BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917194.1|AV917194 AV917194 K. Sato unpublished cDNA li... 151 3e-035
gb|BQ458826.1|BQ458826 HA04B17r HA Hordeum vulgare subsp. v... 151 3e-035
gb|BQ656545.1|BQ656545 HA04B17u HA Hordeum vulgare subsp. v... 151 3e-035
gb|BU985820.1|BU985820 HF08L16r HF Hordeum vulgare subsp. v... 151 3e-035
gb|BU995569.1|BU995569 HM10K10r HM Hordeum vulgare subsp. v... 151 3e-035
gb|CB879942.1|CB879942 HM05A07w HM Hordeum vulgare subsp. v... 151 3e-035
gb|CB881728.1|CB881728 HM10L09w HM Hordeum vulgare subsp. v... 151 3e-035
gb|BM099601.2|BM099601 EBes01_SQ003_L13_R embryo sac, 4-6 D... 147 5e-034
gb|AJ462863.1|AJ462863 AJ462863 S00002 Hordeum vulgare subs... 121 3e-026
gb|AJ462864.1|AJ462864 AJ462864 S00002 Hordeum vulgare subs... 78 4e-013
gb|AU089916.1|AU089916 AU089916 Hordeum vulgare subsp. vulg... 42 0.023
gb|AU090122.1|AU090122 AU090122 Hordeum vulgare subsp. vulg... 42 0.023
gb|AU090129.1|AU090129 AU090129 Hordeum vulgare subsp. vulg... 42 0.023
gb|BE411486.1|BE411486 ISC006.B03F990621 ITEC ISC Barley Le... 42 0.023
gb|BG300002.1|BG300002 HVSMEa0022P06f Hordeum vulgare seedl... 42 0.023
gb|BE194820.2|BE194820 HVSMEh0087B06f Hordeum vulgare 5-45 ... 42 0.023
gb|BI947568.1|BI947568 HVSMEl0005O18f Hordeum vulgare spike... 42 0.023
gb|BI954208.1|BI954208 HVSMEm0016J22f Hordeum vulgare green... 42 0.023
gb|BF267621.1|BF267621 HV_CEa0018H01f Hordeum vulgare seedl... 42 0.023
gb|BF261883.2|BF261883 HV_CEa0002H19f Hordeum vulgare seedl... 42 0.023
gb|BF263810.2|BF263810 HV_CEa0007L19f Hordeum vulgare seedl... 42 0.023
gb|BF264436.2|BF264436 HV_CEa0009G18f Hordeum vulgare seedl... 42 0.023
gb|BF265989.2|BF265989 HV_CEa0013N20f Hordeum vulgare seedl... 42 0.023
gb|BF267046.2|BF267046 HV_CEa0016M16f Hordeum vulgare seedl... 42 0.023
gb|BE519895.2|BE519895 HV_CEb0021K01f Hordeum vulgare seedl... 42 0.023
gb|BF065224.2|BF065224 HV_CEb0024G03f Hordeum vulgare seedl... 42 0.023
gb|BF629314.3|BF629314 HVSMEb0010M13f Hordeum vulgare seedl... 42 0.023
gb|BF264437.3|BF264437 HV_CEa0009G19f Hordeum vulgare seedl... 42 0.023
gb|BF266368.3|BF266368 HV_CEa0014P05f Hordeum vulgare seedl... 42 0.023
gb|BE214702.3|BE214702 HV_CEb0004E11f Hordeum vulgare seedl... 42 0.023
gb|AV909607.1|AV909607 AV909607 K. Sato unpublished cDNA li... 42 0.023
gb|AV910126.1|AV910126 AV910126 K. Sato unpublished cDNA li... 42 0.023
gb|AV911502.1|AV911502 AV911502 K. Sato unpublished cDNA li... 42 0.023
gb|AV925754.1|AV925754 AV925754 K. Sato unpublished cDNA li... 42 0.023
gb|AV933447.1|AV933447 AV933447 K. Sato unpublished cDNA li... 42 0.023
gb|AV934014.1|AV934014 AV934014 K. Sato unpublished cDNA li... 42 0.023
gb|AV934355.1|AV934355 AV934355 K. Sato unpublished cDNA li... 42 0.023
gb|AV935901.1|AV935901 AV935901 K. Sato unpublished cDNA li... 42 0.023
gb|AV936265.1|AV936265 AV936265 K. Sato unpublished cDNA li... 42 0.023
gb|AV936928.1|AV936928 AV936928 K. Sato unpublished cDNA li... 42 0.023
gb|BJ447077.1|BJ447077 BJ447077 K. Sato unpublished cDNA li... 42 0.023
gb|BJ448281.1|BJ448281 BJ448281 K. Sato unpublished cDNA li... 42 0.023
gb|BJ449894.1|BJ449894 BJ449894 K. Sato unpublished cDNA li... 42 0.023
gb|BJ450473.1|BJ450473 BJ450473 K. Sato unpublished cDNA li... 42 0.023
gb|BJ450480.1|BJ450480 BJ450480 K. Sato unpublished cDNA li... 42 0.023
gb|BJ450932.1|BJ450932 BJ450932 K. Sato unpublished cDNA li... 42 0.023
gb|BJ451173.1|BJ451173 BJ451173 K. Sato unpublished cDNA li... 42 0.023
gb|BJ451301.1|BJ451301 BJ451301 K. Sato unpublished cDNA li... 42 0.023
gb|BJ451758.1|BJ451758 BJ451758 K. Sato unpublished cDNA li... 42 0.023
gb|BJ452048.1|BJ452048 BJ452048 K. Sato unpublished cDNA li... 42 0.023
gb|BJ452518.1|BJ452518 BJ452518 K. Sato unpublished cDNA li... 42 0.023
gb|BJ452846.1|BJ452846 BJ452846 K. Sato unpublished cDNA li... 42 0.023
