BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 ... 448 e-124
gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. v... 440 e-122
gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. v... 424 e-117
gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. v... 418 e-115
gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. v... 287 4e-076
gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. v... 252 2e-065
gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots... 240 8e-062
gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. v... 240 8e-062
gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. v... 240 8e-062
gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 ... 214 4e-054
gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA li... 212 2e-053
gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedl... 178 2e-043
gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA li... 165 4e-039
gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. v... 155 4e-036
gb|BQ660005.1|BQ660005 HG01J11u HG Hordeum vulgare subsp. v... 111 5e-023
gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. v... 111 5e-023
gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. v... 100 2e-019
gb|AV928911.1|AV928911 AV928911 K. Sato unpublished cDNA li... 74 1e-011
gb|BM097985.2|BM097985 EBpi03_SQ002_D16_R pistil, 4 DPA, no... 42 0.036
gb|BM372122.2|BM372122 EBro03_SQ004_B11_R root, 3 week, wat... 42 0.036
>gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102N13f, mRNA sequence
Length = 729
Score = 448 bits (226), Expect = e-124
Identities = 397/454 (87%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 34 agatggggtccggatctttcctcaaggtgctggccaagaacttcgacgtcctcgccgggc 93
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
|||| | || |||||||||||||||||||| ||||| |||||||| || |||||| ||
Sbjct: 94 cactggtttcgcttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctc 153
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 154 aagtagatgatcagcaatggcttacttactgggtgctgtactcgtttatcactttgtttg 213
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| ||||||||||| || | || ||||||||||| ||| | |||| ||| |||||||
Sbjct: 214 agctcacttttgctccgatacttgaatggcttccattctggccctatggaaaactgttct 273
Query: 342 ttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttg 401
| ||||||||| | ||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 274 tcaactgctggctagtctttccttgcttcaatggtgctgcttatgtttacgagcattttg 333
Query: 402 tgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgaga 461
|||||||||||||||||| ||||||||||| ||||| ||||| | ||||| || || |
Sbjct: 334 cgcggccaatgtttgtgaatcgccaaatagtcaacatctggtacgtcccaaggaaggata 393
Query: 462 agctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggac 521
|| | ||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||
Sbjct: 394 agttgagtaaacctgatgatgtactctcagccgcagagaaatatattgaactaaatggac 453
Query: 522 cagaagcatttgagaagctcatcagcaagtctac 555
||||||||||||||||||| ||||||||||||||
Sbjct: 454 cagaagcatttgagaagctaatcagcaagtctac 487
>gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. vulgare cDNA clone HF14H19
5-PRIME, mRNA sequence
Length = 602
Score = 440 bits (222), Expect = e-122
Identities = 396/454 (87%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 14 agatggggtccggatctttcctcaaggtgctggccaagaacttcgacgtcctcgccgggc 73
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
|||| | || |||||||||||||||||||| ||||| |||||||| || |||||| ||
Sbjct: 74 cactggtttcgcttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctc 133
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 134 aagtagatgatcagcaatggcttacttactgggtgctgtactcgtttatcactttgtttg 193
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| ||||||||||| || | || ||||||||||| ||| | |||| ||| |||||||
Sbjct: 194 agctcacttttgctccgatacttgaatggcttccattctggccctatggaaaactgttct 253
Query: 342 ttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttg 401
| ||||||||| | ||||| ||||| |||||||||||||| ||||||||||| ||||| |
Sbjct: 254 tcaactgctggctagtctttccttgcttcaatggtgctgcttatgtttacgagcatttcg 313
Query: 402 tgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgaga 461
|||||||||||||||||| ||||||||||| ||||| ||||| | ||||| || || |
Sbjct: 314 cgcggccaatgtttgtgaatcgccaaatagtcaacatctggtacgtcccaaggaaggata 373
Query: 462 agctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggac 521
|| | ||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||
Sbjct: 374 agttgagtaaacctgatgatgtactctcagccgcagagaaatatattgaactaaatggac 433
Query: 522 cagaagcatttgagaagctcatcagcaagtctac 555
||||||||||||||||||| ||||||||||||||
Sbjct: 434 cagaagcatttgagaagctaatcagcaagtctac 467
>gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
5-PRIME, mRNA sequence
Length = 546
Score = 424 bits (214), Expect = e-117
Identities = 395/454 (87%), Gaps = 1/454 (0%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 15 agatggggtccggatctttcct-aaggtgctggccaagaacttcgacgtcctcgccgggc 73
