BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012873.2.2
(1520 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-a... 593 e-168
gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachi... 577 e-163
gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedl... 545 e-153
gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachi... 539 e-152
gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hyd... 529 e-149
gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachi... 490 e-137
gb|BQ763205.1|BQ763205 EBro02_SQ007_F14_R root, 3 week, hyd... 476 e-132
gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachi... 434 e-120
gb|BI957284.1|BI957284 HVSMEn0008K05f Hordeum vulgare rachi... 402 e-110
gb|BI959591.1|BI959591 HVSMEn0020F03f Hordeum vulgare rachi... 335 3e-090
gb|BI958460.1|BI958460 HVSMEn0015C07f Hordeum vulgare rachi... 333 1e-089
gb|BF263685.3|BF263685 HV_CEa0007G08f Hordeum vulgare seedl... 309 1e-082
gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA li... 295 2e-078
gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachi... 276 2e-072
gb|BI959031.1|BI959031 HVSMEn0017M21f Hordeum vulgare rachi... 252 3e-065
gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, dr... 240 1e-061
gb|BI957282.1|BI957282 HVSMEn0008K03f Hordeum vulgare rachi... 214 6e-054
gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-a... 208 4e-052
gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedl... 200 1e-049
gb|BF263684.3|BF263684 HV_CEa0007G07f Hordeum vulgare seedl... 190 9e-047
gb|BI956546.1|BI956546 HVSMEn0004B08f Hordeum vulgare rachi... 186 1e-045
gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachi... 172 2e-041
gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA li... 170 9e-041
gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. v... 155 5e-036
gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. v... 155 5e-036
gb|CA014495.1|CA014495 HT11I05r HT Hordeum vulgare subsp. v... 101 7e-020
gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachi... 100 3e-019
gb|BQ464700.1|BQ464700 HU01A05T HU Hordeum vulgare subsp. v... 100 3e-019
gb|BQ465481.1|BQ465481 HU03M08r HU Hordeum vulgare subsp. v... 100 3e-019
gb|CA006616.1|CA006616 HU05D06r HU Hordeum vulgare subsp. v... 100 3e-019
gb|CA020044.1|CA020044 HV14C19r HV Hordeum vulgare subsp. v... 100 3e-019
gb|BQ766677.1|BQ766677 EBro08_SQ006_F23_R root, 3 week, dro... 98 1e-018
gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-a... 96 4e-018
gb|BQ467242.1|BQ467242 HS03C04r HS Hordeum vulgare subsp. v... 86 4e-015
gb|CA015399.1|CA015399 HT14D04r HT Hordeum vulgare subsp. v... 84 2e-014
gb|BM375203.2|BM375203 EBem06_SQ002_K13_R embryo, 21 DPA, n... 82 6e-014
gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. v... 82 6e-014
gb|CA021049.1|CA021049 HZ38P08r HZ Hordeum vulgare subsp. v... 82 6e-014
gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots... 76 4e-012
gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots... 76 4e-012
gb|BI957946.1|BI957946 HVSMEn0012F23f Hordeum vulgare rachi... 72 6e-011
gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedl... 66 4e-009
gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedl... 66 4e-009
gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, red... 66 4e-009
gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hyd... 64 1e-008
gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. v... 64 1e-008
gb|BI958721.1|BI958721 HVSMEn0016F17f Hordeum vulgare rachi... 62 6e-008
gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DA... 60 2e-007
gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachi... 60 2e-007
gb|AV925423.1|AV925423 AV925423 K. Sato unpublished cDNA li... 60 2e-007
gb|BQ464838.1|BQ464838 HU01M14T HU Hordeum vulgare subsp. v... 60 2e-007
gb|BG310404.1|BG310404 HVSMEc0018H08f Hordeum vulgare seedl... 58 9e-007
gb|BF064595.2|BF064595 HV_CEb0016A19f Hordeum vulgare seedl... 58 9e-007
gb|AV924570.1|AV924570 AV924570 K. Sato unpublished cDNA li... 56 4e-006
gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DA... 54 1e-005
gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike... 54 1e-005
gb|CA015542.1|CA015542 HT14K06r HT Hordeum vulgare subsp. v... 54 1e-005
gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedl... 52 6e-005
gb|BI777845.2|BI777845 EBro08_SQ002_E16_R root, 3 week, dro... 52 6e-005
gb|CA009680.1|CA009680 HU14N01r HU Hordeum vulgare subsp. v... 52 6e-005
gb|AL507080.1|AL507080 AL507080 Hordeum vulgare Barke devel... 50 2e-004
gb|AV928908.1|AV928908 AV928908 K. Sato unpublished cDNA li... 50 2e-004
gb|AV929667.1|AV929667 AV929667 K. Sato unpublished cDNA li... 50 2e-004
gb|AV930574.1|AV930574 AV930574 K. Sato unpublished cDNA li... 50 2e-004
gb|AV931426.1|AV931426 AV931426 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ463596.1|BQ463596 HI05N09r HI Hordeum vulgare subsp. v... 50 2e-004
gb|BU973464.1|BU973464 HB25A15r BC Hordeum vulgare subsp. v... 50 2e-004
gb|CA013420.1|CA013420 HT08G10r HT Hordeum vulgare subsp. v... 50 2e-004
gb|CA021688.1|CA021688 HZ40M24r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA022119.1|CA022119 HZ42D14r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA022672.1|CA022672 HZ44A09r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA024529.1|CA024529 HZ49J01r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA025466.1|CA025466 HZ52D24r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA026014.1|CA026014 HZ53N10r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA028522.1|CA028522 HZ62E15r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA028585.1|CA028585 HZ62I09r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA028959.1|CA028959 HZ63L24r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|CA029028.1|CA029028 HZ63P19r HZ Hordeum vulgare subsp. v... 50 2e-004
gb|BM444997.2|BM444997 EBem09_SQ007_C03_R embryo, 1 Day ger... 48 9e-004
gb|AV836450.1|AV836450 AV836450 K. Sato unpublished cDNA li... 44 0.013
gb|BF626636.3|BF626636 HVSMEa0018P10f Hordeum vulgare seedl... 44 0.013
gb|BG343487.1|BG343487 HVSMEg0005O08f Hordeum vulgare pre-a... 44 0.013
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 44 0.013
gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 ... 44 0.013
gb|CA001675.1|CA001675 HS05E05r HS Hordeum vulgare subsp. v... 44 0.013
gb|AL450961.1|AL450961 AL450961 Hordeum vulgare Barke etiol... 42 0.053
gb|AL500592.1|AL500592 AL500592 Hordeum vulgare Barke roots... 42 0.053
gb|AL502301.1|AL502301 AL502301 Hordeum vulgare Barke roots... 42 0.053
gb|AL503005.1|AL503005 AL503005 Hordeum vulgare Barke roots... 42 0.053
gb|BE454559.2|BE454559 HVSMEh0094E03f Hordeum vulgare 5-45 ... 42 0.053
gb|BI953687.1|BI953687 HVSMEm0013N22f Hordeum vulgare green... 42 0.053
gb|BF265665.2|BF265665 HV_CEa0013A06f Hordeum vulgare seedl... 42 0.053
gb|AV909332.1|AV909332 AV909332 K. Sato unpublished cDNA li... 42 0.053
gb|AV934049.1|AV934049 AV934049 K. Sato unpublished cDNA li... 42 0.053
gb|AV934152.1|AV934152 AV934152 K. Sato unpublished cDNA li... 42 0.053
gb|AV934159.1|AV934159 AV934159 K. Sato unpublished cDNA li... 42 0.053
gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA li... 42 0.053
gb|BQ467661.1|BQ467661 HS04H17r HS Hordeum vulgare subsp. v... 42 0.053