gb|BJ453714.1|BJ453714 BJ453714 K. Sato unpublished cDNA li... 42 0.023
gb|BJ455082.1|BJ455082 BJ455082 K. Sato unpublished cDNA li... 42 0.023
gb|BJ456000.1|BJ456000 BJ456000 K. Sato unpublished cDNA li... 42 0.023
gb|BJ457895.1|BJ457895 BJ457895 K. Sato unpublished cDNA li... 42 0.023
gb|BJ457903.1|BJ457903 BJ457903 K. Sato unpublished cDNA li... 42 0.023
gb|BJ458317.1|BJ458317 BJ458317 K. Sato unpublished cDNA li... 42 0.023
gb|BJ458443.1|BJ458443 BJ458443 K. Sato unpublished cDNA li... 42 0.023
gb|BJ459254.1|BJ459254 BJ459254 K. Sato unpublished cDNA li... 42 0.023
gb|BJ460065.1|BJ460065 BJ460065 K. Sato unpublished cDNA li... 42 0.023
gb|BJ460394.1|BJ460394 BJ460394 K. Sato unpublished cDNA li... 42 0.023
gb|BJ461255.1|BJ461255 BJ461255 K. Sato unpublished cDNA li... 42 0.023
gb|BJ469132.1|BJ469132 BJ469132 K. Sato unpublished cDNA li... 42 0.023
gb|BJ469997.1|BJ469997 BJ469997 K. Sato unpublished cDNA li... 42 0.023
gb|BJ470042.1|BJ470042 BJ470042 K. Sato unpublished cDNA li... 42 0.023
gb|BJ470529.1|BJ470529 BJ470529 K. Sato unpublished cDNA li... 42 0.023
gb|BJ470570.1|BJ470570 BJ470570 K. Sato unpublished cDNA li... 42 0.023
gb|BJ470613.1|BJ470613 BJ470613 K. Sato unpublished cDNA li... 42 0.023
gb|BJ470875.1|BJ470875 BJ470875 K. Sato unpublished cDNA li... 42 0.023
gb|BJ471002.1|BJ471002 BJ471002 K. Sato unpublished cDNA li... 42 0.023
gb|BJ471170.1|BJ471170 BJ471170 K. Sato unpublished cDNA li... 42 0.023
gb|BJ471460.1|BJ471460 BJ471460 K. Sato unpublished cDNA li... 42 0.023
gb|BJ471708.1|BJ471708 BJ471708 K. Sato unpublished cDNA li... 42 0.023
gb|BJ471802.1|BJ471802 BJ471802 K. Sato unpublished cDNA li... 42 0.023
gb|BJ472762.1|BJ472762 BJ472762 K. Sato unpublished cDNA li... 42 0.023
gb|BJ472887.1|BJ472887 BJ472887 K. Sato unpublished cDNA li... 42 0.023
gb|BJ473188.1|BJ473188 BJ473188 K. Sato unpublished cDNA li... 42 0.023
gb|BJ473271.1|BJ473271 BJ473271 K. Sato unpublished cDNA li... 42 0.023
gb|BJ473803.1|BJ473803 BJ473803 K. Sato unpublished cDNA li... 42 0.023
gb|BJ474052.1|BJ474052 BJ474052 K. Sato unpublished cDNA li... 42 0.023
gb|BJ474298.1|BJ474298 BJ474298 K. Sato unpublished cDNA li... 42 0.023
gb|BJ474345.1|BJ474345 BJ474345 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475146.1|BJ475146 BJ475146 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475324.1|BJ475324 BJ475324 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475376.1|BJ475376 BJ475376 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475424.1|BJ475424 BJ475424 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475777.1|BJ475777 BJ475777 K. Sato unpublished cDNA li... 42 0.023
gb|BJ475849.1|BJ475849 BJ475849 K. Sato unpublished cDNA li... 42 0.023
gb|BJ476732.1|BJ476732 BJ476732 K. Sato unpublished cDNA li... 42 0.023
gb|BJ477047.1|BJ477047 BJ477047 K. Sato unpublished cDNA li... 42 0.023
gb|BQ463667.1|BQ463667 HG01B02r HG Hordeum vulgare subsp. v... 42 0.023
gb|BQ468312.1|BQ468312 HP01N22T HP Hordeum vulgare subsp. v... 42 0.023
gb|BQ661926.1|BQ661926 HP01N22w HP Hordeum vulgare subsp. v... 42 0.023
gb|BI777873.2|BI777873 EBro07_SQ001_A10_R root, 3 week, red... 42 0.023
gb|BQ758646.1|BQ758646 EBma07_SQ002_K08_R maternal, 21 DPA,... 42 0.023
gb|BU970536.1|BU970536 HB14P02r BC Hordeum vulgare subsp. v... 42 0.023
gb|BU970910.1|BU970910 HB16A16r BC Hordeum vulgare subsp. v... 42 0.023
gb|BU994617.1|BU994617 HM07K08r HM Hordeum vulgare subsp. v... 42 0.023
gb|CA031462.1|CA031462 HX10A20r HX Hordeum vulgare subsp. v... 42 0.023
gb|CA031467.1|CA031467 HX10B03r HX Hordeum vulgare subsp. v... 42 0.023
gb|CB876319.1|CB876319 HX10O22w HX Hordeum vulgare subsp. v... 42 0.023
gb|CB876325.1|CB876325 HX10P05w HX Hordeum vulgare subsp. v... 42 0.023
gb|CB877005.1|CB877005 HP03D13T HP Hordeum vulgare subsp. v... 42 0.023
