BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE214157.3|BE214157 HV_CEb0002H13f Hordeum vulgare seedl... 402 e-111
gb|CV054175.1|CV054175 BNEL107f1 Barley EST endosperm libra... 402 e-111
gb|CV063066.1|CV063066 BNEL86c3 Barley EST endosperm librar... 381 e-104
gb|BI776330.2|BI776330 EBem04_SQ001_K08_R embryo, 12 DPA, n... 377 e-103
gb|CV057862.1|CV057862 BNEL31f4 Barley EST endosperm librar... 365 e-100
gb|CK122370.1|CK122370 BES1824103a12 BES1824 Hordeum vulgar... 363 4e-099
gb|CV063107.1|CV063107 BNEL86g1 Barley EST endosperm librar... 351 1e-095
gb|BI958316.1|BI958316 HVSMEn0014G04f Hordeum vulgare rachi... 333 3e-090
gb|BG300073.1|BG300073 HVSMEb0011F07f Hordeum vulgare seedl... 264 3e-069
gb|AW982197.2|AW982197 HVSMEg0002E02f Hordeum vulgare pre-a... 250 4e-065
gb|CA030421.1|CA030421 HX07A07r HX Hordeum vulgare subsp. v... 250 4e-065
gb|BU987846.1|BU987846 HF15O20r HF Hordeum vulgare subsp. v... 240 4e-062
gb|CV059539.1|CV059539 BNEL49c1 Barley EST endosperm librar... 232 9e-060
gb|BU989665.1|BU989665 HF22F21r HF Hordeum vulgare subsp. v... 228 1e-058
gb|CA030770.1|CA030770 HX08B09r HX Hordeum vulgare subsp. v... 170 3e-041
gb|CA030259.1|CA030259 HX06I17r HX Hordeum vulgare subsp. v... 143 6e-033
gb|CA024897.1|CA024897 HZ50K06r HZ Hordeum vulgare subsp. v... 121 2e-026
gb|CA026624.1|CA026624 HZ56H06r HZ Hordeum vulgare subsp. v... 78 3e-013
gb|CA026625.1|CA026625 HZ56H08r HZ Hordeum vulgare subsp. v... 78 3e-013
emb|AJ234689.1|HVU234689 Hordeum vulgare genomic DNA fragme... 62 2e-008
gb|BI957576.1|BI957576 HVSMEn0010D08f Hordeum vulgare rachi... 54 5e-006
gb|CA024146.1|CA024146 HZ48H20r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|BI948307.1|BI948307 HVSMEl0008P18f Hordeum vulgare spike... 44 0.004
gb|BF624212.2|BF624212 HVSMEa0012L20f Hordeum vulgare seedl... 42 0.017
gb|BF626706.2|BF626706 HVSMEb0001C03f Hordeum vulgare seedl... 42 0.017
gb|BF626775.2|BF626775 HVSMEb0001E22f Hordeum vulgare seedl... 42 0.017
gb|BF628661.2|BF628661 HVSMEb0006P09f Hordeum vulgare seedl... 42 0.017
gb|BG300642.1|BG300642 HVSMEb0017M20f Hordeum vulgare seedl... 42 0.017
gb|BG343487.1|BG343487 HVSMEg0005O08f Hordeum vulgare pre-a... 42 0.017
gb|BF267549.1|BF267549 HV_CEa0018E01f Hordeum vulgare seedl... 42 0.017
gb|BI960333.1|BI960333 HVSMEn0024E04f Hordeum vulgare rachi... 42 0.017
gb|BF620715.3|BF620715 HVSMEc0020K15f Hordeum vulgare seedl... 42 0.017
gb|BG343113.2|BG343113 HVSMEg0002F16f Hordeum vulgare pre-a... 42 0.017
gb|BG343473.2|BG343473 HVSMEg0005N18f Hordeum vulgare pre-a... 42 0.017
gb|BM816369.1|BM816369 HC114C06_SK.ab1 HC Hordeum vulgare s... 42 0.017
gb|CA020306.1|CA020306 HV14O16r HV Hordeum vulgare subsp. v... 42 0.017
gb|CB880463.1|CB880463 HM06J23w HM Hordeum vulgare subsp. v... 42 0.017
gb|AL508967.1|AL508967 AL508967 Hordeum vulgare Barke devel... 40 0.068
gb|BF622830.3|BF622830 HVSMEa0009E09f Hordeum vulgare seedl... 40 0.068
gb|BF065675.1|BF065675 HV_CEb0013F12f Hordeum vulgare seedl... 40 0.068
gb|BF628787.3|BF628787 HVSMEb0008D14f Hordeum vulgare seedl... 40 0.068
gb|BQ740008.1|BQ740008 HC02B10 HC Hordeum vulgare subsp. vu... 40 0.068
gb|BM097757.2|BM097757 EBem04_SQ002_J19_R embryo, 12 DPA, n... 40 0.068
gb|CA016846.1|CA016846 HV05L18u HV Hordeum vulgare subsp. v... 40 0.068
gb|CA017047.1|CA017047 HV05C16u HV Hordeum vulgare subsp. v... 40 0.068
gb|CA017423.1|CA017423 HV05C16r HV Hordeum vulgare subsp. v... 40 0.068
gb|CA017619.1|CA017619 HV05L18r HV Hordeum vulgare subsp. v... 40 0.068
gb|CB859637.1|CB859637 HI11B09w HI Hordeum vulgare subsp. v... 40 0.068
gb|CB882766.1|CB882766 HL02M16w HL Hordeum vulgare subsp. v... 40 0.068
gb|AL506273.1|AL506273 AL506273 Hordeum vulgare Barke devel... 38 0.27
gb|AL507881.1|AL507881 AL507881 Hordeum vulgare Barke devel... 38 0.27
gb|AL510689.1|AL510689 AL510689 Hordeum vulgare Barke devel... 38 0.27
gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedl... 38 0.27
gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedl... 38 0.27
gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedl... 38 0.27
gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedl... 38 0.27
gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-a... 38 0.27
gb|BG367599.1|BG367599 HVSMEi0012O05f Hordeum vulgare 20 DA... 38 0.27
gb|BI947426.1|BI947426 HVSMEl0005H07f Hordeum vulgare spike... 38 0.27
gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 ... 38 0.27
gb|BF267242.3|BF267242 HV_CEa0017F17f Hordeum vulgare seedl... 38 0.27
gb|BM816370.1|BM816370 HC105A09_T3.ab1 HC Hordeum vulgare s... 38 0.27
