BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949673.2.1
(636 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedl... 131 3e-029
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 131 3e-029
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 131 3e-029
gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachi... 129 1e-028
gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedl... 127 5e-028
gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike... 127 5e-028
gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedl... 109 1e-022
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 96 2e-018
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 96 2e-018
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 96 2e-018
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 96 2e-018
gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. v... 94 7e-018
gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedl... 92 3e-017
gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA li... 90 1e-016
gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA li... 90 1e-016
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 86 2e-015
gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA,... 86 2e-015
gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. v... 86 2e-015
gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, dro... 82 3e-014
gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. v... 80 1e-013
gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachi... 78 4e-013
gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA li... 76 2e-012
gb|BQ761045.1|BQ761045 EBro04_SQ001_P08a_R root, 3 week, sa... 66 2e-009
gb|BI947290.1|BI947290 HVSMEl0005A16f Hordeum vulgare spike... 62 2e-008
gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachi... 60 9e-008
gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedl... 56 1e-006
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 56 1e-006
gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots... 54 6e-006
gb|CX662371.1|CX662371 EST 159 Expressed sequences from Bar... 52 2e-005
gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day ger... 46 0.001
gb|AL509635.1|AL509635 AL509635 Hordeum vulgare Barke devel... 40 0.086
gb|AL510922.1|AL510922 AL510922 Hordeum vulgare Barke devel... 40 0.086
gb|BE602616.3|BE602616 HVSMEh0100I13f Hordeum vulgare 5-45 ... 40 0.086
gb|BE213985.3|BE213985 HV_CEb0001N07f Hordeum vulgare seedl... 40 0.086
gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. v... 40 0.086
gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. v... 40 0.086
gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. v... 40 0.086
gb|BQ661990.1|BQ661990 HR01B24u HR Hordeum vulgare subsp. v... 40 0.086
gb|BM097022.2|BM097022 EBpi07_SQ002_C11_R pistil, 12 DPA, n... 40 0.086
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 40 0.086
gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. v... 40 0.086
gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. v... 40 0.086
gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. v... 40 0.086
gb|CK124014.1|CK124014 BES1824106h23 BES1824 Hordeum vulgar... 40 0.086
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 38 0.34
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 38 0.34
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 38 0.34
>gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005J24f, mRNA sequence
Length = 595
Score = 131 bits (66), Expect = 3e-029
Identities = 165/198 (83%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || |||||||| ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 451 gccgaccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtg 392
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| ||||||||||||||||||| |||||||| || |||||||| ||| |||| |||||
Sbjct: 391 caccgccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctc 332
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgctt 614
|| ||| ||||||||| |||||||||||| |||||||| |||| ||||| || |||||
Sbjct: 331 ggcgtcctggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgctt 272
Query: 615 gcccagcgacgtgctgat 632
| | |||||| ||||||
Sbjct: 271 cctcggcgacgagctgat 254
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 131 bits (66), Expect = 3e-029
Identities = 165/198 (83%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || |||||||| ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 253 gccgaccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtg 194
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| ||||||||||||||||||| |||||||| || |||||||| ||| |||| |||||
Sbjct: 193 ccccgccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctc 134
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgctt 614