gb|BM442891.2|BM442891 EBro02_SQ001_L17_R root, 3 week, hyd... 42 0.053
gb|CA000262.1|CA000262 HS09C23u HS Hordeum vulgare subsp. v... 42 0.053
gb|CA001150.1|CA001150 HS05E05u HS Hordeum vulgare subsp. v... 42 0.053
gb|CA010224.1|CA010224 HT11I05u HT Hordeum vulgare subsp. v... 42 0.053
gb|BJ544054.1|BJ544054 BJ544054 K. Sato unpublished cDNA li... 42 0.053
gb|AL503414.1|AL503414 AL503414 Hordeum vulgare Barke roots... 40 0.21
gb|AL509935.1|AL509935 AL509935 Hordeum vulgare Barke devel... 40 0.21
gb|BG368804.1|BG368804 HVSMEi0020L22f Hordeum vulgare 20 DA... 40 0.21
gb|BG369378.2|BG369378 HVSMEi0024C17f Hordeum vulgare 20 DA... 40 0.21
gb|BF264429.3|BF264429 HV_CEa0009G11f Hordeum vulgare seedl... 40 0.21
gb|BQ460455.1|BQ460455 HA09J12r HA Hordeum vulgare subsp. v... 40 0.21
gb|BI777825.2|BI777825 EBro08_SQ002_D11_R root, 3 week, dro... 40 0.21
gb|BQ763026.1|BQ763026 EBro02_SQ006_N19_R root, 3 week, hyd... 40 0.21
gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. v... 40 0.21
gb|BU986702.1|BU986702 HF12K17r HF Hordeum vulgare subsp. v... 40 0.21
gb|CA023353.1|CA023353 HZ45P11r HZ Hordeum vulgare subsp. v... 40 0.21
gb|CA030542.1|CA030542 HX07F23r HX Hordeum vulgare subsp. v... 40 0.21
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 40 0.21
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 40 0.21
gb|CB858655.1|CB858655 HI07N14w HI Hordeum vulgare subsp. v... 40 0.21
gb|CB876998.1|CB876998 HP03D05T HP Hordeum vulgare subsp. v... 40 0.21
gb|CB879660.1|CB879660 HP03D05w HP Hordeum vulgare subsp. v... 40 0.21
gb|CV061162.1|CV061162 BNEL65f3 Barley EST endosperm librar... 40 0.21
gb|CK125540.1|CK125540 BES1824109a02 BES1824 Hordeum vulgar... 40 0.21
>gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007N17f, mRNA sequence
Length = 796
Score = 593 bits (299), Expect = e-168
Identities = 449/499 (89%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 136 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 195
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 196 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 255
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 256 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 315
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 316 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 375
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 376 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 435
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 436 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcgtcca 495
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 496 tcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgacgagtcctgct 555
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 ggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggcaaggcggtgg 615
Query: 772 cggagcacgcggcgtggga 790
|||| || |||||||||||
Sbjct: 616 cggaacaagcggcgtggga 634
>gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025A09f, mRNA sequence
Length = 669
Score = 577 bits (291), Expect = e-163
Identities = 447/499 (89%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 138 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 197
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 198 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 257
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 258 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 317
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 318 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 377
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 378 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 437
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 438 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcgtcca 497
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 498 tcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgacgagtcctgct 557
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
||||||| || ||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 558 ggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggcaaagcggtgg 617
Query: 772 cggagcacgcggcgtggga 790
| || || |||||||||||
Sbjct: 618 ccgatcaagcggcgtggga 636
>gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020B01f, mRNA sequence
Length = 893
Score = 545 bits (275), Expect = e-153
Identities = 509/585 (87%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 132 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 191
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 192 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 251
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 252 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 311
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 312 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 371
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 372 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 431
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 432 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcgtcca 491
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 492 tcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgacgagtcctgct 551
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
||||||| || || |||||| ||| |||| |||||||||||||||| |||| || ||||
Sbjct: 552 ggagcgatcttgaattctgcaagattaccaagaactggtactgctactgcaatgccgtgg 611
Query: 772 cggagcacgcggcgtgggagacggcccggcggcggggcgtggacctggtggtggtgaacc 831
| || || || || ||||||| || ||| | ||||||||||||| ||||| || |
Sbjct: 612 ctgatcatgctgcntgggagaaagctaggc-tctncgcgtggacctggt-gtggttaaac 669
Query: 832 ccgtgctggtggtgggccccctgctgcaggcgacggtgaacgcca 876
||||||||||||| || ||| ||||||| |||||||||||||||
Sbjct: 670 ccgtgctggtggtcgggcccgtgctgcatccgacggtgaacgcca 714
>gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013G15f, mRNA sequence
Length = 655
Score = 539 bits (272), Expect = e-152
Identities = 431/484 (89%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 135 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 194
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 195 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 254
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 255 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 314
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 315 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 374
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 375 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 434
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 435 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcttcca 494
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||||| ||||| |||||||| || ||||||||||| ||||
Sbjct: 495 tcggcgccgtcaccatggaccccaaccgcggccccgacgtggtcgtcgacgagtcctgct 554
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
||||||| || ||||||||| ||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 555 ggagcgatcttgagttctgcaagaaaaccaaaaactggtactgttacgggaaggcggtgg 614
Query: 772 cgga 775
||||
Sbjct: 615 cgga 618
>gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J04 5', mRNA sequence
Length = 598
Score = 529 bits (267), Expect = e-149
Identities = 418/467 (89%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 132 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 191