gb|BM371237.2|BM371237 EBro04_SQ003_O23_R root, 3 week, sal... 38 0.27
gb|BM370142.2|BM370142 EBro08_SQ003_B24_R root, 3 week, dro... 38 0.27
gb|BU983777.1|BU983777 HA31A09r HA Hordeum vulgare subsp. v... 38 0.27
gb|CV054749.1|CV054749 BNEL112h3 Barley EST endosperm libra... 38 0.27
gb|CV056490.1|CV056490 BNEL18C8 Barley EST endosperm librar... 38 0.27
gb|CV061326.1|CV061326 BNEL67e5 Barley EST endosperm librar... 38 0.27
gb|CK123006.1|CK123006 BES1824101l14 BES1824 Hordeum vulgar... 38 0.27
gb|CK125323.1|CK125323 BES1824107l02 BES1824 Hordeum vulgar... 38 0.27
>gb|BE214157.3|BE214157 HV_CEb0002H13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0002H13f, mRNA sequence
Length = 942
Score = 402 bits (203), Expect = e-111
Identities = 423/496 (85%), Gaps = 3/496 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 50 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 109
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 110 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 169
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 170 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 226
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 227 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 286
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 287 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 346
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 347 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 406
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| |||| ||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 407 cctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcgaggtcctcgacg 466
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggtttggtaccctgcttcca 480
|||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||| |
Sbjct: 467 agcgctgctggaccgacatcgactactgcgacaagaacggggtctgggaccctgcttcaa 526
Query: 481 agacgctggcggagaa 496
|||| ||||| |||||
Sbjct: 527 agacactggctgagaa 542
>gb|CV054175.1|CV054175 BNEL107f1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL107f1 5' similar to putative
cinnamoyl-CoA reductase, mRNA sequence
Length = 721
Score = 402 bits (203), Expect = e-111
Identities = 414/484 (85%), Gaps = 3/484 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 112 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 171
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 172 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 231
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 232 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 288
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 289 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 348
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 349 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 408
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 409 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 468
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| |||| ||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 469 cctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcgaggtcctcgacg 528
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggtttggtaccctgcttcca 480
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 529 agcgctgctggaccgacatcgactactgcgacaagaacggggtctggtaccctgcttcaa 588
Query: 481 agac 484
||||
Sbjct: 589 agac 592
>gb|CV063066.1|CV063066 BNEL86c3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86c3 5' similar to putative
cinnamoyl-CoA reductase, mRNA sequence
Length = 715
Score = 381 bits (192), Expect = e-104
Identities = 411/484 (84%), Gaps = 3/484 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 70 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 129
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 130 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 189
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 190 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 246
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 247 acggcgccgtcatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 306
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 307 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 366
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 367 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 426
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| |||| ||||||||||||| |||||| |||||||||||||| ||| ||||||
Sbjct: 427 cctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcgaagtcctcgacg 486
