BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke devel... 367 e-100
gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke devel... 367 e-100
gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 ... 367 e-100
gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, n... 367 e-100
gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, n... 367 e-100
gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hyd... 367 e-100
gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. v... 367 e-100
gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. v... 367 e-100
gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. v... 367 e-100
gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. v... 367 e-100
gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. v... 367 e-100
gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. v... 367 e-100
gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day ger... 359 8e-098
gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, wat... 359 8e-098
gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 ... 345 1e-093
gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke devel... 341 2e-092
gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke devel... 331 2e-089
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 323 4e-087
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 323 4e-087
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 323 4e-087
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 323 4e-087
gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. v... 319 7e-086
gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA li... 315 1e-084
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 315 1e-084
gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. v... 305 1e-081
gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA li... 303 4e-081
gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. v... 289 6e-077
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 276 9e-073
gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA,... 254 3e-066
gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. v... 196 7e-049
gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA li... 194 3e-048
gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA li... 194 3e-048
gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. v... 186 6e-046
gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike... 167 6e-040
gb|BE454713.2|BE454713 HVSMEh0095G06f Hordeum vulgare 5-45 ... 40 0.092
gb|BE602062.2|BE602062 HVSMEh0102E10f Hordeum vulgare 5-45 ... 40 0.092
gb|BI952191.1|BI952191 HVSMEm0004P01f Hordeum vulgare green... 40 0.092
gb|BG414256.1|BG414256 HVSMEk0002D19f Hordeum vulgare testa... 40 0.092
gb|BM371334.2|BM371334 EBma08_SQ002_F10_R maternal, 28 DPA,... 40 0.092
gb|BM442759.2|BM442759 EBro02_SQ001_B18_R root, 3 week, hyd... 40 0.092
gb|BQ760582.1|BQ760582 EBro03_SQ001_M04_R root, 3 week, wat... 40 0.092
gb|BQ764192.1|BQ764192 EBan01_SQ005_K02 _R anther, yellow s... 40 0.092
gb|BQ767782.1|BQ767782 EBro08_SQ009_G23_R root, 3 week, dro... 40 0.092
gb|BU976214.1|BU976214 HA03F12r HA Hordeum vulgare subsp. v... 40 0.092
gb|BU986749.1|BU986749 HF12M18r HF Hordeum vulgare subsp. v... 40 0.092
gb|BU997499.1|BU997499 HI08C20r HI Hordeum vulgare subsp. v... 40 0.092
gb|BU997991.1|BU997991 HI09K07r HI Hordeum vulgare subsp. v... 40 0.092
gb|BU998410.1|BU998410 HI10P13r HI Hordeum vulgare subsp. v... 40 0.092
gb|CA021347.1|CA021347 HZ39N07r HZ Hordeum vulgare subsp. v... 40 0.092
gb|CA025397.1|CA025397 HZ52A20r HZ Hordeum vulgare subsp. v... 40 0.092
gb|CB877017.1|CB877017 HP03E10T HP Hordeum vulgare subsp. v... 40 0.092
gb|BG415572.1|BG415572 HVSMEk0007A18f Hordeum vulgare testa... 38 0.36
gb|BG417691.1|BG417691 HVSMEk0019C10f Hordeum vulgare testa... 38 0.36
gb|BG417695.1|BG417695 HVSMEk0019C16f Hordeum vulgare testa... 38 0.36
gb|BG414824.2|BG414824 HVSMEk0003N17f Hordeum vulgare testa... 38 0.36
gb|BG414898.2|BG414898 HVSMEk0004C15f Hordeum vulgare testa... 38 0.36
gb|BG415337.2|BG415337 HVSMEk0006B15f Hordeum vulgare testa... 38 0.36
gb|BM441137.2|BM441137 EBed02_SQ002_I13_R endosperm, 8 DPA,... 38 0.36
gb|BM099447.2|BM099447 EBes01_SQ003_E10_R embryo sac, 4-6 D... 38 0.36
gb|BM100174.2|BM100174 EBma01_SQ001_G17_R maternal, 4 DPA, ... 38 0.36
gb|BQ757253.1|BQ757253 EBem10_SQ003_H13_R embryo, 2 Day ger... 38 0.36
gb|BQ758611.1|BQ758611 EBma07_SQ002_D10_R maternal, 21 DPA,... 38 0.36
gb|BQ758914.1|BQ758914 EBma07_SQ003_O06_R maternal, 21 DPA,... 38 0.36
gb|BQ759006.1|BQ759006 EBma07_SQ003_B13 _R maternal, 21 DPA... 38 0.36
gb|BQ762918.1|BQ762918 EBro02_SQ006_D17 _R root, 3 week, hy... 38 0.36
gb|BQ762969.1|BQ762969 EBro02_SQ006_P17_R root, 3 week, hyd... 38 0.36
gb|BQ764154.1|BQ764154 EBan01_SQ005_B06_R anther, yellow st... 38 0.36
gb|BU978714.1|BU978714 HA14B04r HA Hordeum vulgare subsp. v... 38 0.36
gb|BU989576.1|BU989576 HF22B22r HF Hordeum vulgare subsp. v... 38 0.36
gb|CA026109.1|CA026109 HZ54M01r HZ Hordeum vulgare subsp. v... 38 0.36
emb|AJ238697.1|HVU238697 Hordeum vulgare mRNA for GPX12Hv, ... 38 0.36
>gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11T 5',
mRNA sequence
Length = 622
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 124 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 183
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 184 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 243
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 244 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 303
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 363
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 416
>gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01V 5',
mRNA sequence
Length = 594
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 137 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 196
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 197 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 256
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 257 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 316
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 317 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 376
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 429
>gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G22f, mRNA sequence
Length = 650
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 119 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 178
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 179 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 238
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 239 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 298
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 299 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 358
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 359 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 411
>gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_N15 5', mRNA sequence
Length = 529