gb|CB879667.1|CB879667 HP03D13w HP Hordeum vulgare subsp. v... 42 0.023
gb|CB880148.1|CB880148 HM05K08w HM Hordeum vulgare subsp. v... 42 0.023
gb|AU090132.2|AU090132 AU090132 Hordeum vulgare subsp. vulg... 42 0.023
gb|AU089909.1|AU089909 AU089909 Hordeum vulgare subsp. vulg... 40 0.089
gb|BE411641.1|BE411641 ISC007.G02F990714 ITEC ISC Barley Le... 40 0.089
gb|BE411763.1|BE411763 ISC009.A06F990809 ITEC ISC Barley Le... 40 0.089
gb|AL508989.1|AL508989 AL508989 Hordeum vulgare Barke devel... 40 0.089
gb|BG343660.2|BG343660 HVSMEg0006C14f Hordeum vulgare pre-a... 40 0.089
gb|BJ457312.1|BJ457312 BJ457312 K. Sato unpublished cDNA li... 40 0.089
gb|BJ458799.1|BJ458799 BJ458799 K. Sato unpublished cDNA li... 40 0.089
gb|BM375547.2|BM375547 EBem06_SQ003_K19_R embryo, 21 DPA, n... 40 0.089
gb|BU995861.1|BU995861 HM11J18r HM Hordeum vulgare subsp. v... 40 0.089
gb|BU996696.1|BU996696 HM14H07r HM Hordeum vulgare subsp. v... 40 0.089
gb|CB881055.1|CB881055 HM08K06w HM Hordeum vulgare subsp. v... 40 0.089
gb|CV060431.1|CV060431 BNEL58a7 Barley EST endosperm librar... 40 0.089
gb|AU089919.2|AU089919 AU089919 Hordeum vulgare subsp. vulg... 40 0.089
>gb|AV917194.1|AV917194 AV917194 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8k04 5', mRNA sequence
Length = 515
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Plus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 160 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 219
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 220 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 279
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 caactggaagaccaaggagggaggccccaagtgcccctag 319
>gb|BQ458826.1|BQ458826 HA04B17r HA Hordeum vulgare subsp. vulgare cDNA clone HA04B17
5-PRIME, mRNA sequence
Length = 514
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Plus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 203 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 262
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 263 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 322
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 caactggaagaccaaggagggaggccccaagtgcccctag 362
>gb|BQ656545.1|BQ656545 HA04B17u HA Hordeum vulgare subsp. vulgare cDNA clone HA04B17
3-PRIME, mRNA sequence
Length = 515
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Minus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 312 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 253
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 252 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 193
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 192 caactggaagaccaaggagggaggccccaagtgcccctag 153
>gb|BU985820.1|BU985820 HF08L16r HF Hordeum vulgare subsp. vulgare cDNA clone HF08L16
5-PRIME, mRNA sequence
Length = 517
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Plus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 209 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 268
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 269 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 328
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 caactggaagaccaaggagggaggccccaagtgcccctag 368
>gb|BU995569.1|BU995569 HM10K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM10K10
5-PRIME, mRNA sequence
Length = 587
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Plus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 186 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 245
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 246 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 305
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 306 caactggaagaccaaggagggaggccccaagtgcccctag 345