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggtttggtaccctgcttcca 480
|||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct: 487 agcgctgctggaccgacatcgactactgcgacaagaacggngtctggtaccctgcttcaa 546
Query: 481 agac 484
||||
Sbjct: 547 agac 550
>gb|BI776330.2|BI776330 EBem04_SQ001_K08_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_K08 5', mRNA sequence
Length = 585
Score = 377 bits (190), Expect = e-103
Identities = 417/491 (84%), Gaps = 4/491 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 96 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 155
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 156 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 215
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| |||||||| || |
Sbjct: 216 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctgctcg 272
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 273 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 332
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 333 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 392
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 393 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 452
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| |||| ||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 453 cctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcgaggtcctcgacg 512
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaac-ggggtttggtaccctgcttcc 479
|||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 513 agcgctgctggaccgacatcgactactgcgacaagaacgggggtctggtaccctgcttca 572
Query: 480 aagacgctggc 490
||||| |||||
Sbjct: 573 aagacactggc 583
>gb|CV057862.1|CV057862 BNEL31f4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL31f4 5' similar to putative
cinnamoyl-CoA reductase, mRNA sequence
Length = 634
Score = 365 bits (184), Expect = e-100
Identities = 373/435 (85%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 51 ctcggccgcggctacaacgtccgcgcc-ggcgtcctcgaccccgacgacagggcggagac 109
|||| |||||||||| ||||| |||| | ||||||| ||||||| |||| ||| |||||
Sbjct: 120 ctcgcccgcggctactccgtccacgcccgncgtcctcaaccccgatgacaaggccgagac 179
Query: 110 ggaccacctcctcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctg 169
||| |||||||| ||||| | || |||| || ||| ||| || ||||||||| ||
Sbjct: 180 ggagcacctcctggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtg 236
Query: 170 cgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcca 229
||||||||| ||||||||||| |||||| ||| |||||||| ||||| |||||||||||
Sbjct: 237 cgacctcctcgacggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttcca 296
Query: 230 cctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcc 289
|||||| || |||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 297 cctcgcctcgccctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgcc 356
Query: 290 tgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcg 349
|| ||||| |||||||| |||||| ||||||| | |||||||||||| |||||||| ||
Sbjct: 357 ggccgtggaggggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccg 416
Query: 350 ggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcga 409
|||||| |||||||||||| |||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 417 ggtggtggtgacctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcga 476
Query: 410 ggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacggggtttggta 469
|||| |||||||||| |||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 477 ggtcctcgacgagcgctgctggaccgacatcgactactgcgacaagaacggngtctggta 536
Query: 470 ccctgcttccaagac 484
||||||||| |||||
Sbjct: 537 ccctgcttcaaagac 551
>gb|CK122370.1|CK122370 BES1824103a12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A123 5-PRIME, mRNA sequence
Length = 463
Score = 363 bits (183), Expect = 4e-099
Identities = 358/416 (86%), Gaps = 3/416 (0%)
Strand = Plus / Plus
Query: 81 gtcctcgaccccgacgacagggcggagacggaccacctcctcgcgctggggggcggcgcc 140
|||||| ||||||| |||| ||| |||||||| |||||||| ||||| | || |||| |
Sbjct: 17 gtcctcaaccccgatgacaaggccgagacggagcacctcctggcgctcgccgggggcgac 76
Query: 141 ggcgccggccgcctcagcttcttccgctgcgacctcctggacggcgccgcgctgctcgac 200
| ||| ||| || ||||||||| |||||||| || ||||||||||| |||||| |
Sbjct: 77 gaggcc---cgcgtccgcttcttcccgtgcgacctgctcgacggcgccgccatgctcgcc 133
Query: 201 gcggcgcgcgggtgctcgggcgtcttccacctcgcgtcaccctgcaccgtcgaccccgtc 260
|| |||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct: 134 gccgcgcgcggctgctccggcgtcttccacctcgcctcgccctgcaccgtcgaccgcgtc 193
Query: 261 aaggacccccagaatcagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgc 320