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 192 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 251
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 252 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 311
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 312 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 371
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 372 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 431
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggc-gggtggtgttcacgtcgtcc 650
|||||||| ||||||||||||| |||||||| ||||| | |||| |||||||||||||||
Sbjct: 432 acgtgatcgacgcggcggcggacgccggcaccgtgcgccggggttgtgttcacgtcgtcc 491
Query: 651 atcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgc 710
||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 492 atcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgacgagtcctgc 551
Query: 711 tggagcgacctcgagttctgcgagaaaaccaggaactggtactgcta 757
|||||||| || ||||||||| ||||||||| |||||||||||||||
Sbjct: 552 tggagcgatcttgagttctgcaagaaaaccaagaactggtactgcta 598
>gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O20f, mRNA sequence
Length = 670
Score = 490 bits (247), Expect = e-137
Identities = 382/427 (89%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 139 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 198
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 199 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 258
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 259 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 318
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 319 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 378
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 379 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 438
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 439 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcgtcca 498
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 499 tcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgacgagtcctgct 558
Query: 712 ggagcga 718
| |||||
Sbjct: 559 gaagcga 565
>gb|BQ763205.1|BQ763205 EBro02_SQ007_F14_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_F14 5', mRNA sequence
Length = 426
Score = 476 bits (240), Expect = e-132
Identities = 366/408 (89%)
Strand = Plus / Plus
Query: 582 ggcaccgagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttc 641
||||| || ||||||||| ||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 7 ggcacggaatacgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttc 66
Query: 642 acgtcgtccatcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgac 701
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 67 acgtcgtccatcggcgccgtcaccatggaccccaaccgcgggcccgacgtggtcgtcgac 126
Query: 702 gagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggc 761
||||| ||||||||||| || ||||||||| ||||||||| |||||||||||||||||||
Sbjct: 127 gagtcctgctggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggc 186
Query: 762 aaggcggtggcggagcacgcggcgtgggagacggcccggcggcggggcgtggacctggtg 821
||||||||||||||||| ||||||||||||| ||| || ||| |||||||||||||||
Sbjct: 187 aaggcggtggcggagcaggcggcgtgggagaaggcgagggcgcgcggcgtggacctggtg 246
Query: 822 gtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtgaacgccagcatc 881
||||||||||| ||||||||||| || || ||||||||| ||||||||||||||||| |
Sbjct: 247 gtggtgaacccggtgctggtggtcgggccgctgctgcagccgacggtgaacgccagcgcc 306
Query: 882 gcgcacatcctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgcaggcg 941
|||||||||||||||||||| |||||||| ||| | | | ||||||||| ||||| |||
Sbjct: 307 gcgcacatcctcaagtacctcgacggctccgccaggaagtacgccaacgcggtgcaagcg 366
Query: 942 tacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgag 989
|||||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 367 tacgtggacgtgcgcgacgtcgccggcgcgcacctccgggtcttcgag 414
>gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015E11f,
mRNA sequence
Length = 620
Score = 434 bits (219), Expect = e-120
Identities = 372/423 (87%)
Strand = Plus / Plus
Query: 723 gagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtggcggagcacgcg 782
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 7 gagttctgcaagaaaaccaagaactggtactgctacggcaaggcggtggcggagcaggcg 66
Query: 783 gcgtgggagacggcccggcggcggggcgtggacctggtggtggtgaaccccgtgctggtg 842
|||||||||| ||| || ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 67 gcgtgggagaaggcgagggcgcgcggcgtggacctggtggtggtgaacccggtgctggtg 126
Query: 843 gtgggccccctgctgcaggcgacggtgaacgccagcatcgcgcacatcctcaagtacctg 902
|| || || ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 127 gtcgggccgctgctgcagccgacggtgaacgccagcgccgcgcacatcctcaagtacctc 186
Query: 903 gacggctcggcccgcaccttcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtg 962
|||||||| ||| | | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 187 gacggctccgccaggaagtacgccaacgcggtgcaggcgtacgtggacgtgcgcgacgtc 246
Query: 963 gccgacgcgcacctccgcgtcttcgagagcccccgcgcgtccggccgccacctctgcgcc 1022
|||| |||||||||||| ||||||||| |||| || ||||||||| |||||||||||
Sbjct: 247 gccggcgcgcacctccgggtcttcgaggcgccccaagcctccggccgctacctctgcgcc 306
Query: 1023 gagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtac 1082
||||||||||| |||||| |||||||| ||| ||||||| |||||||||||||| |||||
Sbjct: 307 gagcgcgtcctgcaccgccaggacgtcttccacatcctctccaagctcttcccctagtac 366
Query: 1083 cccgtcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctcc 1142
||||||||| | |||||||| ||||| ||||| || | |||||| || |||||| | |||
Sbjct: 367 cccgtcccaacaaggtgctctgacgatgtgaacccaccgaagcatccttacaagatgtcc 426
Query: 1143 aac 1145
|||
Sbjct: 427 aac 429
>gb|BI957284.1|BI957284 HVSMEn0008K05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008K05f, mRNA sequence
Length = 860
Score = 402 bits (203), Expect = e-110
Identities = 346/394 (87%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||
Sbjct: 124 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcgggc 183
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 184 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 243
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 244 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 303
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 304 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 363
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || |
Sbjct: 364 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggtgaggggcacggaat 423
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||| | ||
Sbjct: 424 acgtgatcgacgcggcggcggacgccggcaccgtgcgccgggttgtgttcacgtcntgca 483
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcc 685
|||| | || |||||||||||||| ||||||||
Sbjct: 484 tcgggggcggcaccatggaccccaaccgcgggcc 517
>gb|BI959591.1|BI959591 HVSMEn0020F03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020F03f, mRNA sequence
Length = 646
Score = 335 bits (169), Expect = 3e-090
Identities = 289/329 (87%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| | |||| | || ||||
Sbjct: 134 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtggtggctcgtcaagc 193
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 194 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 253
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 254 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 313
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