>gb|CB879942.1|CB879942 HM05A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM05A07
3-PRIME, mRNA sequence
Length = 589
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Minus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 403 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 344
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 343 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 284
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 caactggaagaccaaggagggaggccccaagtgcccctag 244
>gb|CB881728.1|CB881728 HM10L09w HM Hordeum vulgare subsp. vulgare cDNA clone HM10L09
3-PRIME, mRNA sequence
Length = 602
Score = 151 bits (76), Expect = 3e-035
Identities = 139/160 (86%)
Strand = Plus / Minus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 402 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 343
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 342 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 283
Query: 490 caactggaagaccaagcggggaggccccaagtgcccctag 529
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 282 caactggaagaccaaggagggaggccccaagtgcccctag 243
>gb|BM099601.2|BM099601 EBes01_SQ003_L13_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_L13 5', mRNA sequence
Length = 362
Score = 147 bits (74), Expect = 5e-034
Identities = 137/158 (86%)
Strand = Plus / Plus
Query: 370 gcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaagtgctgcgc 429
||||||||||| |||| |||| ||||| ||||||| || |||| ||||||||||||
Sbjct: 205 gcggtgctcggggacgcagtacaagaaggcgtgcctgacctactgcaacaagtgctgcgc 264
Query: 430 ggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaa 489
| ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 265 cacctgcctctgcgtcccgccgggcacctacggcaacaagggcgcctgcccctgctacaa 324
Query: 490 caactggaagaccaagcggggaggccccaagtgcccct 527
|||||||||||||||| ||||||||||||||||||||
Sbjct: 325 caactggaagaccaaggagggaggccccaagtgcccct 362
>gb|AJ462863.1|AJ462863 AJ462863 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200057E02F1, mRNA sequence
Length = 420
Score = 121 bits (61), Expect = 3e-026
Identities = 118/137 (86%)
Strand = Plus / Plus
Query: 394 gaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccggg 453
|||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||
Sbjct: 71 gaagccgtgcctcttcttctgcaacaagtgctgcaacacctgcctgtgcgtgccgtcggg 130
Query: 454 cacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggagg 513
| ||||||| ||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct: 131 cttctacggccacaagtacgagtgcccctgctacaacaactggaagaccaaggagggacg 190
Query: 514 ccccaagtgcccctagt 530
|||||||||||| ||||
Sbjct: 191 ccccaagtgcccttagt 207
>gb|AJ462864.1|AJ462864 AJ462864 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200063B06F1, mRNA sequence
Length = 180
Score = 77.8 bits (39), Expect = 4e-013
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccctagt 530
|||||||||||||||||||||||||||||| |||| ||||||||||||| ||||
Sbjct: 13 tgcccctgctacaacaactggaagaccaaggagggacgccccaagtgcccttagt 67
>gb|AU089916.1|AU089916 AU089916 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_113, mRNA sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 366 cagcctcccgccccacgagtgcggc 342
>gb|AU090122.1|AU090122 AU090122 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_104, mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 207 cagcctcccgccccacgagtgcggc 231
>gb|AU090129.1|AU090129 AU090129 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_113, mRNA sequence
Length = 415
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 207 cagcctcccgccccacgagtgcggc 231
>gb|BE411486.1|BE411486 ISC006.B03F990621 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC006.B03, mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 26 cagcctcccgccccacgagtgcggc 50