||||||||||| ||||| ||||||| || ||||| |||||||| |||||| |||||
Sbjct: 194 ctcgacccccagaaggagctggtggtgccggccgtggaggggacgctcaacgtgctgcgc 253
Query: 321 gcggncaaggacgccggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtc 380
|| | |||||||||||| |||||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 254 gccgccaaggacgccgggggagtgcgccgggtggtggtgacctcgtccgtctccgccgtc 313
Query: 381 gtgcccaaccccgggtggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatc 440
||||||| |||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 314 gtgcccagccccggctggcccgccggcgaggtcctcgacgagcgctgctggaccgacatc 373
Query: 441 gactactgcgagaagaacggggtttggtaccctgcttccaagacgctggcggagaa 496
||||||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 374 gactactgcgacaagaacggggtctggtaccctgcttcaaagacactggctgagaa 429
>gb|CV063107.1|CV063107 BNEL86g1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86g1 5' similar to putative
cinnamoyl-CoA reductase, mRNA sequence
Length = 711
Score = 351 bits (177), Expect = 1e-095
Identities = 402/477 (84%), Gaps = 3/477 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 112 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 171
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 172 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 231
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 232 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 288
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
||||||||| |||||| ||| |||||||| ||||| ||||| ||||||||||| || |
Sbjct: 289 acggcgccggcatgctcgccgccgcgcgcggatgctccggcgtnttccacctcgcctcgc 348
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 349 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 408
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 409 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 468
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| | || ||||||||||||| |||||| |||||||||||||||||| || |||
Sbjct: 469 cctcgtccgtatccgccgtcgtgcccagccccggctggcccgccggcgaggtcctccacg 528
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggtttggtaccctgctt 477
|||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 529 agcgctgctggaccgacatagactactgcgacaagaacggtgtctggtaccctgctt 585
>gb|BI958316.1|BI958316 HVSMEn0014G04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014G04f, mRNA sequence
Length = 666
Score = 333 bits (168), Expect = 3e-090
Identities = 400/478 (83%), Gaps = 3/478 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 70 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 129
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 130 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 189
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 190 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 246
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 247 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 306
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 307 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 366
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 367 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 426
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||||| |||| ||||||||||||| |||||| |||||||||||||||||| || ||
Sbjct: 427 cctcgtccgtctccgccgtcgtgcccagccccggctggcccgccggcgaggtcctcnacn 486
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggtttggtaccctgcttc 478
| |||||||||||||||||||||||||| ||||| ||| |||| |||||||||
Sbjct: 487 aagcctgctggaccgacatcgactactgcgaccagaaccnggtctggtcccctgcttc 544
>gb|BG300073.1|BG300073 HVSMEb0011F07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011F07f, mRNA sequence
Length = 522
Score = 264 bits (133), Expect = 3e-069
Identities = 357/430 (83%), Gaps = 4/430 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 96 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 155
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 156 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 215
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 216 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 272
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 273 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 332
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| |||||||| || ||||| ||||||| || ||||| |
Sbjct: 333 cctgcaccgtcgaccgcgtcctcgacccccataaggagctggtggtgccggccgtggagg 392
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 393 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 452
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggt-ggcccgccggcgaggtcgtcgac 419