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 125 aaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaagaac 184
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 185 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 244
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 245 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 304
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 305 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 364
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 365 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 417
>gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P19 5', mRNA sequence
Length = 465
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 152 aaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaagaac 211
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 212 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 271
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 272 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 331
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 332 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 391
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 392 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 444
>gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_A04 5', mRNA sequence
Length = 636
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 122 aaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaagaac 181
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 182 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 241
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 242 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 301
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 361
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 414
>gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. vulgare cDNA clone HB11O15
5-PRIME, mRNA sequence
Length = 476
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 108 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 167
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 168 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 227
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 228 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 287
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 288 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 347
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 348 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 400
>gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12B16
5-PRIME, mRNA sequence
Length = 535
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 132 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 191
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 192 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 251
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 252 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 311
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 312 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 371
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 424
>gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06M14
5-PRIME, mRNA sequence
Length = 572
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 67 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 126
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 127 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 186
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 187 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 246
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 247 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 306
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 359
>gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B05
5-PRIME, mRNA sequence
Length = 585
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 94 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 153
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 154 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 213
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 214 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 273
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 274 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 333
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 334 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 386
>gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13I22
5-PRIME, mRNA sequence
Length = 634
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 125 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 184
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 185 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 244
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 245 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 304
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 305 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 364
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 365 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 417
>gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05G17
5-PRIME, mRNA sequence
Length = 533
Score = 367 bits (185), Expect = e-100
Identities = 266/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 168 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 227
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 228 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 287
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 288 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 347
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 348 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 407
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 408 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 460
>gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N07 5', mRNA sequence
Length = 459
Score = 359 bits (181), Expect = 8e-098
Identities = 265/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 67 aaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaagaac 126
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 127 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 186
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 187 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 246
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 247 aagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaag 306
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 atgttcttccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 359
>gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P20 5', mRNA sequence
Length = 524
Score = 359 bits (181), Expect = 8e-098
Identities = 265/293 (90%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 122 aaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaagaac 181
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 182 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 241
