BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950160.2.1
         (846 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BJ467937.1|BJ467937  BJ467937 K. Sato unpublished cDNA li...   410   e-113
gb|BM443862.2|BM443862  EBem09_SQ001_M07_R embryo, 1 Day ger...   262   2e-068
gb|BJ467938.1|BJ467938  BJ467938 K. Sato unpublished cDNA li...   254   4e-066
gb|BM444115.1|BM444115  EBem09_SQ004_D08_R embryo, 1 Day ger...   224   4e-057
gb|BM444949.1|BM444949  EBem09_SQ006_P20_R embryo, 1 Day ger...   163   1e-038
gb|BQ664391.1|BQ664391  HV03B24u HV Hordeum vulgare subsp. v...   101   4e-020
gb|AL499948.1|AL499948  AL499948 Hordeum vulgare Barke etiol...    84   9e-015
gb|CK124684.1|CK124684  BES1824109p11 BES1824 Hordeum vulgar...    66   2e-009
gb|AV834161.1|AV834161  AV834161 K. Sato unpublished cDNA li...    48   5e-004
gb|BJ463761.1|BJ463761  BJ463761 K. Sato unpublished cDNA li...    46   0.002
gb|BU986456.1|BU986456  HF11O19r HF Hordeum vulgare subsp. v...    46   0.002
gb|CA024809.1|CA024809  HZ50F23r HZ Hordeum vulgare subsp. v...    46   0.002
gb|BU969156.1|BU969156  HB10L09r BC Hordeum vulgare subsp. v...    40   0.12 
gb|AV834211.1|AV834211  AV834211 K. Sato unpublished cDNA li...    38   0.46 
gb|BF630057.2|BF630057  HVSMEb0007N02f Hordeum vulgare seedl...    38   0.46 
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags30g13 3', mRNA sequence
          Length = 703

 Score =  410 bits (207), Expect = e-113
 Identities = 334/375 (89%), Gaps = 1/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
           |||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 329 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 388

                                                                       
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
           |||||| ||||||||||| ||||| ||||  |||||||||||||| |||||||| |||||
Sbjct: 389 tgaataatccacatagttgtcccagaagcctttgtacttctccatcccaattttcagcca 448

                                                                       
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
           ||||||||  ||||||||||| |||| |||||||||||| || |||||| || |||| ||
Sbjct: 449 tggcttcaagtttccattgtaatgcaatactgcaccttctttaatagtatcaggatcgac 508

                                                                       
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
           |||||||||||| || ||||| ||||||||||| || | || ||||||||||||||||||
Sbjct: 509 agttgtgtagcccagccccaagacatgccattttgggttcagtgcttcaaccaagccata 568

                                                                       
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
           |||||||||||| |||||||||||||| || |||||||| || ||||||||| |||||||
Sbjct: 569 gaaagcaagaagcccaggtggtaaagatccgagcttccacagggtatgatcagcattgcg 628

                                                                       
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 629 ctcctgccaataatgatatatacctgtaacattcttgttcctccattcaacaagatcaag 688

                          
Query: 824 cacgttcataccaaa 838
           ||| |||||||||||
Sbjct: 689 cacattcataccaaa 703
>gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day germination, no treatment, cv
           Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
           EBem09_SQ001_M07 5', mRNA sequence
          Length = 512

 Score =  262 bits (132), Expect = 2e-068
 Identities = 199/220 (90%), Gaps = 1/220 (0%)
 Strand = Plus / Minus

                                                                       
Query: 628 atagtagcaagatccacagttgtgtagccaagtcccaaaacatgccatttgggatccaat 687
           |||||| || |||| |||||||||||||| || ||||| ||||||||||| || | || |
Sbjct: 511 atagtatcaggatcgacagttgtgtagcccagccccaagacatgccattttgggttcagt 452

                                                                       
Query: 688 gcttcaaccaagccatagaaagcaagaagtccaggtggtaaagacccaagcttccataga 747
           ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || 
Sbjct: 451 gcttcaaccaagccatagaaagcaagaagcccaggtggtaaagatccgagcttccacagg 392