|||||||| |||| ||||||||||||| |||| | | |||||||| |||| ||| | |||
Sbjct: 453 cctcgtccgtctccgccgtcgtgcccagcccccgctgggcccgcccgcgaagtccttgac 512
Query: 420 gagcgttgct 429
||||| ||||
Sbjct: 513 gagcgctgct 522
>gb|AW982197.2|AW982197 HVSMEg0002E02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E02f, mRNA sequence
Length = 867
Score = 250 bits (126), Expect = 4e-065
Identities = 379/463 (81%), Gaps = 3/463 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 96 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 155
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 156 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 215
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 216 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 272
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 273 acggcgcctgcatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 332
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| |||||||| || ||||| ||||||| || |||||||
Sbjct: 333 cctgcaccgtcgaccgcgtcctcgacccccaaaaggagctggtggtgccggccgtggaag 392
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 393 ggacgctcaacgtgctgcgcgccgtcaaggacgccgggggagtgcgccgggtggtggtga 452
Query: 361 cctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacg 420
|||||| | |||| ||||| ||||||| |||||| ||| || |||||||||| ||
Sbjct: 453 cctcgtacgtctccgccgttgtgcccagccccggatgggccctcggcgaggtccctcaca 512
Query: 421 agcgttgctggaccgacatcgactactgcgagaagaacggggt 463
|||| || |||||| || |||||| ||| || |||||||||||
Sbjct: 513 agcgctggtggaccaacttcgacttctgggacaagaacggggt 555
>gb|CA030421.1|CA030421 HX07A07r HX Hordeum vulgare subsp. vulgare cDNA clone HX07A07
5-PRIME, mRNA sequence
Length = 436
Score = 250 bits (126), Expect = 4e-065
Identities = 321/386 (83%), Gaps = 3/386 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 54 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 113
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 114 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 173
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| |||||||| || |
Sbjct: 174 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctgctcg 230
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 231 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 290
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 291 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 350
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 351 ggacgctcaacgtgctgcgcgccgccaaggacgccggnggagtgcgccgggtggtggtga 410
Query: 361 cctcgtccatctcggccgtcgtgccc 386
|||||||| |||| ||||||||||||
Sbjct: 411 cctcgtccgtctccgccgtcgtgccc 436
>gb|BU987846.1|BU987846 HF15O20r HF Hordeum vulgare subsp. vulgare cDNA clone HF15O20
5-PRIME, mRNA sequence
Length = 493
Score = 240 bits (121), Expect = 4e-062
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 309 aacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtgacctcgtcc 368
|||||| ||||||| | |||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 15 aacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtgacctcgtcc 74
Query: 369 atctcggccgtcgtgcccaaccccgggtggcccgccggcgaggtcgtcgacgagcgttgc 428
|||| ||||||||||||| |||||| |||||||||||||||||| |||||||||| |||
Sbjct: 75 gtctccgccgtcgtgcccagccccggctggcccgccggcgaggtcctcgacgagcgctgc 134
Query: 429 tggaccgacatcgactactgcgagaagaacggggtttggtaccctgcttccaagacgctg 488
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct: 135 tggaccgacatcgactactgcgacaagaacggggtctggtaccctgcttcaaagacactg 194
Query: 489 gcggagaa 496
|| |||||
Sbjct: 195 gctgagaa 202
>gb|CV059539.1|CV059539 BNEL49c1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL49c1 5' similar to putative
cinnamoyl-CoA reductase, mRNA sequence
Length = 499
Score = 232 bits (117), Expect = 9e-060
Identities = 301/362 (83%), Gaps = 3/362 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| ||| ||| |||||||| |||||
Sbjct: 112 tggtcaccggcgccagcggcttcatcggctccgtgaccgtgcgcctcctcctcgcccgcg 171
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 172 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 231
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| ||||||||||| |
Sbjct: 232 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctcctcg 288
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 289 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 348
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 349 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 408
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