|| ||| ||||||||| |||||||||||| |||||||| |||| ||||| || |||||
Sbjct: 133 ggcgtcctggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgctt 74
Query: 615 gcccagcgacgtgctgat 632
| | |||||| ||||||
Sbjct: 73 cctcggcgacgagctgat 56
Score = 77.8 bits (39), Expect = 4e-013
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| |||||||||| |||||||||| ||| || |||||| |||| || |||| ||
Sbjct: 486 ctgccggcgacgtcgatgacgaagcggtccctcacgtcgttcttctccagccgctcgacc 427
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || || |||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 426 gccgtgttcacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcccc 367
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 366 gcgaagtccagcatcgcctggca 344
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 131 bits (66), Expect = 3e-029
Identities = 165/198 (83%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || |||||||| ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 268 gccgaccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtg 209
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| ||||||||||||||||||| |||||||| || |||||||| ||| |||| |||||
Sbjct: 208 ccccgccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctc 149
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgctt 614
|| ||| ||||||||| |||||||||||| |||||||| |||| ||||| || |||||
Sbjct: 148 ggcgtcctggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgctt 89
Query: 615 gcccagcgacgtgctgat 632
| | |||||| ||||||
Sbjct: 88 cctcggcgacgagctgat 71
Score = 95.6 bits (48), Expect = 2e-018
Identities = 120/144 (83%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 502 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 443
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 442 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 383
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 382 cgcgaagtccagcatcgcctggca 359
>gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003A09f, mRNA sequence
Length = 482
Score = 129 bits (65), Expect = 1e-028
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||| ||| ||| ||||||| ||||| |||||||| ||||||| ||||| | ||||||
Sbjct: 196 accagctgccccntcggcttcagcagctccagcaggggcacgatcgggtgccccgccgac 137
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||
Sbjct: 136 accgtgtcgatgatgccgtccatcgtgcccgccgccgccttcatttgctcggggtcttgg 77
Query: 565 ctgaccaggaacgcgtcggc 584
||||||| ||||||||||||
Sbjct: 76 ctgaccaagaacgcgtcggc 57
>gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022N15f, mRNA sequence
Length = 787
Score = 127 bits (64), Expect = 5e-028
Identities = 157/188 (83%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||||||| ||||||||||| | ||| |||||||| ||||||| ||||| | ||||||
Sbjct: 619 accatctgccccatcggcttcatcagttccagcagtggcacgagcgggtgccccgccgac 560
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| || |||||||| ||| |||| ||||||| ||| ||
Sbjct: 559 accgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctcggcgtcctgg 500
Query: 565 ctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagcgac 624
||||||| |||||||||||| |||||||| |||| ||||| || ||||| | | |||||
Sbjct: 499 ctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggcgac 440
Query: 625 gtgctgat 632
| ||||||
Sbjct: 439 gagctgat 432
>gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A06f, mRNA sequence
Length = 994
Score = 127 bits (64), Expect = 5e-028
Identities = 157/188 (83%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||||||| ||||||||||| | ||| |||||||| ||||||| ||||| | ||||||
Sbjct: 388 accatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccgccgac 329
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| || |||||||| ||| |||| ||||||| ||| ||
Sbjct: 328 accgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctcggcgtcctgg 269
Query: 565 ctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagcgac 624
||||||| |||||||||||| |||||||| |||| ||||| || ||||| | | |||||
Sbjct: 268 ctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggcgac 209
Query: 625 gtgctgat 632
| ||||||
Sbjct: 208 gagctgat 201
Score = 42.1 bits (21), Expect = 0.022
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 288 gacctccacatccgcggtgatcccgtgctcgccggcaaagtcgagcatggcctggca 344
|||||| || ||||||||||| ||||||| || || ||||| ||||| ||||||||
Sbjct: 544 gacctcgacgtccgcggtgatgccgtgcttccccgcgaagtccagcatcgcctggca 488
>gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D12f, mRNA sequence
Length = 694
Score = 109 bits (55), Expect = 1e-022
Identities = 104/119 (87%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 467 gcaggtccagcagcggcacgacagggtggtcg-gccgacaccgtgtcgatgacgccgtcc 525
|||| |||||||| ||||||| |||||| | ||||||||||||||||||| |||||||
Sbjct: 694 gcagttccagcaggggcacgatcgggtggccccgccgacaccgtgtcgatgatgccgtcc 635