>gb|BG300002.1|BG300002 HVSMEa0022P06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022P06f, mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 568 cagcctcccgccccacgagtgcggc 592
>gb|BE194820.2|BE194820 HVSMEh0087B06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087B06f, mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 162 cagcctcccgccccacgagtgcggc 186
>gb|BI947568.1|BI947568 HVSMEl0005O18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005O18f, mRNA sequence
Length = 979
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 332 cagcctcccgccccacgagtgcggc 356
>gb|BI954208.1|BI954208 HVSMEm0016J22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016J22f, mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 563 cagcctcccgccccacgagtgcggc 587
>gb|BF267621.1|BF267621 HV_CEa0018H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018H01f, mRNA sequence
Length = 819
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 472 cagcctcccgccccacgagtgcggc 448
>gb|BF261883.2|BF261883 HV_CEa0002H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002H19f, mRNA sequence
Length = 815
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 563 cagcctcccgccccacgagtgcggc 587
>gb|BF263810.2|BF263810 HV_CEa0007L19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007L19f, mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 550 cagcctcccgccccacgagtgcggc 574
>gb|BF264436.2|BF264436 HV_CEa0009G18f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009G18f, mRNA sequence
Length = 845
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 564 cagcctcccgccccacgagtgcggc 588
>gb|BF265989.2|BF265989 HV_CEa0013N20f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013N20f, mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 237 cagcctcccgccccacgagtgcggc 261
>gb|BF267046.2|BF267046 HV_CEa0016M16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016M16f, mRNA sequence
Length = 758
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 565 cagcctcccgccccacgagtgcggc 589
>gb|BE519895.2|BE519895 HV_CEb0021K01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021K01f, mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 564 cagcctcccgccccacgagtgcggc 588
>gb|BF065224.2|BF065224 HV_CEb0024G03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024G03f, mRNA sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 489 cagcctcccgccccacgagtgcggc 465
>gb|BF629314.3|BF629314 HVSMEb0010M13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010M13f, mRNA sequence
Length = 742
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 554 cagcctcccgccccacgagtgcggc 578
>gb|BF264437.3|BF264437 HV_CEa0009G19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009G19f, mRNA sequence
Length = 868
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 529 cagcctcccgccccacgagtgcggc 553
>gb|BF266368.3|BF266368 HV_CEa0014P05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014P05f, mRNA sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 270 cagcctcccgccccacgagtgcggc 294
>gb|BE214702.3|BE214702 HV_CEb0004E11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004E11f, mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 56 cagcctcccgccccacgagtgcggc 80
>gb|AV909607.1|AV909607 AV909607 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13g08 5', mRNA sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 264 cagcctcccgccccacgagtgcggc 288
>gb|AV910126.1|AV910126 AV910126 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3d20 5', mRNA sequence
Length = 165
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 51 cagcctcccgccccacgagtgcggc 75
>gb|AV911502.1|AV911502 AV911502 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13g08 3', mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 432 cagcctcccgccccacgagtgcggc 408