||||||| |||||| ||||||| | |||||||||||| |||||||| |||||||| ||||
Sbjct: 409 ggacgctcaacgtgctgcgcgccgccaaggacgccgggggagtgcgccgggtggtggtga 468
Query: 361 cc 362
||
Sbjct: 469 cc 470
>gb|BU989665.1|BU989665 HF22F21r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F21
5-PRIME, mRNA sequence
Length = 537
Score = 228 bits (115), Expect = 1e-058
Identities = 157/171 (91%)
Strand = Plus / Plus
Query: 326 caaggacgccggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcc 385
|||||||||||| |||||||| |||||||| |||||||||||| |||| |||||||||||
Sbjct: 5 caaggacgccgggggagtgcgccgggtggtggtgacctcgtccgtctccgccgtcgtgcc 64
Query: 386 caaccccgggtggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgacta 445
|| |||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 65 cagccccggctggcccgccggcgaggtcctcgacgagcgctgctggaccgacatcgacta 124
Query: 446 ctgcgagaagaacggggtttggtaccctgcttccaagacgctggcggagaa 496
|||||| ||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 125 ctgcgacaagaacggggtctggtaccctgcttcaaagacactggctgagaa 175
>gb|CA030770.1|CA030770 HX08B09r HX Hordeum vulgare subsp. vulgare cDNA clone HX08B09
5-PRIME, mRNA sequence
Length = 407
Score = 170 bits (86), Expect = 3e-041
Identities = 262/320 (81%), Gaps = 3/320 (0%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 91 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 150
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 151 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 210
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| |||||||| || |
Sbjct: 211 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctgctcg 267
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 268 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 327
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||| |||| ||||||||||| ||||| ||||||| || ||||| |
Sbjct: 328 cctgcaccgtcgaccgcgtcctcgacccccagaaggagctggtggtgccggccgtggagg 387
Query: 301 ggacgctgaacgtggtgcgc 320
||||||| |||||| |||||
Sbjct: 388 ggacgctcaacgtgctgcgc 407
>gb|CA030259.1|CA030259 HX06I17r HX Hordeum vulgare subsp. vulgare cDNA clone HX06I17
5-PRIME, mRNA sequence
Length = 353
Score = 143 bits (72), Expect = 6e-033
Identities = 224/274 (81%), Gaps = 3/274 (1%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 78 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 137
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 138 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 197
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| |||||||| || |
Sbjct: 198 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctgctcg 254
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 255 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 314
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaa 274
||||||||||||||| |||| |||||||||||
Sbjct: 315 cctgcaccgtcgaccgcgtcctcgacccccagaa 348
>gb|CA024897.1|CA024897 HZ50K06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K06
5-PRIME, mRNA sequence
Length = 351
Score = 121 bits (61), Expect = 2e-026
Identities = 201/247 (81%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 108 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 167
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 168 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 227
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
| ||||| | || |||| || ||| ||| || ||||||||| |||||||| || |
Sbjct: 228 tggcgctcgccgggggcgacgaggcc---cgcgtccgcttcttcccgtgcgacctgctcg 284
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||| |||||| ||| |||||||| ||||| ||||||||||||||||| || |
Sbjct: 285 acggcgccgccatgctcgccgccgcgcgcggctgctccggcgtcttccacctcgcctcgc 344
Query: 241 cctgcac 247
|||||||
Sbjct: 345 cctgcac 351
>gb|CA026624.1|CA026624 HZ56H06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56H06
5-PRIME, mRNA sequence
Length = 302
Score = 77.8 bits (39), Expect = 3e-013
Identities = 105/127 (82%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 99 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 158
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 159 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 218
Query: 121 tcgcgct 127
| |||||
Sbjct: 219 tggcgct 225
>gb|CA026625.1|CA026625 HZ56H08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56H08
5-PRIME, mRNA sequence
Length = 200
Score = 77.8 bits (39), Expect = 3e-013
Identities = 105/127 (82%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| || ||| |||||||| |||||
Sbjct: 55 tggtcaccggcgccagcggcttcatcggctccgtgacagtgcgcctcctcctcgcccgcg 114
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| |||||||| |||||||