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 242 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 301
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 302 aagactggtaaaggcaagaagaaagccctcccggtgaacaaggacaggttcataagcaag 361
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 atgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 414
>gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A22f, mRNA sequence
Length = 958
Score = 345 bits (174), Expect = 1e-093
Identities = 267/297 (89%), Gaps = 1/297 (0%)
Strand = Plus / Minus
Query: 111 aaaaaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaag 170
|||||| |||| |||||||||||||| || || ||||| | |||||| | |||||||||
Sbjct: 503 aaaaagnaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 444
Query: 171 aataataccc-aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcg 229
| || |||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 accaacaccccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgag 384
Query: 230 agccttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggt 289
|| || || || ||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 383 ggcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggt 324
Query: 290 accgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataag 349
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 tccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataag 264
Query: 350 caagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 caagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 207
>gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11u 3',
mRNA sequence
Length = 554
Score = 341 bits (172), Expect = 2e-092
Identities = 264/294 (89%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcag-caccggtcctctctcggtgctcatgatgagcgtcaagaa 172
|||||||| ||||||||||| ||| || || ||| | | |||||| | |||||||||||
Sbjct: 529 aaggaggaggaggagttcagncacgggccccctcnccatcctcatgctcagcgtcaagaa 470
Query: 173 taatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagc 232
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct: 469 caacacccaggtgcttatcaactnccggaacaacaagaagttgcttggtcgcgtgagggc 410
Query: 233 cttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtacc 292
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 409 atttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcc 350
Query: 293 gaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaa 352
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 aaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaa 290
Query: 353 gatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 289 gatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 236
>gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01u 3',
mRNA sequence
Length = 540
Score = 331 bits (167), Expect = 2e-089
Identities = 234/255 (91%), Gaps = 1/255 (0%)
Strand = Plus / Minus
Query: 153 ctcatgatgagcgtcaagaataatacccaggttcttatcaactgcc-ggaacaacaagaa 211
|||||| | ||||||||||| || |||||||| ||||||||||||| |||||||||||||
Sbjct: 497 ctcatgctcagcgtcaagaacaacacccaggtgcttatcaactgcccggaacaacaagaa 438
Query: 212 gttgcttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgttag 271
|||||||||||||||| | || || || || ||||||||||||||||| |||||||| ||
Sbjct: 437 gttgcttggtcgcgtgagggcatttgaccgtcactgcaacatggttctcgagaacgtcag 378
Query: 272 ggagatgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaa 331
|||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 377 ggagatgtggactgaggttccaaagactggtaaaggcaagaagaaggccctcccggtgaa 318
Query: 332 caaggacaggttcataagcaagatgttcctccgtggggattcggtcatcattgtcctcag 391
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 317 caaggacaggttcataagcaagatgttcctccgcggggattcggtcatcatcgtcctcag 258
Query: 392 gaacccgaaatgagt 406
|||||||||||||||
Sbjct: 257 gaacccgaaatgagt 243
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 323 bits (163), Expect = 4e-087
Identities = 259/291 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 127 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 186
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 187 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 246
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 247 tttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggttcca 306
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 307 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 366
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct: 367 atgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatga 417
>gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N23
5-PRIME, mRNA sequence
Length = 461
Score = 323 bits (163), Expect = 4e-087
Identities = 259/291 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 144 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 203
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 204 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 263
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 264 tttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggttcca 323
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 324 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 383
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct: 384 atgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatga 434
>gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21a1 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 629
Score = 323 bits (163), Expect = 4e-087
Identities = 259/291 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 119 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 178
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 179 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 238
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 239 tttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggttcca 298
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 299 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 358
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct: 359 atgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatga 409
>gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46e5 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 643
Score = 323 bits (163), Expect = 4e-087
Identities = 259/291 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 119 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 178
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 179 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 238
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 239 tttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggttcca 298
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 299 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 358
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct: 359 atgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatga 409
>gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
3-PRIME, mRNA sequence
Length = 492
Score = 319 bits (161), Expect = 7e-086
Identities = 206/221 (93%)
Strand = Plus / Minus