| || |||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct: 314 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgtgttccacaccg 373
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||||||||||||||||||||| ||||| |||||||||||||||| | | ||||| || |
Sbjct: 374 cctcccccgtcaccgacgaccctgagcagatggtggagccggcggcgaggggcacggaat 433
Query: 592 acgtgatcaacgcggcggcggaggccggc 620
|||||||| |||| | |||||| ||||||
Sbjct: 434 acgtgatcgacgccggggcggacgccggc 462
>gb|BI958460.1|BI958460 HVSMEn0015C07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015C07f,
mRNA sequence
Length = 656
Score = 333 bits (168), Expect = 1e-089
Identities = 306/352 (86%)
Strand = Plus / Plus
Query: 723 gagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtggcggagcacgcg 782
|||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 7 gagtgctgcaagaaaaccaagaactggtactgctacggcaaggcggtggcggagcaggcg 66
Query: 783 gcgtgggagacggcccggcggcggggcgtggacctggtggtggtgaaccccgtgctggtg 842
|||||||||| ||| || ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 67 gcgtgggagaaggcgagggcgcgcggcgtggacctggtggtggtgaacccggtgctggtg 126
Query: 843 gtgggccccctgctgcaggcgacggtgaacgccagcatcgcgcacatcctcaagtacctg 902
|| || || ||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 127 gtcgggccgctgctgcagccgacggtgaacgccggcggcgggcacatcctcaagtacctc 186
Query: 903 gacggctcggcccgcaccttcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtg 962
|||||||| ||| | | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 187 gacggctccgccaggaagtacgccaacgcggtgcaggcgtacgtggacgtgcgcgacgtc 246
Query: 963 gccgacgcgcacctccgcgtcttcgagagcccccgcgcgtccggccgccacctctgcgcc 1022
|||| |||||||||||| ||||||||| |||| || ||||||||| |||||||||||
Sbjct: 247 gccggcgcgcacctccgggtcttcgaggcgccccaggcctccggccgctacctctgcgcc 306
Query: 1023 gagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttcc 1074
|| |||||||| ||||| ||||||| ||| |||||||| | |||||||||
Sbjct: 307 gatcgcgtccttcaccggcaggacgtgttcctcatcctcggcgagctcttcc 358
>gb|BF263685.3|BF263685 HV_CEa0007G08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007G08f, mRNA sequence
Length = 819
Score = 309 bits (156), Expect = 1e-082
Identities = 402/484 (83%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| || ||| | || ||||
Sbjct: 59 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcttggatcgtcaagc 118
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
| ||||| |||||||| ||| | ||| |||||||||||||||||||||||| ||||||
Sbjct: 119 tcctgctggagaaggggtacgccgtgcgaggcaccgtcaggaacccagatgacgcgaaga 178
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
|||||||||| | ||| || | |||||| || ||||||||| | || ||||||||||| |
Sbjct: 179 acgcgcacctgagggctctcgccggcgcggcggagcggctggtgctgtgcaaggccgacc 238
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
|||| ||| |||||| | || |||| | |||||||| ||||||||||||||||
Sbjct: 239 tgctcgacggcgacgcgctgcgcgccgccatcgccggctgccacggcgtcttccacaccg 298
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
|||| || |||||||||||||||||| | |||||||||||||||||| | ||||| |
Sbjct: 299 cctcgccggtcaccgacgacccggaggagatggtggagccggcggtgaggggcacgcgct 358
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||| ||| |||| ||||| || |||||||||| || || || ||| ||||||||||||
Sbjct: 359 acgtcatcgacgccgcggcccagtccggcacggtccgccgcgtcgtgctcacgtcgtcca 418
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| |||| || |||| ||| ||||||||||| ||||
Sbjct: 419 tcggcgccgtcgccatggaccccagccgcgacccggacgccgtcgtcgacgagtcctgct 478
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
||||| |||||||||||||| |||| |||| |||||||||||||||||| ||| ||||||
Sbjct: 479 ggagcaacctcgagttctgcaagaagaccaagaactggtactgctacgggaagacggtgg 538
Query: 772 cgga 775
||||
Sbjct: 539 cgga 542
>gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak30a24 5', mRNA sequence
Length = 439
Score = 295 bits (149), Expect = 2e-078
Identities = 255/292 (87%)
Strand = Plus / Plus
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
||||||||||||||||| ||||||||| ||||||||||| |||||||| ||| | | |
Sbjct: 1 cgacggtgaacgccagcgccgcgcacatnctcaagtacctcgacggctccgccaggaagt 60
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||| |||||||||| |||||||||||||||||| | || |||||||||||| |
Sbjct: 61 acgccaacgcggtgcaggcgtncgtggacgtgcgcgacgtcgncggcgcgcacctccggg 120
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcg 1041
|||||||| |||| || ||||||||| |||||||||||||||||||||| ||||||
Sbjct: 121 tcttcgaggcgccccaggcctccggccgctacctctgcgccgagcgcgtcctgcaccgcc 180
Query: 1042 aggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgct 1101
|||||||||||| ||| ||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 181 aggacgtcgtccacattctcgccaagctcttccccgagtaccncgtcccaacaaggtgct 240
Query: 1102 ccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagct 1153
||||||||||| || ||||||||||| |||||| | ||||||||||||||
Sbjct: 241 ntgacgaggtgaacccacggaagcagccttacaagatgtccaaccagaagct 292
>gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O19f, mRNA sequence
Length = 661
Score = 276 bits (139), Expect = 2e-072
Identities = 408/499 (81%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| |||||| | || ||||
Sbjct: 84 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagc 143
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
| || ||||| ||||| ||| | ||| ||||||||||||||||| |||||| ||||||
Sbjct: 144 tcctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccccgatgacgcgaaga 203
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
|||||||||| | ||| || | |||||| || ||| ||||| | || ||||||||||| |
Sbjct: 204 acgcgcacctgagggctctcgccggcgcggcggagaggctggtgctgtgcaaggccgacc 263
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
|||| ||| |||||| | ||| ||| | |||||||| ||||||||||||||||
Sbjct: 264 tgctcgacggcgacgcgctgcgccaagccatcgccggctgccacggcgtcttccacaccg 323
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
| || || ||||||||||| |||||| | |||||||||||||||||| | |||||
Sbjct: 324 cgtcgccggtcaccgacgatccggaggagatggtggagccggcggtgaggggcacgctta 383
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|| | ||| |||||||||||||| |||||||||| || || || ||| | ||||||||||
Sbjct: 384 acatcatcgacgcggcggcggagtccggcacggtccgccgcgtcgtgctgacgtcgtcca 443
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
||||||| | ||||||||||||| ||||| |||||| ||| ||||||||||| ||||
Sbjct: 444 tcggcgctatcgccatggaccccaaccgcggcgccgacgccgtcgtcgacgagtcctgct 503
Query: 712 ggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtgg 771
|||||||||||||||||||| |||| |||| ||||||||||||||| || ||||| | |
Sbjct: 504 ggagcgacctcgagttctgcaagaagaccaagaactggtactgctatgggaaggcngcng 563
Query: 772 cggagcacgcggcgtggga 790
|||| | |||||||||||
Sbjct: 564 cggancnggcggcgtggga 582
>gb|BI959031.1|BI959031 HVSMEn0017M21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M21f, mRNA sequence
Length = 646
Score = 252 bits (127), Expect = 3e-065
Identities = 339/410 (82%)
Strand = Plus / Plus
Query: 381 ggcaccgtcaggaacccagatgacccgaagaacgcgcacctcaaggcgctggacggcgcc 440
||||||||||||||||| |||||| |||||||||||||||| | ||| || | ||||||
Sbjct: 69 ggcaccgtcaggaaccccgatgacgcgaagaacgcgcacctgagggctctcgccggcgcg 128
Query: 441 gccgagcggctgatcctctgcaaggccgatctgctggactacgacgccatctgccgcgcc 500
|| ||| ||||| | || ||||||||||| ||||| ||| |||||| | || | |||
Sbjct: 129 gcggagaggctggtgctgtgcaaggccgacctgctcgacggcgacgcgctgcgcggagcc 188
Query: 501 gtgcagggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaa 560