Query: 526 aaggtgcccgccgccgccctcatctgctcggggtcgcggctgaccaggaacgcgtcggc 584
| ||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 634 atcgtgcccgccgccgccttcatttgctcggggtcttggctgaccaagaacgcgtcggc 576
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 95.6 bits (48), Expect = 2e-018
Identities = 120/144 (83%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 258 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 199
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 198 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 139
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 138 cgcgaagtccagcatcgcctggca 115
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 95.6 bits (48), Expect = 2e-018
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 360 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 419
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 420 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 479
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 480 cgcgaagtccagcatcgcctggca 503
Score = 50.1 bits (25), Expect = 9e-005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || ||||| || ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 594 gccgaccaccaccatttgccccatcggctttatcagctccagcaggggcacgagcgggtg 653
Query: 495 gtcggccgacaccgtgt 511
| |||||||||||||
Sbjct: 654 ccccgccgacaccgtgt 670
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 95.6 bits (48), Expect = 2e-018
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 282 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 341
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 342 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 401
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 402 cgcgaagtccagcatcgcctggca 425
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 95.6 bits (48), Expect = 2e-018
Identities = 114/136 (83%)
Strand = Plus / Plus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || |||||||| ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 378 gccgaccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtg 437
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| ||||||||||||||||||| |||||||| || |||||||| ||| |||| |||||
Sbjct: 438 ccccgccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctc 497
Query: 555 ggggtcgcggctgacc 570
|| ||| ||||||||
Sbjct: 498 ggcgtcctggctgacc 513
Score = 95.6 bits (48), Expect = 2e-018
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 144 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 203
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 204 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 263
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 264 cgcgaagtccagcatcgcctggca 287
>gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B18
5-PRIME, mRNA sequence
Length = 480
Score = 93.7 bits (47), Expect = 7e-018
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 153 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 94
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| ||||||||| || ||||||||||| ||||||| ||
Sbjct: 93 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttccc 34
Query: 321 ggcaaagtcgagcatggcctggc 343
|| ||||| ||||| |||||||
Sbjct: 33 cgcgaagtccagcatcgcctggc 11
>gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006J13f, mRNA sequence
Length = 864
Score = 91.7 bits (46), Expect = 3e-017
Identities = 107/126 (84%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 460 ggcttgagcaggtccagcagcggcacgacagggtggtcggccgacaccgtgtcgatgacg 519
||||| ||||| |||||||| ||||||| ||||| | ||||||||||||| |||| |
Sbjct: 240 ggcttcagcagctccagcaggggcacgatcgggtgccccgccgacaccgtgtaaatgatg 181
Query: 520 ccgtccaaggtgcccgccgcc-gccctcatctgctcggggtcgcggctgaccaggaacgc 578
||||||| |||||||||||| ||| |||| ||||||||||| ||||||||| ||||||
Sbjct: 180 ccgtccatcgtgcccgccgccagccttcatttgctcggggtcttggctgaccaagaacgc 121
Query: 579 gtcggc 584
||||||
Sbjct: 120 gtcggc 115
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 368 tcccggccacgcgcttcccgccg 390
|||||||||||||||| ||||||
Sbjct: 332 tcccggccacgcgcttgccgccg 310
>gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 5', mRNA sequence
Length = 497
Score = 89.7 bits (45), Expect = 1e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| || || ||||||||||| || |||| ||
Sbjct: 229 gctgccggcgacgtcgatgacgaagcggtatctcacgtcgttcctctccagccgctcgac 170
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc-tcgc 319
|| |||||||||||||||||| ||||||||| || || |||||||| |||||| ||||
Sbjct: 169 cgccgtattgacgtagtccatcttgacgacctcgacgtcggcggtgatgccgtgcttcgc 110
Query: 320 cggcaaagtcgagcatggcctggca 344
| || ||||| ||||| ||||||||
Sbjct: 109 c-gcgaagtccagcatcgcctggca 86
>gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 3', mRNA sequence
Length = 573