Query: 186 cttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcac 245
|||||||||||||||||||||||||||||||||||||||||| | || || || || |||
Sbjct: 491 cttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgtcac 432
Query: 246 tgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaa 305
|||||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||
Sbjct: 431 tgcaacatggttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaa 372
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgc 312
Query: 366 ggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 ggggattcggtcatcatcgtcctcaggaacccgaaatgagt 271
>gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 3', mRNA sequence
Length = 728
Score = 315 bits (159), Expect = 1e-084
Identities = 258/291 (88%)
Strand = Plus / Minus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 533 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 474
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct: 473 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgagagca 414
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 413 tttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggactgaggttcca 354
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 353 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 294
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||| ||||||
Sbjct: 293 atgttcctccgcggcgactcggtcatcattgttctaaggaaccccaaatga 243
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 315 bits (159), Expect = 1e-084
Identities = 258/291 (88%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 101 aaggaggaggaggagttcagcaccgcgcccctgtccctgctcatgatgagcgtcaagaac 160
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 161 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 220
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 221 tttgaccgtcattgcaacatggttctggagaacgttcgggagatgtggactgaggttcca 280
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 281 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 340
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct: 341 atgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatga 391
>gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
3-PRIME, mRNA sequence
Length = 474
Score = 305 bits (154), Expect = 1e-081
Identities = 199/214 (92%)
Strand = Plus / Minus
Query: 193 actgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcactgcaaca 252
||||||||||||||||||||||||||||||||||| | || || || || ||||||||||
Sbjct: 464 actgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgtcactgcaaca 405
Query: 253 tggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaaga 312
||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||||||||
Sbjct: 404 tggttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaaggcaaga 345
Query: 313 agaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggatt 372
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 344 agaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgcggggatt 285
Query: 373 cggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||||| |||||||||||||||||||||||
Sbjct: 284 cggtcatcatcgtcctcaggaacccgaaatgagt 251
>gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 3', mRNA sequence
Length = 628
Score = 303 bits (153), Expect = 4e-081
Identities = 249/281 (88%)
Strand = Plus / Minus
Query: 124 aggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatacccagg 183
|||||||||||||||| || || || |||||||||||||||||||||| ||||||||||
Sbjct: 530 aggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaacaatacccagg 471
Query: 184 ttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggc 243
| ||||||||||||||||||||||||||| | ||||||||| || |||| || || || |
Sbjct: 470 tacttatcaactgccggaacaacaagaagctacttggtcgcatgagagcatttgaccgtc 411
Query: 244 actgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggta 303
| |||||||||||||| ||||||||||||||||||||||| ||||| || ||||| || |
Sbjct: 410 attgcaacatggttctcgagaacgttagggagatgtggactgaggttccaaagactggca 351
Query: 304 aaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctcc 363
|||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct: 350 aaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaagatgttcctcc 291
Query: 364 gtggggattcggtcatcattgtcctcaggaacccgaaatga 404
| || || |||||||||||||| || |||||||| ||||||
Sbjct: 290 gcggcgactcggtcatcattgttctaaggaaccccaaatga 250
>gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
5-PRIME, mRNA sequence
Length = 474
Score = 289 bits (146), Expect = 6e-077
Identities = 198/214 (92%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 193 actgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcactgcaaca 252
||||||||||||||||||||||||||||||||||| | || || || || |||||||||
Sbjct: 11 actgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgt-actgcaaca 69
Query: 253 tggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaaga 312
||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||||||||
Sbjct: 70 tggttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaaggcaaga 129
Query: 313 agaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggatt 372
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 130 agaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgcggggatt 189
Query: 373 cggtcatcattgtcctcaggaacccgaaatgagt 406
|||||||||| |||||||||||||||||||||||
Sbjct: 190 cggtcatcatcgtcctcaggaacccgaaatgagt 223
>gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63H11
5-PRIME, mRNA sequence
Length = 390
Score = 276 bits (139), Expect = 9e-073
Identities = 220/247 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 144 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 203
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 204 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgagagca 263
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || || |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct: 264 tttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggttcca 323
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct: 324 aagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaag 383
Query: 354 atgttcc 360
|||||||
Sbjct: 384 atgttcc 390
>gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_I15 5', mRNA sequence
Length = 393
Score = 254 bits (128), Expect = 3e-066
Identities = 155/164 (94%)
Strand = Plus / Plus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggt 302
||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||
Sbjct: 1 cactgcaacatggttctcgagaacgtcagggagatgtggactgaggttccaaagactggt 60
Query: 303 aaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctc 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctc 120
Query: 363 cgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
|| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 cgcggggattcggtcatcatcgtcctcaggaacccgaaatgagt 164
>gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
5-PRIME, mRNA sequence
Length = 376
Score = 196 bits (99), Expect = 7e-049
Identities = 171/195 (87%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| |||||||||||||| || || ||||| | |||||| | |||||||||||