Sbjct: 115 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggagcacctcc 174
Query: 121 tcgcgct 127
| |||||
Sbjct: 175 tggcgct 181
>emb|AJ234689.1|HVU234689 Hordeum vulgare genomic DNA fragment; clone MWG0973.uni
Length = 218
Score = 61.9 bits (31), Expect = 2e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 3 gtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggc 62
|||||||| | |||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 194 gtcaccggcggcagcggcttcatcggctcctggctcgtccgcctcctcctcgaccgcggc 135
Query: 63 tacaacgtccgcgcc 77
|||| ||||| ||||
Sbjct: 134 tacaccgtccacgcc 120
>gb|BI957576.1|BI957576 HVSMEn0010D08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D08f, mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 5e-006
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctc 31
|||||||||| ||||||||||||||||||||
Sbjct: 69 tggtcaccggcgccagcggcttcatcggctc 99
>gb|CA024146.1|CA024146 HZ48H20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H20
5-PRIME, mRNA sequence
Length = 225
Score = 48.1 bits (24), Expect = 3e-004
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| ||||||||||| |||||||| || ||| |||||||| |||||
Sbjct: 91 tggtcaccggcgccagcggctttatcggctccgtgacagtgcgcctcctcctcgcccgcg 150
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
| ||| ||| | ||||| ||||||| |||| || |||| ||| |||||||| |||||||
Sbjct: 151 gttactccgtncacgccgccgtcctcaaccctgatgacaaggccgagacggagcacctcc 210
Query: 121 tcgcgct 127
| |||||
Sbjct: 211 tggcgct 217
>gb|BI948307.1|BI948307 HVSMEl0008P18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008P18f, mRNA sequence
Length = 1042
Score = 44.1 bits (22), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 124 cgctggggggcggcgccggcgccggc 149
||||||||||||||||||||| ||||
Sbjct: 29 cgctggggggcggcgccggcggcggc 4
>gb|BF624212.2|BF624212 HVSMEa0012L20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012L20f, mRNA sequence
Length = 490
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 94 gggggcggcgccggcgccggc 74
>gb|BF626706.2|BF626706 HVSMEb0001C03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001C03f, mRNA sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 43 gggggcggcgccggcgccggc 23
>gb|BF626775.2|BF626775 HVSMEb0001E22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001E22f, mRNA sequence
Length = 834
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 470 ggcggcgccggcgccggccgc 490
>gb|BF628661.2|BF628661 HVSMEb0006P09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006P09f, mRNA sequence
Length = 709
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 471 ggcggcgccggcgccggccgc 491
>gb|BG300642.1|BG300642 HVSMEb0017M20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017M20f, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 379 ggcggcgccggcgccggccgc 399
>gb|BG343487.1|BG343487 HVSMEg0005O08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005O08f, mRNA sequence
Length = 949
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 478 ccaagacgctggcggagaaggcggcgtgg 506
|||||||| |||||||||||| |||||||
Sbjct: 505 ccaagacggtggcggagaaggaggcgtgg 533
>gb|BF267549.1|BF267549 HV_CEa0018E01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018E01f, mRNA sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 76 gggggcggcgccggcgccggc 56
>gb|BI960333.1|BI960333 HVSMEn0024E04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E04f, mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 80 gcggcgccggcgccggccgcc 100
>gb|BF620715.3|BF620715 HVSMEc0020K15f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020K15f, mRNA sequence
Length = 852
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 36 gcggcgccggcgccggccgcc 56
>gb|BG343113.2|BG343113 HVSMEg0002F16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002F16f, mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 79 gcggcgccggcgccggccgcc 99
>gb|BG343473.2|BG343473 HVSMEg0005N18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005N18f, mRNA sequence
Length = 912
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 75 gggggcggcgccggcgccggc 55
>gb|BM816369.1|BM816369 HC114C06_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C06_SK.ab1 similar to Aldehyde reductase,Hydrogen
dehydrogenase,Alcohol dehydrogenase,Cinnamyl-alcohol
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Cinnamoyl-CoA reductase,Transferred entry:
1.18.99.1,Carbonyl reductase (NADPH),Dihydrokaempferol
4-reductase,, mRNA sequence
Length = 962
Score = 42.1 bits (21), Expect = 0.017