| |||||||| ||||||||||||||||| || || ||||||||||| |||||| |
Sbjct: 189 atcgccggctgccacggcgtcttccacaccgcgtcgccggtcaccgacgatccggaggag 248
Query: 561 atggtggagccggcggtgcgcggcaccgagtacgtgatcaacgcggcggcggaggccggc 620
|||||||||||||||||| | ||||| || | ||| |||||||||||||| |||||
Sbjct: 249 atggtggagccggcggtgaggggcacgcttaacatcatcgacgcggcggcggagtccggc 308
Query: 621 acggtgcggcgggtggtgttcacgtcgtccatcggcgccgtgaccatggaccccaagcgc 680
||||| || || || ||| | ||||||||||||||||| | ||||||||||||| |||
Sbjct: 309 acggtccgccgcgtcgtgctgacgtcgtccatcggcgctatcgccatggaccccaaccgc 368
Query: 681 gggcccgacgtcgtggtcgacgagtcgtgctggagcgacctcgagttctgcgagaaaacc 740
|| |||||| ||| ||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 369 ggcgccgacgccgtcgtcgacgagtcctgctggagcgacctcgagttctgcaagaagacc 428
Query: 741 aggaactggtactgctacggcaaggcggtggcggagcacgcggcgtggga 790
| ||||||||||||||| || ||||||| |||||| | |||||||||||
Sbjct: 429 aagaactggtactgctatgggaaggcggcggcggancgggcggcgtggga 478
>gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D21 5', mRNA sequence
Length = 434
Score = 240 bits (121), Expect = 1e-061
Identities = 202/229 (88%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
||||||||||||||||||| |||||||| |||||||||||||| |||||| | || ||||
Sbjct: 117 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagc 176
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
|||| || |||| ||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 177 tgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaaga 236
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
| || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 237 atgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgacc 296
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgt 520
| || |||||||||||||||||| |||||| |||||||||| |||||
Sbjct: 297 tcctcgactacgacgccatctgcgccgccgtcgagggctgccacggcgt 345
Score = 95.6 bits (48), Expect = 4e-018
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 781 cggcgtgggagacggcccggcggcggggcgtggacctggtggtggtgaaccccgtgctgg 840
|||||||||||| ||| || ||| |||||||||||||||||||||||||| |||||||
Sbjct: 340 cggcgtgggagaaggcgagggcgcgcggcgtggacctggtggtggtgaacccggtgctgg 399
Query: 841 tggtgggccccctgctgcaggcgacggtgaacgcc 875
|||| || || |||||||| ||||||||||||||
Sbjct: 400 tggtcgggccgntgctgcagccgacggtgaacgcc 434
>gb|BI957282.1|BI957282 HVSMEn0008K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008K03f, mRNA sequence
Length = 893
Score = 214 bits (108), Expect = 6e-054
Identities = 181/204 (88%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggtt-ggtgaag 350
||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||| |
Sbjct: 124 acgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcggtgggg 183
Query: 351 ctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaag 410
||||| || |||| ||| ||||| || |||||||| || |||||||||||||||||||||
Sbjct: 184 ctgctcctggagaggggctacaccgtcaagggcacagtgaggaacccagatgacccgaag 243
Query: 411 aacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgat 470
| || ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 244 agtgcacacctgaaggcgctggacggcgccgccgagaggctggtcctctgcaaggccgac 303
Query: 471 ctgctggactacgacgccatctgc 494
|| |||||||||||||||||||||
Sbjct: 304 ctcctggactacgacgccatctgc 327
>gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009D04f, mRNA sequence
Length = 850
Score = 208 bits (105), Expect = 4e-052
Identities = 207/241 (85%)
Strand = Plus / Minus
Query: 1002 tccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcctc 1061
||||||||| |||| ||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 468 tccggccgctacctttgcgccgagcgcgtcctgcaccgccaggacgtcgtccacatcctc 409
Query: 1062 gccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcgg 1121
|||||||||||||||||||||||||||||| | |||||||| ||||||||||| || |||
Sbjct: 408 gccaagctcttccccgagtaccccgtcccaacaaggtgctctgacgaggtgaacccacgg 349
Query: 1122 aagcagccgtacaagttctccaaccagaagctccgggacctggggctgcagttccggccg 1181
|||||||| |||||| | |||||||||||||| | ||| || || || ||||| ||
Sbjct: 348 aagcagccttacaagatgtccaaccagaagctgcaggatcttggcctcaagttcactcct 289
Query: 1182 gtcagccagtcgctttacgacacggtgaagaacctccaggagaagggacacctgccggtg 1241
|| | | | || || ||||| |||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 288 gtgaacgactctctgtacgagacggtgaagagcctccaggagaaggggcacctcccggtg 229
Query: 1242 c 1242
|
Sbjct: 228 c 228
>gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0005A11f, mRNA sequence
Length = 586
Score = 200 bits (101), Expect = 1e-049
Identities = 206/241 (85%)
Strand = Plus / Minus
Query: 1002 tccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcctc 1061
||||||||| |||| ||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 457 tccggccgctacctatgcgccgagcgcgtcctgcaccgccaggacgtcgtccacatcctc 398
Query: 1062 gccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcgg 1121
|||||||||||||||||||||||||||||| | |||||||| ||||||||||| || ||
Sbjct: 397 gccaagctcttccccgagtaccccgtcccaacaaggtgctctgacgaggtgaaccctcgt 338
Query: 1122 aagcagccgtacaagttctccaaccagaagctccgggacctggggctgcagttccggccg 1181
|||||||| |||||| | |||||||||||||| | ||| || || || ||||| ||
Sbjct: 337 aagcagccttacaagatgtccaaccagaagctgcaggatcttggcctcaagttcactcct 278
Query: 1182 gtcagccagtcgctttacgacacggtgaagaacctccaggagaagggacacctgccggtg 1241
|| | | | || || ||||| |||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 277 gtgaacgactctctgtacgagacggtgaagagcctccaggagaaggggcacctcccggtg 218
Query: 1242 c 1242
|
Sbjct: 217 c 217
>gb|BF263684.3|BF263684 HV_CEa0007G07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007G07f, mRNA sequence
Length = 437
Score = 190 bits (96), Expect = 9e-047
Identities = 300/368 (81%)
Strand = Plus / Plus
Query: 303 gtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagctgctgctcgag 362
||||||||||||||||| | ||| ||||||| || ||| | || ||||| ||||| |||
Sbjct: 70 gtgtgcgtgaccggcgccggcggctacatcgggtcttggatcgtcaagctcctgctggag 129
Query: 363 aagggatacactgtgaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctc 422
||||| ||| | ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 aaggggtacgccgtgcgaggcaccgtcaggaacccagatgacgcgaagaacgcgcacctg 189
Query: 423 aaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatctgctggactac 482
| ||| || | |||||| || ||||||||| | || ||||||||||| ||||| ||| |
Sbjct: 190 agggctctcgccggcgcggcggagcggctggtgctgtgcaaggccgacctgctcgacggc 249
Query: 483 gacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccgcctcccccgtc 542
||||| | || |||| | |||||||| ||||| |||||||||||||| || |||
Sbjct: 250 gacgcgctgcgcgccgccatcgccggctgccacggcgtattccacaccgcctcgccggtc 309
Query: 543 accgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagtacgtgatcaac 602
||||||||||||||| | |||||||||||||||||| | ||||| ||||| ||| ||
Sbjct: 310 accgacgacccggaggagatggtggagccggcggtgaggggcacgcgctacgtcatcgac 369
Query: 603 gcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtccatcggcgccgtg 662
|| ||||| || |||||||||| || || || ||| ||||||||||||||||||||||
Sbjct: 370 gccgcggcccagtccggcacggtccgccgcgtcgtgctcacgtcgtccatcggcgccgtc 429
Query: 663 accatgga 670
|||||||
Sbjct: 430 gccatgga 437
>gb|BI956546.1|BI956546 HVSMEn0004B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004B08f, mRNA sequence
Length = 793
Score = 186 bits (94), Expect = 1e-045
Identities = 315/386 (81%), Gaps = 2/386 (0%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| |||||| | || ||||