>gb|AV925754.1|AV925754 AV925754 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25k19 5', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 251 cagcctcccgccccacgagtgcggc 275
>gb|AV933447.1|AV933447 AV933447 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6p02 5', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 257 cagcctcccgccccacgagtgcggc 281
>gb|AV934014.1|AV934014 AV934014 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baall09 5', mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 233 cagcctcccgccccacgagtgcggc 257
>gb|AV934355.1|AV934355 AV934355 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8f20 5', mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 165 cagcctcccgccccacgagtgcggc 189
>gb|AV935901.1|AV935901 AV935901 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6p02 3', mRNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 460 cagcctcccgccccacgagtgcggc 436
>gb|AV936265.1|AV936265 AV936265 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10l09 3', mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 450 cagcctcccgccccacgagtgcggc 426
>gb|AV936928.1|AV936928 AV936928 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8f20 3', mRNA sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 447 cagcctcccgccccacgagtgcggc 423
>gb|BJ447077.1|BJ447077 BJ447077 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15p09 5', mRNA sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 266 cagcctcccgccccacgagtgcggc 290
>gb|BJ448281.1|BJ448281 BJ448281 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19f08 5', mRNA sequence
Length = 552
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 205 cagcctcccgccccacgagtgcggc 229
>gb|BJ449894.1|BJ449894 BJ449894 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27c17 5', mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 91 cagcctcccgccccacgagtgcggc 115
>gb|BJ450473.1|BJ450473 BJ450473 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29m17 5', mRNA sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 320 cagcctcccgccccacgagtgcggc 344
>gb|BJ450480.1|BJ450480 BJ450480 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29n04 5', mRNA sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 128 cagcctcccgccccacgagtgcggc 152
>gb|BJ450932.1|BJ450932 BJ450932 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32a11 5', mRNA sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 406 cagcctcccgccccacgagtgcggc 430
>gb|BJ451173.1|BJ451173 BJ451173 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33a01 5', mRNA sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 92 cagcctcccgccccacgagtgcggc 116
>gb|BJ451301.1|BJ451301 BJ451301 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33h19 5', mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 150 cagcctcccgccccacgagtgcggc 174
>gb|BJ451758.1|BJ451758 BJ451758 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36f02 5', mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 198 cagcctcccgccccacgagtgcggc 222
>gb|BJ452048.1|BJ452048 BJ452048 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37i15 5', mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 331 cagcctccagccccacgagtgcggc 355
|||||||| ||||||||||||||||
Sbjct: 232 cagcctcccgccccacgagtgcggc 256
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,632
Number of Sequences: 312970
Number of extensions: 98632
Number of successful extensions: 27526
Number of sequences better than 0.5: 120
Number of HSP's better than 0.5 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27393
Number of HSP's gapped (non-prelim): 124
length of query: 658
length of database: 175,134,539
effective HSP length: 19
effective length of query: 639
effective length of database: 169,188,109
effective search space: 108111201651
effective search space used: 108111201651
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)