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 467 gtaccctgcttccaagacgctggcggagaaggcggcg 503
||||||||| || ||| |||||||||||||||||||
Sbjct: 389 gtaccctgcctcgaaggtgctggcggagaaggcggcg 425
>gb|CA020306.1|CA020306 HV14O16r HV Hordeum vulgare subsp. vulgare cDNA clone HV14O16
5-PRIME, mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 17 gcggcgccggcgccggccgcc 37
>gb|CB880463.1|CB880463 HM06J23w HM Hordeum vulgare subsp. vulgare cDNA clone HM06J23
3-PRIME, mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 134 cggcgccggcgccggccgcct 154
|||||||||||||||||||||
Sbjct: 122 cggcgccggcgccggccgcct 142
>gb|AL508967.1|AL508967 AL508967 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10F04V 5',
mRNA sequence
Length = 407
Score = 40.1 bits (20), Expect = 0.068
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcctc 155
|||||||||||||||||| |||||
Sbjct: 200 ggcggcgccggcgccggctgcctc 223
>gb|BF622830.3|BF622830 HVSMEa0009E09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009E09f, mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgc 152
||||||||||||||||||||
Sbjct: 46 gcggcgccggcgccggccgc 65
>gb|BF065675.1|BF065675 HV_CEb0013F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013F12f, mRNA sequence
Length = 958
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccg 151
||||||||||||||||||||
Sbjct: 134 ggcggcgccggcgccggccg 115
>gb|BF628787.3|BF628787 HVSMEb0008D14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D14f, mRNA sequence
Length = 870
Score = 40.1 bits (20), Expect = 0.068
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 124 cgctggggggcggcgccggcgccg 147
||||||||||||||| ||||||||
Sbjct: 32 cgctggggggcggcggcggcgccg 9
>gb|BQ740008.1|BQ740008 HC02B10 HC Hordeum vulgare subsp. vulgare cDNA clone HC02B10
similar to NP_565923.1| (NM_129567) putative ABC1
protein; This gene structure is inaccurate, likely due
to discrepancies within overlapping bac sequences. This
will be resolved asap..., mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.068
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 123 gcgctggggggcggcgccggcgcc 146
|||||||||| |||||||||||||
Sbjct: 85 gcgctgggggccggcgccggcgcc 108
>gb|BM097757.2|BM097757 EBem04_SQ002_J19_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_J19 5', mRNA sequence
Length = 438
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 91 ggggcggcgccggcgccggc 110
>gb|CA016846.1|CA016846 HV05L18u HV Hordeum vulgare subsp. vulgare cDNA clone HV05L18
3-PRIME, mRNA sequence
Length = 459
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 328 ggggcggcgccggcgccggc 309
>gb|CA017047.1|CA017047 HV05C16u HV Hordeum vulgare subsp. vulgare cDNA clone HV05C16
3-PRIME, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 328 ggggcggcgccggcgccggc 309
>gb|CA017423.1|CA017423 HV05C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV05C16
5-PRIME, mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 326 ggggcggcgccggcgccggc 345
>gb|CA017619.1|CA017619 HV05L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV05L18
5-PRIME, mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 326 ggggcggcgccggcgccggc 345
>gb|CB859637.1|CB859637 HI11B09w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B09
3-PRIME, mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.068
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 130 ggggcggcgccggcgccggc 149
||||||||||||||||||||
Sbjct: 393 ggggcggcgccggcgccggc 374
>gb|CB882766.1|CB882766 HL02M16w HL Hordeum vulgare subsp. vulgare cDNA clone HL02M16
3-PRIME, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.068
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 123 gcgctggggggcggcgccggcgcc 146
|||||||||| |||||||||||||
Sbjct: 128 gcgctgggggccggcgccggcgcc 151
>gb|AL506273.1|AL506273 AL506273 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02J11T 5',
mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.27
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 131 gggcggcgccggcgccggc 149
|||||||||||||||||||
Sbjct: 338 gggcggcgccggcgccggc 356
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,608
Number of Sequences: 312970
Number of extensions: 124608
Number of successful extensions: 43695
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43484
Number of HSP's gapped (non-prelim): 207
length of query: 507
length of database: 175,134,539
effective HSP length: 18
effective length of query: 489
effective length of database: 169,501,079
effective search space: 82886027631
effective search space used: 82886027631
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)