Sbjct: 80 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggatcgtcaagc 139
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcagga-acccag-atgacccgaa 409
| ||||| |||||||| ||| | ||| ||||||||||||| || | | ||||| | ||
Sbjct: 140 tcctgctggagaaggggtacgccgtgcgaggcaccgtcaggagacgcgggatgacgccaa 199
Query: 410 gaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccga 469
|||||||||||| | ||| || | |||||| || ||||||||| | || |||||||||||
Sbjct: 200 gaacgcgcacctgagggctctcgccggcgcggcggagcggctggtgctgtgcaaggccga 259
Query: 470 tctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacac 529
||||| ||| |||||| | || |||| | |||||||| ||||||||||||||
Sbjct: 260 cctgctcgacgccgacgcgctgcgcgccgccatcgccggctgccacggcgtcttccacac 319
Query: 530 cgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccga 589
|||||| || |||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 320 cgcctcgccggtcaccgacgacccggaggagatggtggagccggcggtgaggggcacgcg 379
Query: 590 gtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtc 649
||||| ||| |||| ||||||||| |||||||||| || || || || ||||||||||
Sbjct: 380 ctacgtcatcgacgccgcggcggagtccggcacggtccgccgcgtcctgctcacgtcgtc 439
Query: 650 catcggcgccgtgaccatggacccca 675
|||||||||||| ||||||||||||
Sbjct: 440 catcggcgccgtcgccatggacccca 465
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 711 tggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcggtg 770
||||||||||| | ||||||| |||| ||| |||||||| ||||||||| ||| |||||
Sbjct: 502 tggagcgacctagggttctgcaagaagaccgagaactggtgctgctacgggaagacggtg 561
Query: 771 gcgga 775
|||||
Sbjct: 562 gcgga 566
>gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012L23f, mRNA sequence
Length = 455
Score = 172 bits (87), Expect = 2e-041
Identities = 297/367 (80%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| |||||| | || ||||
Sbjct: 77 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagc 136
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
| || ||||| ||||| ||| | ||| ||||||||||||||||| |||||| ||||||
Sbjct: 137 tcctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccccgatgacgcgaaga 196
Query: 412 acgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatc 471
|||||||||| | ||| || | |||||| || ||| ||||| | || ||||||||||| |
Sbjct: 197 acgcgcacctgagggctctcgccggcgcggcggagaggctggtgctgtgcaaggccgacc 256
Query: 472 tgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccg 531
|||| ||| |||||| | ||| ||| | |||||||| ||||||||||||||||
Sbjct: 257 tgctcgacggcgacgcgctgcgccaagccatcgccggctgccacggcgtcttccacaccg 316
Query: 532 cctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagt 591
| || || ||||||||||| |||||| | |||||||||||||||||| | |||||
Sbjct: 317 cgtcgccggtcaccgacgatccggaggagatggtggagccggcggtgaggggcacgctta 376
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|| | ||| |||||||||||||| |||||||||| || || || ||| | ||||||||||
Sbjct: 377 acatcatcgacgcggcggcggagtccggcacggtccgccgcgtcgtgctgacgtcgtcca 436
Query: 652 tcggcgc 658
|||||||
Sbjct: 437 tcggcgc 443
>gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak30a24 3', mRNA sequence
Length = 362
Score = 170 bits (86), Expect = 9e-041
Identities = 184/217 (84%)
Strand = Plus / Minus
Query: 1026 cgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtacccc 1085
|||||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 362 cgcgtcctgcaccgccagnacgtcgtccacatcctcgccaagctcttccccgagtacccc 303
Query: 1086 gtcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaac 1145
|||||| | |||||||| ||||||||||| || ||||||||||| |||||| | ||||||
Sbjct: 302 gtcccaacaaggtgctctgacgaggtgaacccacggaagcagccttacaagatgtccaac 243
Query: 1146 cagaagctccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacg 1205
|||||||| | ||| || || || ||||| || || | | | || || ||||| |||
Sbjct: 242 cagaagctgcaggatcttggcctcaagttcactcctgtgaacgactctctgtacgagacg 183
Query: 1206 gtgaagaacctccaggagaagggacacctgccggtgc 1242
||||||| ||||||||||||||| ||||| |||||||
Sbjct: 182 gtgaagagcctccaggagaaggggcacctcccggtgc 146
>gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB31A09
5-PRIME, mRNA sequence
Length = 557
Score = 155 bits (78), Expect = 5e-036
Identities = 290/355 (81%), Gaps = 8/355 (2%)
Strand = Plus / Plus
Query: 818 ggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtgaacgccag 877
||||||||||||||| ||||||||| |||||| ||||||| || |||||||||||||
Sbjct: 9 ggtggtggtgaacccggtgctggtgcagggcccggcgctgcagccggcggtgaacgccag 68
Query: 878 catcgcgcacatcctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgca 937
| || ||||| | ||||||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 69 cctcacgcacgtgctcaagtacctcgacggctccgccaagacgtacgccaacgccgtgca 128
Query: 938 ggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccg 997
|||||||||| |||| |||||| |||| ||||||| ||| |||||||||| |||||||
Sbjct: 129 ggcgtacgtgcacgtccgcgacaccgccgccgcgcacgtcctcgtcttcgag-gcccccg 187
Query: 998 -cgcgtccggccgccacctctgc---gccga--gcg-cgtcctccaccgcgaggacgtcg 1050
||| |||| ||| |||| ||| ||||| ||| ||| |||||||| |||||||| |
Sbjct: 188 ccgccgccgggcgctacctgtgcgtggccgacggcgccgtgctccaccgggaggacgtgg 247
Query: 1051 tccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgagg 1110
|| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||| ||
Sbjct: 248 tcaccatcctccgcaagttcttccccgagtaccccatccccagcaggtgctctgactcgg 307
Query: 1111 tgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggg 1165
|||| ||| |||||| |||||||||| | || |||||| |||||| || |||||
Sbjct: 308 tgaacccgaggaagcggccgtacaagatgtcgaaccagcggctccgtgagctggg 362
>gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB32A09
5-PRIME, mRNA sequence
Length = 559
Score = 155 bits (78), Expect = 5e-036
Identities = 290/355 (81%), Gaps = 8/355 (2%)
Strand = Plus / Plus
Query: 818 ggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtgaacgccag 877
||||||||||||||| ||||||||| |||||| ||||||| || |||||||||||||
Sbjct: 9 ggtggtggtgaacccggtgctggtgcagggcccggcgctgcagccggcggtgaacgccag 68
Query: 878 catcgcgcacatcctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgca 937
| || ||||| | ||||||||||| |||||||| ||| || | |||||||||||||||
Sbjct: 69 cctcacgcacgtgctcaagtacctcgacggctccgccaagacgtacgccaacgccgtgca 128
Query: 938 ggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccg 997
|||||||||| |||| |||||| |||| ||||||| ||| |||||||||| |||||||
Sbjct: 129 ggcgtacgtgcacgtccgcgacaccgccgccgcgcacgtcctcgtcttcgag-gcccccg 187
Query: 998 -cgcgtccggccgccacctctgc---gccga--gcg-cgtcctccaccgcgaggacgtcg 1050
||| |||| ||| |||| ||| ||||| ||| ||| |||||||| |||||||| |
Sbjct: 188 ccgccgccgggcgctacctgtgcgtggccgacggcgccgtgctccaccgggaggacgtgg 247
Query: 1051 tccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgagg 1110
|| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||| ||
Sbjct: 248 tcaccatcctccgcaagttcttccccgagtaccccatccccagcaggtgctctgactcgg 307
Query: 1111 tgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggg 1165
|||| ||| |||||| |||||||||| | || |||||| |||||| || |||||
Sbjct: 308 tgaacccgaggaagcggccgtacaagatgtcgaaccagcggctccgtgagctggg 362
>gb|CA014495.1|CA014495 HT11I05r HT Hordeum vulgare subsp. vulgare cDNA clone HT11I05
5-PRIME, mRNA sequence
Length = 654
Score = 101 bits (51), Expect = 7e-020
Identities = 122/145 (84%), Gaps = 3/145 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| |||| |||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 454 acgtgatcagagcggtggcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 510