Score = 89.7 bits (45), Expect = 1e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| || || ||||||||||| || |||| ||
Sbjct: 363 gctgccggcgacgtcgatgacgaagcggtatctcacgtcgttcctctccagccgctcgac 422
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc-tcgc 319
|| |||||||||||||||||| ||||||||| || || |||||||| |||||| ||||
Sbjct: 423 cgccgtattgacgtagtccatcttgacgacctcgacgtcggcggtgatgccgtgcttcgc 482
Query: 320 cggcaaagtcgagcatggcctggca 344
| || ||||| ||||| ||||||||
Sbjct: 483 c-gcgaagtccagcatcgcctggca 506
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 85.7 bits (43), Expect = 2e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
|||||||||||||||| || |||||||| ||||||| | |||||| |||||||||||||
Sbjct: 157 gccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcgggg 98
Query: 559 tcgcggctgaccaggaacgcgtc 581
|| ||||| ||||||||| ||||
Sbjct: 97 tcccggctcaccaggaactcgtc 75
Score = 63.9 bits (32), Expect = 6e-009
Identities = 128/160 (80%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
||||||||||| ||||| ||||||||||| | ||| |||||| || | || |||| ||
Sbjct: 455 gctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgagccgctcgag 396
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| | |||||||| ||||||||||| ||||||| |
Sbjct: 395 cgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccgtgctttgc 336
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccg 360
|| || || |||||||||||||| |||| || |||||||
Sbjct: 335 cgcgaattccagcatggcctggcagtccctgatgccgccg 296
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 85.7 bits (43), Expect = 2e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
|||||||||||||||| || |||||||| ||||||| | |||||| |||||||||||||
Sbjct: 398 gccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcgggg 457
Query: 559 tcgcggctgaccaggaacgcgtc 581
|| ||||| ||||||||| ||||
Sbjct: 458 tcccggctcaccaggaactcgtc 480
Score = 63.9 bits (32), Expect = 6e-009
Identities = 128/160 (80%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
||||||||||| ||||| ||||||||||| | ||| |||||| || | || |||| ||
Sbjct: 100 gctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgagccgctcgag 159
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| | |||||||| ||||||||||| ||||||| |
Sbjct: 160 cgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccgtgctttgc 219
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccg 360
|| || || |||||||||||||| |||| || |||||||
Sbjct: 220 cgcgaattccagcatggcctggcagtccctgatgccgccg 259
>gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_P23 5', mRNA sequence
Length = 568
Score = 85.7 bits (43), Expect = 2e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
|||||||||||||||| || |||||||| ||||||| | |||||| |||||||||||||
Sbjct: 454 gccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcgggg 395
Query: 559 tcgcggctgaccaggaacgcgtc 581
|| ||||| ||||||||| ||||
Sbjct: 394 tcccggctcaccaggaactcgtc 372
>gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O19
5-PRIME, mRNA sequence
Length = 595
Score = 85.7 bits (43), Expect = 2e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
|||||||||||||||| || |||||||| ||||||| | |||||| |||||||||||||
Sbjct: 458 gccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcgggg 399
Query: 559 tcgcggctgaccaggaacgcgtc 581
|| ||||| ||||||||| ||||
Sbjct: 398 tcccggctcaccaggaactcgtc 376
>gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G19 5', mRNA sequence
Length = 421
Score = 81.8 bits (41), Expect = 3e-014
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || |||||||| ||||||||||| | ||| |||||||| ||||||| |||||
Sbjct: 327 gccgaccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtg 268
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgc 539
| ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 267 ccccgccgacaccgtgtcgatgatgccgtccatcgtccccgccgc 223
Score = 56.0 bits (28), Expect = 1e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||||||| ||| ||||||||| |||||||||||| |||||||| |||| ||||
Sbjct: 122 tcatttgctcggcgtcctggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcct 63
Query: 605 cgtcccgcttgcccagcgacgtgctgat 632
| || ||||| | | |||||| ||||||
Sbjct: 62 cctcgcgcttcctcggcgacgagctgat 35
>gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11L08
3-PRIME, mRNA sequence
Length = 276
Score = 79.8 bits (40), Expect = 1e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| |||||||||||||| || |||||| | || || |||| ||
Sbjct: 144 gctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttttccagccgctcgac 203
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgct 316
|| || ||||||||||||||| ||||||||| || ||||||||||| |||||||
Sbjct: 204 cgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgct 259
>gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011B06f, mRNA sequence
Length = 1173
Score = 77.8 bits (39), Expect = 4e-013