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
|||| | || |||||||||||||||||||| ||||| |||||||| || |||||| ||
Sbjct: 74 cactggtttcgcttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctc 133
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 134 aagtagatgatcagcaatggcttacttactgggtgctgtactcgtttatcactttgtttg 193
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| ||||||||||| || | || ||||||||||| ||| | |||| ||| |||||||
Sbjct: 194 agctcacttttgctccgatacttgaatggcttccattctggccctatggaaaactgttct 253
Query: 342 ttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttg 401
| ||||||||| | ||||| ||||| |||||||||||||| ||||||||||| ||||| |
Sbjct: 254 tcaactgctggctagtctttccttgcttcaatggtgctgcttatgtttacgagcatttcg 313
Query: 402 tgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgaga 461
|||||||||||||||||| ||||||||||| ||||| ||||| | ||||| || || |
Sbjct: 314 cgcggccaatgtttgtgaatcgccaaatagtcaacatctggtacgtcccaaggaaggata 373
Query: 462 agctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggac 521
|| | ||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||
Sbjct: 374 agttgagtaaacctgatgatgtactctcagccgcagagaaatatattgaactaaatggac 433
Query: 522 cagaagcatttgagaagctcatcagcaagtctac 555
||||||||||||||||||| ||||||||||||||
Sbjct: 434 cagaagcatttgagaagctaatcagcaagtctac 467
>gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
5-PRIME, mRNA sequence
Length = 574
Score = 418 bits (211), Expect = e-115
Identities = 385/443 (86%)
Strand = Plus / Plus
Query: 113 ggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggccactcatatca 172
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||
Sbjct: 1 ggatctttcctcaaggtgctggccaagaacttcgacgtcctcgccgggccactggtttcg 60
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||||||||||||||||||| ||||| |||||||| || |||||| || |||||||||
Sbjct: 61 cttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctcaagtagatgat 120
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
||||| ||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 121 cagcaatggcttacttactgggtgctgtactcgtttatcactttgtttgagctcactttt 180
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
||||| || | || ||||||||||| ||| | |||| ||| |||||||| |||||||||
Sbjct: 181 gctccgatacttgaatggcttccattctggccctatggaaaactgttcttcaactgctgg 240
Query: 353 ttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtgcggccaatg 412
| ||||| ||||| |||||||||||||| ||||||||||| ||||| | ||||||||||
Sbjct: 241 ctagtctttccttgcttcaatggtgctgcttatgtttacgagcatttcgcgcggccaatg 300
Query: 413 tttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaagctaggtaaa 472
|||||||| ||||||||||| ||||| ||||| | ||||| || || ||| | |||||
Sbjct: 301 tttgtgaatcgccaaatagtcaacatctggtacgtcccaaggaaggataagttgagtaaa 360
Query: 473 tctgatgatgttctgtcagctgcagagagatatattgaacaaaacggaccagaagcattt 532
|||||||||| || ||||| ||||||| ||||||||||| ||| |||||||||||||||
Sbjct: 361 cctgatgatgtactctcagccgcagagaaatatattgaactaaatggaccagaagcattt 420
Query: 533 gagaagctcatcagcaagtctac 555
|||||||| ||||||||||||||
Sbjct: 421 gagaagctaatcagcaagtctac 443
>gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
5-PRIME, mRNA sequence
Length = 530
Score = 287 bits (145), Expect = 4e-076
Identities = 250/285 (87%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 246 agatggggtccggatctttcctcaaggtgctggccaagaacttcgacgtcctcgccgggc 305
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
|||| | || |||||||||||||||||||| ||||| |||||||| || |||||| ||
Sbjct: 306 cactggtttcgcttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctc 365
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 366 aagtagatgatcagcaatggcttacttactgggtgctgtactcgtttatcactttgtttg 425
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| ||||||||||| || | || ||||||||||| ||| | |||| ||| |||||||
Sbjct: 426 agctcacttttgctccgatacttgaatggcttccattctggccctatggaaaactgttct 485
Query: 342 ttaactgctggttggtcttgccttggttcaatggtgctgcctatg 386
| ||||||||| | ||||| ||||| |||||||||||||| ||||
Sbjct: 486 tcaactgctggctagtctttccttgcttcaatggtgctgcttatg 530
>gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M15
5-PRIME, mRNA sequence
Length = 333
Score = 252 bits (127), Expect = 2e-065
Identities = 230/265 (86%)
Strand = Plus / Plus
Query: 102 agatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggc 161
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 69 agatggggtccggatctttcctcaaggtgctggccaagaacttcgacgtcctcgccgggc 128
Query: 162 cactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatc 221
|||| | || |||||||||||||||||||| ||||| |||||||| || |||||| ||
Sbjct: 129 cactggtttcgcttgcttatcctctatatgcctctgtgagagcaattgaaacaaaatctc 188
Query: 222 ctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttg 281
|||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 189 aagtagatgatcagcaatggcttacttactgggtgctgtactcgtttatcactttgtttg 248