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| ||| | ||||||| |||| |||||||| | ||||
Sbjct: 511 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgaggcctgct 570
Query: 712 ggagcgacctcgagttctgcgagaa 736
|||||||| ||| |||||| ||||
Sbjct: 571 ggagcgactacgacttctgcaagaa 595
>gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012J23f, mRNA sequence
Length = 464
Score = 99.6 bits (50), Expect = 3e-019
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| |||||| | || ||||
Sbjct: 77 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagc 136
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
| || ||||| ||||| ||| | ||| ||||||||||||||||| |||||| ||||||
Sbjct: 137 tcctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccccgatgacgcgaaga 196
Query: 412 acgcgcacct 421
||||||||||
Sbjct: 197 acgcgcacct 206
>gb|BQ464700.1|BQ464700 HU01A05T HU Hordeum vulgare subsp. vulgare cDNA clone HU01A05
5-PRIME, mRNA sequence
Length = 661
Score = 99.6 bits (50), Expect = 3e-019
Identities = 109/128 (85%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 495 acgtgatcagagcggcagcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 551
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| ||| | ||||||| |||| |||||||| | ||||
Sbjct: 552 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgaggcctgct 611
Query: 712 ggagcgac 719
||||||||
Sbjct: 612 ggagcgac 619
>gb|BQ465481.1|BQ465481 HU03M08r HU Hordeum vulgare subsp. vulgare cDNA clone HU03M08
5-PRIME, mRNA sequence
Length = 415
Score = 99.6 bits (50), Expect = 3e-019
Identities = 109/128 (85%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 229 acgtgatcagagcggcagcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 285
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| ||| | ||||||| |||| |||||||| | ||||
Sbjct: 286 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgaggcctgct 345
Query: 712 ggagcgac 719
||||||||
Sbjct: 346 ggagcgac 353
>gb|CA006616.1|CA006616 HU05D06r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D06
5-PRIME, mRNA sequence
Length = 459
Score = 99.6 bits (50), Expect = 3e-019
Identities = 109/128 (85%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 229 acgtgatcagagcggcagcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 285
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| ||| | ||||||| |||| |||||||| | ||||
Sbjct: 286 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgaggcctgct 345
Query: 712 ggagcgac 719
||||||||
Sbjct: 346 ggagcgac 353
>gb|CA020044.1|CA020044 HV14C19r HV Hordeum vulgare subsp. vulgare cDNA clone HV14C19
5-PRIME, mRNA sequence
Length = 585
Score = 99.6 bits (50), Expect = 3e-019
Identities = 109/128 (85%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 126 acgtgatcagagcggcagcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 182
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||||||| |||||||||||| ||| | ||||||| |||| |||||||| | ||||
Sbjct: 183 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgaggcctgct 242
Query: 712 ggagcgac 719
||||||||
Sbjct: 243 ggagcgac 250
>gb|BQ766677.1|BQ766677 EBro08_SQ006_F23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_F23 5', mRNA sequence
Length = 657
Score = 97.6 bits (49), Expect = 1e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcccggcg 802
||||||||||||||||| |||| ||||||| ||||| | ||| |||||||| ||||
Sbjct: 396 gaactggtactgctacgccaagacggtggccgagcaggacgcgcttgagacggcgcggca 455
Query: 803 gcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggc 862
||| ||| | || ||||| |||||||||| ||||||||| ||||||| ||||||||| |
Sbjct: 456 gcgcggcatcgagctggtcgtggtgaacctggtgctggtgctgggcccgctgctgcagcc 515
Query: 863 gacggtgaacgccagca 879
|||||||||||| ||||
Sbjct: 516 gacggtgaacgcgagca 532
Score = 75.8 bits (38), Expect = 4e-012
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||| ||||| |||||||| |||| |||||||||||||||||||| ||| | ||| |
Sbjct: 163 ggctgcgagggcatcttccacgccgcttcccccgtcaccgacgaccctgagaagatgatc 222
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatca 600
||||||||| | || || ||| ||||||||||||
Sbjct: 223 gagccggcgatccgggggaccaagtacgtgatca 256
>gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E18f, mRNA sequence
Length = 618
Score = 95.6 bits (48), Expect = 4e-018
Identities = 206/253 (81%), Gaps = 8/253 (3%)
Strand = Plus / Plus
Query: 891 ctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgcaggcgtacgtggac 950
||||||||||| |||||||| ||| || | |||||||||||| |||||||||||| ||
Sbjct: 9 ctcaagtacctcgacggctccgccaagacgtacgccaacgccgtccaggcgtacgtgcac 68
Query: 951 gtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccgc-gcgtccggccg 1009
|| |||||| |||| ||||||| ||| |||||||||| |||||||| || |||| ||
Sbjct: 69 gtccgcgacaccgccgccgcgcacgtcctcgtcttcgag-gcccccgccgccgccgggcg 127
Query: 1010 ccacctctgcg---ccga--gcgc-gtcctccaccgcgaggacgtcgtccgcatcctcgc 1063
| |||| |||| |||| |||| || |||||||| |||||||| ||| |||||||
Sbjct: 128 ctacctgtgcgtggccgacggcgccgtgctccaccgggaggacgtggtcaccatcctccg 187
Query: 1064 caagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcggaa 1123
|||| ||||||||||||||||| |||| ||||||||| ||| |||||| ||| ||||
Sbjct: 188 caagttcttccccgagtaccccatccccagcaggtgctctgactcggtgaacccgaggaa 247
Query: 1124 gcagccgtacaag 1136
|| ||||||||||
Sbjct: 248 gcggccgtacaag 260
>gb|BQ467242.1|BQ467242 HS03C04r HS Hordeum vulgare subsp. vulgare cDNA clone HS03C04
5-PRIME, mRNA sequence
Length = 561
Score = 85.7 bits (43), Expect = 4e-015
Identities = 96/113 (84%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
||||||||| |||| |||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 451 acgtgatcagagcggtggcggacgccggc---gtgcggcgcgtggtgttcacgtcgtcct 507
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgag 704
|||||||||| |||||||||||| ||| | ||||||| |||| ||||||||
Sbjct: 508 acggcgccgtgcacatggaccccaaccgcagccccgacgccgtgctcgacgag 560
>gb|CA015399.1|CA015399 HT14D04r HT Hordeum vulgare subsp. vulgare cDNA clone HT14D04
5-PRIME, mRNA sequence
Length = 576
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 628 ggcgggtggtgttcacgtcgtccatcggcgccgtgaccatggaccccaagcgcgggcccg 687
|||| |||||||||||||||||| |||||||||| |||||||||||| ||| | ||||
Sbjct: 487 ggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggaccccaaccgcagccccg 546
Query: 688 acgtcgtggtcgacgagtcgtgctggagcg 717
||| |||| |||||||| | ||||||||||
Sbjct: 547 acgccgtgctcgacgaggcctgctggagcg 576
>gb|BM375203.2|BM375203 EBem06_SQ002_K13_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_K13 5', mRNA sequence
Length = 546
Score = 81.8 bits (41), Expect = 6e-014
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 697 tcgacgagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgct 756
||||||| |||||||||||||||||||| | |||| || |||||| ||||||||||||||
Sbjct: 12 tcgacgactcgtgctggagcgacctcgactactgcaagcaaaccaagaactggtactgct 71
Query: 757 acggcaaggcggtggcggagc 777
||| |||| || | |||||||
Sbjct: 72 acgccaagacgatcgcggagc 92
>gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. vulgare cDNA clone HM12I01
5-PRIME, mRNA sequence
Length = 482
Score = 81.8 bits (41), Expect = 6e-014
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 697 tcgacgagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgct 756
||||||| |||||||||||||||||||| | |||| || |||||| ||||||||||||||
Sbjct: 402 tcgacgactcgtgctggagcgacctcgactactgcaagcaaaccaagaactggtactgct 461
Query: 757 acggcaaggcggtggcggagc 777
||| |||| || | |||||||