Identities = 129/159 (81%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||| || ||||| || |||||||| || | ||| |||||||| ||||||| |||||
Sbjct: 397 gccgaccaccaccatatgccccatcggtttcatcagctccagcagtggcacgagcgggtg 338
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| ||||||||||||||||||| || ||||| || ||||| || || |||| |||||
Sbjct: 337 ccccgccgacaccgtgtcgatgatgctgtccatcgtccccgcagcagctttcatttgctc 278
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|| ||| ||||||||| |||||||||||| | ||||||
Sbjct: 277 ggcgtcctggctgaccaagaacgcgtcggcgcagaggcg 239
>gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 3', mRNA sequence
Length = 222
Score = 75.8 bits (38), Expect = 2e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
|||||||||||||||| || |||||||| ||||||| | | |||| |||||||||||||
Sbjct: 129 gccgacaccgtgtcgaggatgccgtccatggtgcccacggtcgcctgcatctgctcgggg 188
Query: 559 tcgcggctgaccaggaac 576
|| ||||| |||||||||
Sbjct: 189 tcccggctcaccaggaac 206
>gb|BQ761045.1|BQ761045 EBro04_SQ001_P08a_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_P08a 5', mRNA sequence
Length = 80
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||||||| ||||||||||| | ||| |||||||| ||||||| ||||| | ||||||
Sbjct: 74 accatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccgccgac 15
Query: 505 accgtgtcgatga 517
|||||||||||||
Sbjct: 14 accgtgtcgatga 2
>gb|BI947290.1|BI947290 HVSMEl0005A16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A16f, mRNA sequence
Length = 1005
Score = 61.9 bits (31), Expect = 2e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 454 cccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgacaccgtgtcg 513
|||||||| || | ||| |||||||| ||||||| ||| || | |||||||||||||||
Sbjct: 380 cccatcggtttcatcagttccagcagtggcacgagaggatgccccgccgacaccgtgtcg 321
Query: 514 atgacgccgtccaaggtgcccgccgccgccctcat 548
|||| |||||||| ||| || ||||| ||| ||||
Sbjct: 320 atgatgccgtccatggtcccggccgcagccttcat 286
>gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L07f, mRNA sequence
Length = 643
Score = 60.0 bits (30), Expect = 9e-008
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 507 cgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcggct 566
||||||||||| | ||||| ||||||||||||||| |||| |||||||||| ||||
Sbjct: 473 cgtgtcgatgatactgtccatggtgcccgccgccgcattcatttgctcggggtattggct 414
Query: 567 gaccaggaacgcgtcggc 584
||||| ||||| ||||||
Sbjct: 413 gaccaagaacgagtcggc 396
>gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006E02f, mRNA sequence
Length = 602
Score = 56.0 bits (28), Expect = 1e-006
Identities = 148/188 (78%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||||||| || ||||| || | ||| |||| ||| ||||||| ||||| | || |||
Sbjct: 513 accatctgcccgatcggtttcatcagctccatcagtggcacgagcgggtgccccgctgac 454
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
|| |||||||||| |||||||| || |||| || || |||| ||||||| ||| ||
Sbjct: 453 acagtgtcgatgatgccgtccatcgtcgccgcagcagcattcatgtgctcggcgtcctgg 394
Query: 565 ctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagcgac 624
||||||| |||||||||||| || ||||| |||| ||||| || ||||| | | |||||
Sbjct: 393 ctgaccaagaacgcgtcggctccaaggcgctcgagcgcctcctcgcgcttcctcggcgac 334
Query: 625 gtgctgat 632
| ||||||
Sbjct: 333 gagctgat 326
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 56.0 bits (28), Expect = 1e-006
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
||||||||||| ||||| ||||||||||| | ||| |||||| || | | |||| ||
Sbjct: 232 gctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgacccgctcgag 173
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| | |||||||| ||||||||||| ||||||| |
Sbjct: 172 cgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccgtgctttgc 113
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccg 360
|| || || |||||||||||||| |||| || |||||||
Sbjct: 112 cgcgaattccagcatggcctggcagtccctgatgccgccg 73
>gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01P08u 3', mRNA sequence
Length = 248
Score = 54.0 bits (27), Expect = 6e-006
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||| ||||| |||||||||||||| || |||||| |||| || |||| ||
Sbjct: 166 gctgccggcgangtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcgac 225
Query: 261 ggcggtattgacgtagtccatc 282
|| || |||||||||||||||
Sbjct: 226 cgccgtgttgacgtagtccatc 247
>gb|CX662371.1|CX662371 EST 159 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P159 5', mRNA sequence
Length = 512
Score = 52.0 bits (26), Expect = 2e-005
Identities = 118/149 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
||||||||||| ||||| || |||||||| | ||| |||||| || | || |||| ||
Sbjct: 309 gctgcccgcgatgtcgatgacaaagcggtagcggacgtcgttcttcgcgagccgctcgag 250
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| | |||||||| ||||||||||| ||||||| |
Sbjct: 249 cgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatnccgtgctttgc 190