Query: 282 agctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttct 341
|||| ||||| ||||| || | || ||||||||||| ||| | |||| ||| |||| ||
Sbjct: 249 agctcactttngctccgatacttgaatggcttccattctggccctatggaaaactgtnct 308
Query: 342 ttaactgctggttggtcttgccttg 366
| ||||||||| | ||||| |||||
Sbjct: 309 tcaactgctggctagtctttccttg 333
>gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03T 5', mRNA sequence
Length = 700
Score = 240 bits (121), Expect = 8e-062
Identities = 355/433 (81%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
||||||||||||||||||||||||||||| | || ||| | ||||| || ||||||||
Sbjct: 114 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 173
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||| ||||| |||||| |||||||||| |||||| ||||
Sbjct: 174 atagtttcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcct 233
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct: 234 atagatgatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgag 293
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || ||||| || |||||||| || | ||| ||||| ||
Sbjct: 294 ctcacctttgctgcagtaattgaatggctccctttttggtcttacggaaaactgtttttc 353
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | || || ||||| || ||||||| || |||||||||
Sbjct: 354 aattgctggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtg 413
Query: 404 cggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaag 463
||||||||| ||||||||| ||| | || ||||| ||||||||||||| ||| || ||
Sbjct: 414 cggccaatgattgtgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaat 473
Query: 464 ctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacca 523
|| |||| | || ||||| | ||||||||| ||| ||| ||||||||||| ||| |
Sbjct: 474 tcagataaacccgacgatgtaatttcagctgcacagaaatacattgaacaaaatggatct 533
Query: 524 gaagcatttgaga 536
||||||||||||
Sbjct: 534 aaagcatttgaga 546
>gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L15
5-PRIME, mRNA sequence
Length = 639
Score = 240 bits (121), Expect = 8e-062
Identities = 355/433 (81%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
||||||||||||||||||||||||||||| | || ||| | ||||| || ||||||||
Sbjct: 110 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 169
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||| ||||| |||||| |||||||||| |||||| ||||
Sbjct: 170 atagtttcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcct 229
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct: 230 atagatgatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgag 289
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || ||||| || |||||||| || | ||| ||||| ||
Sbjct: 290 ctcacctttgctgcagtaattgaatggctccctttttggtcttacggaaaactgtttttc 349
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | || || ||||| || ||||||| || |||||||||
Sbjct: 350 aattgctggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtg 409
Query: 404 cggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaag 463
||||||||| ||||||||| ||| | || ||||| ||||||||||||| ||| || ||
Sbjct: 410 cggccaatgattgtgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaat 469
Query: 464 ctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacca 523
|| |||| | || ||||| | ||||||||| ||| ||| ||||||||||| ||| |
Sbjct: 470 tcagataaacccgacgatgtaatttcagctgcacagaaatacattgaacaaaatggatct 529
Query: 524 gaagcatttgaga 536
||||||||||||
Sbjct: 530 aaagcatttgaga 542
>gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13A06
5-PRIME, mRNA sequence
Length = 558
Score = 240 bits (121), Expect = 8e-062
Identities = 355/433 (81%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
||||||||||||||||||||||||||||| | || ||| | ||||| || ||||||||
Sbjct: 89 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 148
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||| ||||| |||||| |||||||||| |||||| ||||
Sbjct: 149 atagtttcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcct 208
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct: 209 atagatgatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgag 268
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || ||||| || |||||||| || | ||| ||||| ||
Sbjct: 269 ctcacctttgctgcagtaattgaatggctccctttttggtcttacggaaaactgtttttc 328
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | || || ||||| || ||||||| || |||||||||
Sbjct: 329 aattgctggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtg 388
Query: 404 cggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaag 463
||||||||| ||||||||| ||| | || ||||| ||||||||||||| ||| || ||
Sbjct: 389 cggccaatgattgtgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaat 448
Query: 464 ctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggacca 523
|| |||| | || ||||| | ||||||||| ||| ||| ||||||||||| ||| |
Sbjct: 449 tcagataaacccgacgatgtaatttcagctgcacagaaatacattgaacaaaatggatct 508
Query: 524 gaagcatttgaga 536
||||||||||||
Sbjct: 509 aaagcatttgaga 521
>gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087D14f, mRNA sequence
Length = 486
Score = 214 bits (108), Expect = 4e-054
Identities = 266/319 (83%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
||||||||||||||||||||||||||||| | || ||| | ||||| || ||||||||
Sbjct: 164 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 223
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||| ||||| |||||| |||||||||| |||||| ||||
Sbjct: 224 atagtttcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcct 283
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct: 284 atagatgatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgag 343
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || ||||| || || ||||| || | ||| ||||| ||
Sbjct: 344 ctcacctttgctgcagtaattgaatggctccctttntggtcttacggaaaactgtttttc 403
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | || || ||||| || ||||||| || |||||||||
Sbjct: 404 aattgctggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtg 463
Query: 404 cggccaatgtttgtgaacc 422
||||||||| |||||||||
Sbjct: 464 cggccaatgattgtgaacc 482
>gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 5', mRNA sequence
Length = 637
Score = 212 bits (107), Expect = 2e-053
Identities = 302/367 (82%)
Strand = Plus / Plus
Query: 170 tcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagat 229
||||| ||||||||||| ||||| |||||| |||||||||| |||||| |||| |||||
Sbjct: 69 tcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcctatagat 128
Query: 230 gatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaact 289
|||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||| ||
Sbjct: 129 gatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgagctcacc 188
Query: 290 tttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgc 349
|||||| || | || || ||||| || |||||||| || | ||| ||||| || || |||
Sbjct: 189 tttgctgcagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgc 248
Query: 350 tggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtgcggcca 409
|||||||||||||| | || || ||||| || ||||||| || |||||||||||||||
Sbjct: 249 tggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggcca 308
Query: 410 atgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaagctaggt 469
||| ||||||||| ||| | || ||||| ||||||||||||| ||| || || || |
Sbjct: 309 atgattgtgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaattcagat 368
Query: 470 aaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggaccagaagca 529
||| | || ||||| | ||||||||| ||| ||| ||||||||||| ||| | |||||
Sbjct: 369 aaacccgacgatgtaatttcagctgcacagaaatacattgaacaaaatggatctaaagca 428
Query: 530 tttgaga 536
|||||||
Sbjct: 429 tttgaga 435
>gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A15f, mRNA sequence
Length = 551
Score = 178 bits (90), Expect = 2e-043
Identities = 219/262 (83%)
Strand = Plus / Plus
Query: 188 tatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcact 247
||||| |||||| |||||||||| |||||| |||| ||||||||||||| |||||||||
Sbjct: 289 tatgcgtctgttcgagcaatagaaacaaaatctcctatagatgatcagcaatggctcact 348
Query: 248 tactgggtgttgtactcatttatcactttgtttgagctaacttttgctccaattatcgag 307
||||||||||||||||| ||||||||| |||| ||||| || |||||| || | || ||
Sbjct: 349 tactgggtgttgtactcgtttatcactctgttcgagctcacctttgctgcagtaattgaa 408
Query: 308 tggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttgg 367
||||| || |||||||| || | ||| ||||| || || ||||||||||||||||| |
Sbjct: 409 tggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctac 468
Query: 368 ttcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaa 427
|| || ||||| || ||||||| || |||||||||||||||||| ||||||||| |||
Sbjct: 469 tttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaa 528
Query: 428 atagtgaacatatggtatattc 449
| || ||||| ||||||||||
Sbjct: 529 gttgtaaacatctggtatattc 550
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgct 132
|||||||||||||||||||||||||||||
Sbjct: 99 atggggtccggatctttcctcaaggtgct 127
>gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 3', mRNA sequence
Length = 675
Score = 165 bits (83), Expect = 4e-039
Identities = 254/311 (81%)
Strand = Plus / Minus
Query: 226 agatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagct 285
|||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct: 675 agatgatcagcaatggctcacttactgggtgttgtactcgtttatcactctgttcgagct 616
Query: 286 aacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaa 345
|| |||||| || | || || ||||| || |||||||| || | ||| ||||| || ||
Sbjct: 615 cacctttgctgcagtaattgaatggctccctttttggtcttacggaaaactgtttttcaa 556
Query: 346 ctgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtgcg 405
||||||||||||||||| | || || ||||| || ||||||| || |||||||||||
Sbjct: 555 ttgctggttggtcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcg 496
Query: 406 gccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaatgagaagct 465
||||||| ||||||||| ||| | || ||||| ||||||||||||| ||| || ||