Sbjct: 462 acgccaagacgatcgcggagc 482
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 397 cagatgacccgaagaacgcgcacctcaaggcgctggacggcgccgccgagcggct 451
|||||||||| |||||||||||||| |||||| |||||||| || ||||||||
Sbjct: 105 cagatgaccccaagaacgcgcacctgtgggcgctcgacggcgcggcggagcggct 159
>gb|CA021049.1|CA021049 HZ38P08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38P08
5-PRIME, mRNA sequence
Length = 465
Score = 81.8 bits (41), Expect = 6e-014
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 697 tcgacgagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgct 756
||||||| |||||||||||||||||||| | |||| || |||||| ||||||||||||||
Sbjct: 269 tcgacgactcgtgctggagcgacctcgactactgcaagcaaaccaagaactggtactgct 328
Query: 757 acggcaaggcggtggcggagc 777
||| |||| || | |||||||
Sbjct: 329 acgccaagacgatcgcggagc 349
>gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01C19V 5', mRNA sequence
Length = 614
Score = 75.8 bits (38), Expect = 4e-012
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||| ||||| |||||||| |||| |||||||||||||||||||| ||| | ||| |
Sbjct: 283 ggctgcgagggcatcttccacgccgcttcccccgtcaccgacgaccctgagaagatgatc 342
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatca 600
||||||||| | || || ||| ||||||||||||
Sbjct: 343 gagccggcgatccgggggaccaagtacgtgatca 376
Score = 48.1 bits (24), Expect = 9e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagca 778
||||||||||||||||| |||| ||||||| |||||
Sbjct: 518 gaactggtactgctacgccaagacggtggccgagca 553
>gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C05V 5', mRNA sequence
Length = 610
Score = 75.8 bits (38), Expect = 4e-012
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||| ||||| |||||||| |||| |||||||||||||||||||| ||| | ||| |
Sbjct: 289 ggctgcgagggcatcttccacgccgcttcccccgtcaccgacgaccctgagaagatgatc 348
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatca 600
||||||||| | || || ||| ||||||||||||
Sbjct: 349 gagccggcgatccgggggaccaagtacgtgatca 382
Score = 42.1 bits (21), Expect = 0.053
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagca 778
||||||| ||||||||| |||| ||||||| |||||
Sbjct: 522 gaactggnactgctacgccaagacggtggccgagca 557
>gb|BI957946.1|BI957946 HVSMEn0012F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012F23f, mRNA sequence
Length = 479
Score = 71.9 bits (36), Expect = 6e-011
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagc 351
|||||||||| ||||||||||||||||| | ||| ||||||| |||||| | || ||||
Sbjct: 77 acgggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagc 136
Query: 352 tgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccgaaga 411
| || ||| | ||||| ||| | ||| | |||||| |||||||||| |||||| ||||||
Sbjct: 137 tcctcctcaacaaggggtacgccgtgcaaggcaccttcaggaaccccgatgacgcgaaga 196
>gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014O07f, mRNA sequence
Length = 821
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
|||| |||| |||| |||||||| |||||||| | ||||||||||||||||||| | |||
Sbjct: 65 gggagcgggaagacggtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtg 124
Query: 348 aagct 352
|||||
Sbjct: 125 aagct 129
>gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P07f, mRNA sequence
Length = 821
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
|||| |||| |||| |||||||| |||||||| | ||||||||||||||||||| | |||
Sbjct: 65 gggagcgggaagacggtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtg 124
Query: 348 aagct 352
|||||
Sbjct: 125 aagct 129
>gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_L07 5', mRNA sequence
Length = 353
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||| ||| |||| |||||||| |||||||| | ||||||||||||||||||| | |||
Sbjct: 43 gggaaaggggagacggtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtg 102
Query: 348 aagct 352
|||||
Sbjct: 103 aagct 107
>gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_M20 5', mRNA sequence
Length = 626
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 698 cgacgagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgcta 757
||||||| | || ||||||||||||||||||||| |||| || | |||||||||||||||
Sbjct: 564 cgacgagacatgttggagcgacctcgagttctgcaagaacacaaagaactggtactgcta 623
>gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C06
5-PRIME, mRNA sequence
Length = 495
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||| |||||||||||||||||| ||| ||||| || | |||||||
Sbjct: 163 aagaacgcgcacctgccggcgctggacggcgccgcggagaggctgcggctgttcaaggcc 222
Query: 468 gatctgctggactacg 483
|| |||||||||||||
Sbjct: 223 gacctgctggactacg 238
>gb|BI958721.1|BI958721 HVSMEn0016F17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016F17f, mRNA sequence
Length = 635
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 390 aggaacccagatgacccgaagaacgcgcacctcaaggcgctggacgg 436
|||||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct: 233 aggaacccagatgacccgcagaatgcacaccttaaggcgctggacgg 279
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 292 acgggcagaccgtgtgcgtgaccggcgcggccgggtacat 331
||||||||||||||||||| |||||||| ||| |||||||
Sbjct: 134 acgggcagaccgtgtgcgtcaccggcgccgccaggtacat 173
>gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M03f, mRNA sequence
Length = 828
Score = 60.0 bits (30), Expect = 2e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||| ||||| |||||||| |||| |||||||| ||||||||||| ||| | ||| |
Sbjct: 290 ggctgcgagggcatcttccacgccgcttcccccgtgaccgacgaccctgagaagatgatc 349
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatca 600
||||||||| | || || ||| ||| ||||||||
Sbjct: 350 gagccggcgatccgggggaccaagtgcgtgatca 383
>gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015P02f, mRNA sequence
Length = 643
Score = 60.0 bits (30), Expect = 2e-007
Identities = 79/94 (84%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||| ||||| |||||||| |||| |||||||| ||||||||||| ||| ||| | |
Sbjct: 432 ggctgcaagggcatcttccacgccgcttcccccgtgaccgacgaccctgag-aaaagatc 490
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatca 600
||||||||| | || || ||| ||||||||||||
Sbjct: 491 gagccggcgatccgggggaccaagtacgtgatca 524
>gb|AV925423.1|AV925423 AV925423 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24c05 5', mRNA sequence
Length = 567
Score = 60.0 bits (30), Expect = 2e-007
Identities = 113/140 (80%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 592 acgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcca 651
|||||||| |||| ||||| || |||||| |||||||| ||||||||||| || |||
Sbjct: 370 acgtgatccacgcagcggcagacgccggc---gtgcggcgcgtggtgttcacctcctcct 426
Query: 652 tcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgct 711
|||||| ||| |||||||||||| || | ||||| |||| |||| ||| ||||||
Sbjct: 427 acggcgctgtgcacatggaccccaatcggaacctcgacgccgtgctcgatgagacgtgct 486
Query: 712 ggagcgacctcgagttctgc 731
|||||||| ||||||||||
Sbjct: 487 ggagcgactacgagttctgc 506
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 256,489
Number of Sequences: 312970
Number of extensions: 256489
Number of successful extensions: 79710
Number of sequences better than 0.5: 122
Number of HSP's better than 0.5 without gapping: 121
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79431
Number of HSP's gapped (non-prelim): 249
length of query: 1520
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1501
effective length of database: 169,188,109
effective search space: 253951351609
effective search space used: 253951351609
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)