Query: 321 ggcaaagtcgagcatggcctggcactccc 349
|| || || |||||||||||||| ||||
Sbjct: 189 cgcgaattccagcatggcctggcagtccc 161
>gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_K03 5', mRNA sequence
Length = 118
Score = 46.1 bits (23), Expect = 0.001
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 208 gcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatggcggta 267
|||||||||| |||||||||||||| || |||||| |||| || |||| | || ||
Sbjct: 92 gcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcaaccgccgtg 33
Query: 268 ttgacgtagtccatc 282
|||||||||||||||
Sbjct: 32 ttgacgtagtccatc 18
>gb|AL509635.1|AL509635 AL509635 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02G17u 3',
mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 243 ttgctcccggcgacgtcgacgacgaagcggta 274
>gb|AL510922.1|AL510922 AL510922 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06G20u 3',
mRNA sequence
Length = 474
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 169 ttgctcccggcgacgtcgacgacgaagcggta 200
>gb|BE602616.3|BE602616 HVSMEh0100I13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100I13f, mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 108 ttgctcccggcgacgtcgacgacgaagcggta 77
>gb|BE213985.3|BE213985 HV_CEb0001N07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001N07f, mRNA sequence
Length = 276
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 231 ttgctcccggcgacgtcgacgacgaagcggta 262
>gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01F04
3-PRIME, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 118 ttgctcccggcgacgtcgacgacgaagcggta 149
>gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03H06
3-PRIME, mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 118 ttgctcccggcgacgtcgacgacgaagcggta 149
>gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. vulgare cDNA clone HM04O09
3-PRIME, mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 241 ttgctcccggcgacgtcgacgacgaagcggta 272
>gb|BQ661990.1|BQ661990 HR01B24u HR Hordeum vulgare subsp. vulgare cDNA clone HR01B24
3-PRIME, mRNA sequence
Length = 133
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 21 ttgctcccggcgacgtcgacgacgaagcggta 52
>gb|BM097022.2|BM097022 EBpi07_SQ002_C11_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_C11 5', mRNA sequence
Length = 322
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 78 ttgctcccggcgacgtcgacgacgaagcggta 47
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.086
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 209 cgacgtcgacaacgaagcggtacctgac 236
||||||||| |||||||||||||||||
Sbjct: 454 cgacgtcgatgacgaagcggtacctgac 427
>gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. vulgare cDNA clone HI08G13
3-PRIME, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 162 ttgctcccggcgacgtcgacgacgaagcggta 193
>gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I05
3-PRIME, mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 139 ttgctcccggcgacgtcgacgacgaagcggta 170
>gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G11
3-PRIME, mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 139 ttgctcccggcgacgtcgacgacgaagcggta 170
>gb|CK124014.1|CK124014 BES1824106h23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H236 5-PRIME, mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.086
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 199 ttgctgcccgcgacgtcgacaacgaagcggta 230
||||| || ||||||||||| |||||||||||
Sbjct: 279 ttgctcccggcgacgtcgacgacgaagcggta 248
>gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 5', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 208 gcgacgtcgacaacgaagcggta 230
||||||||||| |||||||||||
Sbjct: 349 gcgacgtcgacgacgaagcggta 327
>gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 3', mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 208 gcgacgtcgacaacgaagcggta 230
||||||||||| |||||||||||
Sbjct: 200 gcgacgtcgacgacgaagcggta 222
>gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. vulgare cDNA clone HP02P10
3-PRIME, mRNA sequence
Length = 667
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 208 gcgacgtcgacaacgaagcggta 230
||||||||||| |||||||||||
Sbjct: 204 gcgacgtcgacgacgaagcggta 226
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 166,978
Number of Sequences: 312970
Number of extensions: 166978
Number of successful extensions: 40690
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40586
Number of HSP's gapped (non-prelim): 90
length of query: 636
length of database: 175,134,539
effective HSP length: 19
effective length of query: 617
effective length of database: 169,188,109
effective search space: 104389063253
effective search space used: 104389063253
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)