                                                                       
Query: 748 gtatgatca-cattgcgctcctgccaataatgatatatgcctgtcacattcttgttcctc 806
           ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 391 gtatgatcagcattgcgctcctgccaataatgatatatacctgtaacattcttgttcctc 332

                                                   
Query: 807 cattcaaccagatcaagcacgttcataccaaatgcccagc 846
           |||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 331 cattcaacaagatcaagcacattcataccaaacgcccagc 292
>gb|BJ467938.1|BJ467938 BJ467938 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags30g14 3', mRNA sequence
          Length = 550

 Score =  254 bits (128), Expect = 4e-066
 Identities = 221/252 (87%)
 Strand = Plus / Plus

                                                                       
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
           |||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 297 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 356

                                                                       
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
           |||||| ||||||||||| ||||| ||||  |||||||||||||| |||||||| |||||
Sbjct: 357 tgaataatccacatagttgtcccagaagcctttgtacttctccatcccaattttcagcca 416

                                                                       
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
           ||||||||  ||||||||||| |||| |||||||||||| || |||||| || |||| ||
Sbjct: 417 tggcttcaagtttccattgtaatgcaatactgcaccttctttaatagtatcaggatcgac 476

                                                                       
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
           |||||||||||| || ||||| ||||||||||| || | || ||||||||||||||||||
Sbjct: 477 agttgtgtagcccagccccaagacatgccattttgggttcagtgcttcaaccaagccata 536

                       
Query: 705 gaaagcaagaag 716
           ||||||||||||
Sbjct: 537 gaaagcaagaag 548
>gb|BM444115.1|BM444115 EBem09_SQ004_D08_R embryo, 1 Day germination, no treatment, cv
           Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
           EBem09_SQ004_D08 5', mRNA sequence
          Length = 464

 Score =  224 bits (113), Expect = 4e-057
 Identities = 150/161 (93%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                       
Query: 687 tgcttcaaccaagccatagaaagcaagaagtccaggtggtaaagacccaagcttccatag 746
           |||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct: 452 tgcttcaaccaagccatagaaagcaagaagcccaggtggtaaagatccgagcttccacag 393

                                                                       
Query: 747 agtatgatca-cattgcgctcctgccaataatgatatatgcctgtcacattcttgttcct 805
            ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 392 ggtatgatcagcattgcgctcctgccaataatgatatatacctgtaacattcttgttcct 333

                                                    
Query: 806 ccattcaaccagatcaagcacgttcataccaaatgcccagc 846
           ||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 332 ccattcaacaagatcaagcacattcataccaaacgcccagc 292
>gb|BM444949.1|BM444949 EBem09_SQ006_P20_R embryo, 1 Day germination, no treatment, cv
           Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
           EBem09_SQ006_P20 5', mRNA sequence
          Length = 417

 Score =  163 bits (82), Expect = 1e-038
 Identities = 116/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                       
Query: 722 gtggtaaagacccaagcttccatagagtatgatca-cattgcgctcctgccaataatgat 780
           |||||||||| || |||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct: 417 gtggtaaagatccgagcttccacagggtatgatcagcattgcgctcctgccaataatgat 358

                                                                       
Query: 781 atatgcctgtcacattcttgttcctccattcaaccagatcaagcacgttcataccaaatg 840
           |||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 357 atatacctgtaacattcttgttcctccattcaacaagatcaagcacattcataccaaacg 298

                 
Query: 841 cccagc 846
           ||||||
Sbjct: 297 cccagc 292
>gb|BQ664391.1|BQ664391 HV03B24u HV Hordeum vulgare subsp. vulgare cDNA clone HV03B24
           3-PRIME, mRNA sequence
          Length = 503

 Score =  101 bits (51), Expect = 4e-020
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                       
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
           |||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 405 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 464

                                                  
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtactt 563
           |||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 465 tgaataatccacatagttgtcccagaagcccttgtactt 503

