagct 480
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 366 acagggatcactgggatgactaccatgatgagct 333
>gb|AL502158.1|AL502158 AL502158 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06K16u 3', mRNA sequence
Length = 545
Score = 95.6 bits (48), Expect = 3e-018
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 447 gaaacttggggtgcaaa-tagggagg-ctgaaaaggaagcttttgaagaagctgaaaagg 504
||||| ||||||||||| || ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 535 gaaacgtggggtgcaaaataaggagggctgaaaaggaggcttttgaagaagctgaaaagg 476
Query: 505 agaggaaagctagggaggatagggaaggtcaa 536
||||||||||||| || |||| ||||| ||||
Sbjct: 475 agaggaaagctagagaagataaggaagctcaa 444
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 352 acagggatcactgggatgactaccatgatgagct 319
>gb|AV910579.1|AV910579 AV910579 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4p20 5', mRNA sequence
Length = 510
Score = 93.7 bits (47), Expect = 1e-017
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 458 tgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctag 517
|||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaaataaggaggctgaaa-ggaggcttttgaagaagctgaaaaggagaggaaagctag 59
Query: 518 ggaggatagggaaggtcaa 536
|| |||| ||||| ||||
Sbjct: 60 agaagataaggaagctcaa 78
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 170 acagggatcactgggatgactaccatgatgagct 203
>gb|AV920459.1|AV920459 AV920459 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14c03 3', mRNA sequence
Length = 83
Score = 93.7 bits (47), Expect = 1e-017
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 454 ggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaag 513
||||||| |||| | ||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 83 ggggtgcnaataagnaggctgaaaaggaggcttttgaagnagctgaaaaggagaggaaag 24
Query: 514 ctag 517
||||
Sbjct: 23 ctag 20
>gb|CD663623.1|CD663623 UCRHV18_06ae02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ae02, mRNA sequence
Length = 511
Score = 93.7 bits (47), Expect = 1e-017
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 470 ggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctagggaggataggga 529
|||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 511 ggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataagga 452
Query: 530 aggtcaa 536
|| ||||
Sbjct: 451 agctcaa 445
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 353 acagggatcactgggatgactaccatgatgagct 320
>gb|BF264639.1|BF264639 HV_CEa0009P11f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009P11f, mRNA sequence
Length = 824
Score = 89.7 bits (45), Expect = 2e-016
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 447 gaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggag 506
||||| ||||||||||| | ||||||| ||||||| ||||||||| |||||||||||||
Sbjct: 571 gaaacgtggggtgcaaaaaaggaggctaaaaaggaggcttttgaactagctgaaaaggag 512
Query: 507 aggaaagctagggaggatagggaag 531
||||||||||| || |||| |||||
Sbjct: 511 aggaaagctagagaagataaggaag 487
>gb|AV932209.1|AV932209 AV932209 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2l08 5', mRNA sequence
Length = 582
Score = 79.8 bits (40), Expect = 2e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 497 aattaagaaccctaactacaagggtaaatggaagatcccatggattgataatccag 552
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 322 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 381
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 382 cagcatacaaaggacaatggaagcgcaag 410
>gb|AV932642.1|AV932642 AV932642 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1h23 5', mRNA sequence
Length = 540
Score = 79.8 bits (40), Expect = 2e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 459 aattaagaaccctaactacaagggtaaatggaagatcccatggattgataatccag 514
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 284 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 343
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 344 cagcatacaaaggacaatggaagcgcaag 372
>gb|AV933129.1|AV933129 AV933129 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5h13 5', mRNA sequence
Length = 580
Score = 79.8 bits (40), Expect = 2e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 500 aattaagaaccctaactacaagggtaaatggaagatcccatggattgataatccag 555
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 325 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 384
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 385 cagcatacaaaggacaatggaagcgcaag 413
>gb|BJ472996.1|BJ472996 BJ472996 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40f02 5', mRNA sequence
Length = 698
Score = 79.8 bits (40), Expect = 2e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 502 aattaagaaccctaactacaagggtaaatggaagatcccatggattgataatccag 557
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 327 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 386
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 387 cagcatacaaaggacaatggaagcgcaag 415
>gb|BJ469617.1|BJ469617 BJ469617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27g01 5', mRNA sequence
Length = 549
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataat 302
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 498 aattaagaaccctaactacaagggtaaatggaagatcccatggattgataat 549
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 323 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 382
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 383 cagcatacaaaggacaatggaagcgcaag 411
>gb|AV932384.1|AV932384 AV932384 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3g15 5', mRNA sequence
Length = 546
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 251 aattaaaaatcctaactacaagggtaaatggaagaccccatggat 295
|||||| || ||||||||||||||||||||||||| |||||||||
Sbjct: 499 aattaagaaccctaactacaagggtaaatggaagatcccatggat 543
Score = 42.1 bits (21), Expect = 0.038
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||| ||||| ||||| || ||||| ||||| |||||||| || || | | || | ||||
Sbjct: 324 agcccgacacgtgggacgatgatgatgatggcatatggaaacctaggaggataccgaatc 383
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||| |||| ||||| ||||||
Sbjct: 384 cagcatacaaaggacaatggaagcgcaag 412
>gb|BF265531.3|BF265531 HV_CEa0012I06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012I06f, mRNA sequence
Length = 768
Score = 61.9 bits (31), Expect = 4e-008
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 cctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattgggatgacagagaa 80
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
Sbjct: 673 cctcctcgtaaaatcaaggatgtgggggccaaaag-cctaaggattgggatgacagaaag 731
Query: 81 tatattg 87
|||||||
Sbjct: 732 tatattg 738
>gb|AV921016.1|AV921016 AV921016 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16i08 3', mRNA sequence
Length = 352
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 236 acagggatcactgggatgactaccatgatgagct 203
>gb|CA016410.1|CA016410 HV08M19u HV Hordeum vulgare subsp. vulgare cDNA clone HV08M19
3-PRIME, mRNA sequence
Length = 347
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 332 acagggatcactgggatgactaccatgatgagct 299
>gb|CB877156.1|CB877156 HP03M02T HP Hordeum vulgare subsp. vulgare cDNA clone HP03M02
5-PRIME, mRNA sequence
Length = 376
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 44 acagggatcactgggatgactaccatgatgagct 77
>gb|CB879806.1|CB879806 HP03M02w HP Hordeum vulgare subsp. vulgare cDNA clone HP03M02
3-PRIME, mRNA sequence
Length = 344
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 333 acagggatcactgggatgactaccatgatgagct 300
>gb|CB879901.1|CB879901 HP08M15T HP Hordeum vulgare subsp. vulgare cDNA clone HP08M15
5-PRIME, mRNA sequence
Length = 403
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 592 acagagatcactgggacgactaccatgatgagct 625
|||| ||||||||||| |||||||||||||||||
Sbjct: 73 acagggatcactgggatgactaccatgatgagct 106
>gb|AL504181.1|AL504181 AL504181 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04H09V 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 90 gatcctgatgaagttaagccagagggctatgat 122
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Sbjct: 274 gatcctgaggacgtcaagccagagggctatgat 306
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,791
Number of Sequences: 312970
Number of extensions: 93791
Number of successful extensions: 26974
Number of sequences better than 0.5: 96
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26747
Number of HSP's gapped (non-prelim): 180
length of query: 1094
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1075
effective length of database: 169,188,109
effective search space: 181877217175
effective search space used: 181877217175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)