Sbjct: 182 aaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaac 241
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 242 aacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggca 301
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccg 293
|| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 302 tttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttcca 361
Query: 294 aagaccggtaaaggc 308
||||| |||||||||
Sbjct: 362 aagactggtaaaggc 376
>gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 5', mRNA sequence
Length = 513
Score = 194 bits (98), Expect = 3e-048
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 340 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 399
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct: 400 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgagagca 459
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggac 283
|| || || || |||||||||||||| |||||||||||||||||||||||
Sbjct: 460 tttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggac 509
>gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 5', mRNA sequence
Length = 499
Score = 194 bits (98), Expect = 3e-048
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 114 aaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaat 173
|||||||| ||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 330 aaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaagaac 389
Query: 174 aatacccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcc 233
||||||||||| ||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct: 390 aatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgagagca 449
Query: 234 ttcgatcggcactgcaacatggttcttgagaacgttagggagatgtggac 283
|| || || || |||||||||||||| |||||||||||||||||||||||
Sbjct: 450 tttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggac 499
>gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P01
5-PRIME, mRNA sequence
Length = 396
Score = 186 bits (94), Expect = 6e-046
Identities = 142/158 (89%)
Strand = Plus / Plus
Query: 247 gcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaag 306
||||||||||||| ||||||||| ||||||||||||| ||||| || ||||| || ||||
Sbjct: 11 gcaacatggttctcgagaacgttcgggagatgtggactgaggttccaaagactggcaaag 70
Query: 307 gcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgtg 366
||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |
Sbjct: 71 gcaagaagaaggcccttccagtgaacaaggacaggttcatcagcaagatgttcctccgcg 130
Query: 367 gggattcggtcatcattgtcctcaggaacccgaaatga 404
| || |||||||||||||| || |||||||||||||||
Sbjct: 131 gcgactcggtcatcattgttctaaggaacccgaaatga 168
>gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025B11f, mRNA sequence
Length = 406
Score = 167 bits (84), Expect = 6e-040
Identities = 129/144 (89%)
Strand = Plus / Plus
Query: 261 gagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggct 320
||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1 gagaacgttagggagatgtggactgaggttccaaagactggcaaaggcaagaagaaggcc 60
Query: 321 ctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggattcggtcatc 380
|| || |||||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 61 cttccagtgaacaaggacaggttcatcagcaagatgttcctccgcggcgactcggtcatc 120
Query: 381 attgtcctcaggaacccgaaatga 404
||||| || |||||||| ||||||
Sbjct: 121 attgttctaaggaaccccaaatga 144
>gb|BE454713.2|BE454713 HVSMEh0095G06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095G06f, mRNA sequence
Length = 888
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 32 cgccgccgtctcgccgctgc 51
>gb|BE602062.2|BE602062 HVSMEh0102E10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102E10f, mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 59 cgccgccgtctcgccgctgc 78
>gb|BI952191.1|BI952191 HVSMEm0004P01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0004P01f, mRNA sequence
Length = 894
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 54 cgccgccgtctcgccgctgc 73
>gb|BG414256.1|BG414256 HVSMEk0002D19f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0002D19f, mRNA sequence
Length = 876
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 39 cgccgccgtctcgccgctgc 58
>gb|BM371334.2|BM371334 EBma08_SQ002_F10_R maternal, 28 DPA, no treatment, cv Optic,
EBma08 Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_F10 5', mRNA sequence
Length = 438
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 36 cgccgccgtctcgccgctgc 55
>gb|BM442759.2|BM442759 EBro02_SQ001_B18_R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ001_B18 5', mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 42 cgccgccgtctcgccgctgc 61
>gb|BQ760582.1|BQ760582 EBro03_SQ001_M04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ001_M04 5', mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 37 cgccgccgtctcgccgctgc 56
>gb|BQ764192.1|BQ764192 EBan01_SQ005_K02 _R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_K02 5', mRNA sequence
Length = 74
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 51 cgccgccgtctcgccgctgc 70
>gb|BQ767782.1|BQ767782 EBro08_SQ009_G23_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_G23 5', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 35 cgccgccgtctcgccgctgc 54
>gb|BU976214.1|BU976214 HA03F12r HA Hordeum vulgare subsp. vulgare cDNA clone HA03F12
5-PRIME, mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 45 cgccgccgtctcgccgctgc 64
>gb|BU986749.1|BU986749 HF12M18r HF Hordeum vulgare subsp. vulgare cDNA clone HF12M18
5-PRIME, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 80 cgccgccgtctcgccgctgc 99
>gb|BU997499.1|BU997499 HI08C20r HI Hordeum vulgare subsp. vulgare cDNA clone HI08C20
5-PRIME, mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 22 cgccgccgtctcgccgctgc 41
>gb|BU997991.1|BU997991 HI09K07r HI Hordeum vulgare subsp. vulgare cDNA clone HI09K07
5-PRIME, mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 37 cgccgccgtctcgccgctgc 56
>gb|BU998410.1|BU998410 HI10P13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10P13
5-PRIME, mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 58 cgccgccgtctcgccgctgc 77
>gb|CA021347.1|CA021347 HZ39N07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39N07
5-PRIME, mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cgccgccgtctcgccgctgc 59
||||||||||||||||||||
Sbjct: 36 cgccgccgtctcgccgctgc 55
>gb|CA025397.1|CA025397 HZ52A20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52A20
5-PRIME, mRNA sequence
Length = 330
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cgccgccgccgtctcgccgctgcc 60
||||||||||| ||||||||||||
Sbjct: 98 cgccgccgccgcctcgccgctgcc 121
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,199
Number of Sequences: 312970
Number of extensions: 107199
Number of successful extensions: 28702
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28616
Number of HSP's gapped (non-prelim): 82
length of query: 675
length of database: 175,134,539
effective HSP length: 19
effective length of query: 656
effective length of database: 169,188,109
effective search space: 110987399504
effective search space used: 110987399504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)