 Score = 56.0 bits (28), Expect = 2e-006
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 107 caaaacttgttgtaacacatcaataatttaaaatcaattctaca 150
           |||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 44  caaaacttgttgtagcacctcaataattt-aaatcaattctaca 86
>gb|AL499948.1|AL499948 AL499948 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
           subsp. vulgare cDNA clone HK04D14r 3', mRNA sequence
          Length = 520

 Score = 83.8 bits (42), Expect = 9e-015
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                       
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
           |||| ||| ||| ||||||||||| ||||| |||||||||||| | |||| |||||||||
Sbjct: 431 aaaagttcnaatattgatacacattaatcagcgcatgaagcaccgttgaagcaaagggtg 490

                                    
Query: 525 tgaatagtccacatagttatcccaa 549
           |||||| |||||||| || ||||||
Sbjct: 491 tgaataatccacataattgtcccaa 515

 Score = 63.9 bits (32), Expect = 8e-009
 Identities = 42/44 (95%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 107 caaaacttgttgtaacacatcaataatttaaaatcaattctaca 150
           |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 70  caaaacttgttgtaacacctcaataattt-aaatcaattctaca 112
>gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
           MPMGp2010P119 5-PRIME, mRNA sequence
          Length = 787

 Score = 65.9 bits (33), Expect = 2e-009
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 766 cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
           ||||||||||||||||||| |||||  ||||  ||| | |||||||| | ||||||||||
Sbjct: 787 cctgccaataatgatatatncctgtaccatttctgtnc-tccattcancaagatcaagca 729

                                
Query: 826 cgttcataccaaatgcccagc 846
           | ||||| ||||| |||||||
Sbjct: 728 cattcatnccaaacgcccagc 708
>gb|AV834161.1|AV834161 AV834161 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare shoots germination Hordeum vulgare subsp.
           vulgare cDNA clone bags5h22, mRNA sequence
          Length = 714

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 579 gagccatggcttcatatttccattgtagtgca 610
           |||||| ||||||||||| |||||||||||||
Sbjct: 409 gagccaaggcttcatattgccattgtagtgca 440
>gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags30g13 5', mRNA sequence
          Length = 596

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 816 agatcaagcacgttcataccaaatgcccagc 846
           ||||||||||| ||||||||||| |||||||
Sbjct: 592 agatcaagcacattcataccaaacgcccagc 562
>gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. vulgare cDNA clone HF11O19
           5-PRIME, mRNA sequence
          Length = 478

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 580 agccatggcttcatatttccatt 602
           |||||||||||||||||||||||
Sbjct: 196 agccatggcttcatatttccatt 174
>gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F23
           5-PRIME, mRNA sequence
          Length = 154

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 580 agccatggcttcatatttccatt 602
           |||||||||||||||||||||||
Sbjct: 146 agccatggcttcatatttccatt 124
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
           5-PRIME, mRNA sequence
          Length = 684

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 581 gccatggcttcatatttccattgtagtg 608
           ||||||||||||| ||||| ||||||||
Sbjct: 684 gccatggcttcatgtttccgttgtagtg 657
>gb|AV834211.1|AV834211 AV834211 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare shoots germination Hordeum vulgare subsp.
           vulgare cDNA clone bags7a24, mRNA sequence
          Length = 663

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 580 agccatggcttcatatttccattgtagtgca 610
           ||||| || |||||||| |||||||||||||
Sbjct: 464 agccaaggtttcatattaccattgtagtgca 494
>gb|BF630057.2|BF630057 HVSMEb0007N02f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0007N02f, mRNA sequence
          Length = 500

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 827 gttcataccaaatgcccag 845
           |||||||||||||||||||
Sbjct: 416 gttcataccaaatgcccag 434
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,231
Number of Sequences: 312970
Number of extensions: 63231
Number of successful extensions: 17172
Number of sequences better than  0.5: 15
Number of HSP's better than  0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17137
Number of HSP's gapped (non-prelim): 29
length of query: 846
length of database: 175,134,539
effective HSP length: 19
effective length of query: 827
effective length of database: 169,188,109
effective search space: 139918566143
effective search space used: 139918566143
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)