Sbjct: 495 gccaatgattgtgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaattc 436
Query: 466 aggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggaccaga 525
|| |||| | || ||||| | ||||||||| ||| ||| ||||||||||| ||| | |
Sbjct: 435 agataaacccgacgatgtaatttcagctgcacagaaatacattgaacaaaatggatctaa 376
Query: 526 agcatttgaga 536
|||||||||||
Sbjct: 375 agcatttgaga 365
>gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
3-PRIME, mRNA sequence
Length = 625
Score = 155 bits (78), Expect = 4e-036
Identities = 147/170 (86%)
Strand = Plus / Minus
Query: 386 gtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtat 445
|||||||| ||||| | |||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 625 gtttacgagcatttcgcgcggccaatgtttgtgaatcgccaaatagtcaacatctggtac 566
Query: 446 attccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatat 505
| ||||| || || ||| | ||||| |||||||||| || ||||| ||||||| ||||
Sbjct: 565 gtcccaaggaaggataagttgagtaaacctgatgatgtactctcagccgcagagaaatat 506
Query: 506 attgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctac 555
||||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 attgaactaaatggaccagaagcatttgagaagctaatcagcaagtctac 456
>gb|BQ660005.1|BQ660005 HG01J11u HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
3-PRIME, mRNA sequence
Length = 574
Score = 111 bits (56), Expect = 5e-023
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 468 gtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggaccagaag 527
||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 557 gtaaacctgatgatgtactctcagccgcagagaaatatattgaactaaatggaccagaag 498
Query: 528 catttgagaagctcatcagcaagtctac 555
||||||||||||| ||||||||||||||
Sbjct: 497 catttgagaagctaatcagcaagtctac 470
>gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
3-PRIME, mRNA sequence
Length = 558
Score = 111 bits (56), Expect = 5e-023
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 468 gtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaacggaccagaag 527
||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||||||||
Sbjct: 524 gtaaacctgatgatgtactctcagccgcagagaaatatattgaactaaatggaccagaag 465
Query: 528 catttgagaagctcatcagcaagtctac 555
||||||||||||| ||||||||||||||
Sbjct: 464 catttgagaagctaatcagcaagtctac 437
>gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17C06
5-PRIME, mRNA sequence
Length = 310
Score = 99.6 bits (50), Expect = 2e-019
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
||||||||||||||||||||||||||||| | || ||| | ||||| || ||||||||
Sbjct: 173 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 232
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||| ||||| |||||| |||||||||| |||||| ||||
Sbjct: 233 atagtttcactcgcttatcctctgtatgcgtctgttcgagcaatagaaacaaaatctcct 292
Query: 224 gtagatgatcagca 237
|||||||||||||
Sbjct: 293 atagatgatcagca 306
>gb|AV928911.1|AV928911 AV928911 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20c18 3', mRNA sequence
Length = 524
Score = 73.8 bits (37), Expect = 1e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 384 atgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggt 443
||||||| || |||||||||||||||||| ||||||||| ||| | || ||||| ||||
Sbjct: 519 atgtttatgagcattttgtgcggccaatgattgtgaaccagcaagttgtaaacatctggt 460
Query: 444 atattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgcagagagat 503
||||||||| ||| || || || |||| | || ||||| | ||||||||| ||| ||
Sbjct: 459 atattccaaaaaaggaaaattcagataaacccgacgatgtaatttcagctgcacagaaat 400
Query: 504 atattgaacaaaacggaccagaagcatttgaga 536
| ||||||||||| ||| | ||||||||||||
Sbjct: 399 acattgaacaaaatggatctaaagcatttgaga 367
>gb|BM097985.2|BM097985 EBpi03_SQ002_D16_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D16 5', mRNA sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.036
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 488 tcagctgcagagagatatattgaacaaaacggaccagaagcatttgaga 536
||||||||| ||| ||| ||||||||||| ||| | ||||||||||||
Sbjct: 71 tcagctgcacagaaatacattgaacaaaatggatctaaagcatttgaga 119
>gb|BM372122.2|BM372122 EBro03_SQ004_B11_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_B11 5', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.036
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 488 tcagctgcagagagatatattgaacaaaacggaccagaagcatttgaga 536
||||||||| ||| ||| ||||||||||| ||| | ||||||||||||
Sbjct: 48 tcagctgcacagaaatacattgaacaaaatggatctaaagcatttgaga 96
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,620
Number of Sequences: 312970
Number of extensions: 94620
Number of successful extensions: 29650
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29601
Number of HSP's gapped (non-prelim): 31
length of query: 1044
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1025
effective length of database: 169,188,109
effective search space: 173417811725
effective search space used: 173417811725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)