BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots... 131 3e-029
gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedl... 131 3e-029
gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA li... 131 3e-029
gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedl... 125 2e-027
gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subs... 113 7e-024
gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, wat... 113 7e-024
gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA li... 107 5e-022
gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. v... 105 2e-021
emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplasti... 105 2e-021
gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. v... 100 1e-019
gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. v... 100 1e-019
gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. v... 90 1e-016
gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedl... 56 2e-006
gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, wat... 44 0.006
gb|BQ766953.1|BQ766953 EBro08_SQ007_G16_R root, 3 week, dro... 44 0.006
gb|AL502243.1|AL502243 AL502243 Hordeum vulgare Barke roots... 42 0.023
gb|BF260012.3|BF260012 HVSMEf0020N22f Hordeum vulgare seedl... 42 0.023
gb|BJ462585.1|BJ462585 BJ462585 K. Sato unpublished cDNA li... 42 0.023
gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Libr... 38 0.35
gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedl... 38 0.35
gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedl... 38 0.35
gb|BF263316.2|BF263316 HV_CEa0006G21f Hordeum vulgare seedl... 38 0.35
gb|AV927370.1|AV927370 AV927370 K. Sato unpublished cDNA li... 38 0.35
gb|AV927721.1|AV927721 AV927721 K. Sato unpublished cDNA li... 38 0.35
gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA li... 38 0.35
gb|AV929639.1|AV929639 AV929639 K. Sato unpublished cDNA li... 38 0.35
gb|AV931702.1|AV931702 AV931702 K. Sato unpublished cDNA li... 38 0.35
gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. v... 38 0.35
gb|BQ661106.1|BQ661106 HM01P04w HM Hordeum vulgare subsp. v... 38 0.35
gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. v... 38 0.35
gb|CB875288.1|CB875288 HX07N13w HX Hordeum vulgare subsp. v... 38 0.35
gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. v... 38 0.35
>gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14u 3', mRNA sequence
Length = 595
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Minus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 509 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 450
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 449 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 390
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 389 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 330
Query: 246 aa 247
||
Sbjct: 329 aa 328
>gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D03f, mRNA sequence
Length = 690
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 178 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 237
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 238 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 297
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 298 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 357
Query: 246 aa 247
||
Sbjct: 358 aa 359
>gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l01 3', mRNA sequence
Length = 502
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Minus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 478 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 419
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 418 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 359
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 358 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 299
Query: 246 aa 247
||
Sbjct: 298 aa 297
>gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 5', mRNA sequence
Length = 600
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 108 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 167
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 168 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 227
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 228 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 287
Query: 246 aa 247
||
Sbjct: 288 aa 289
>gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 3', mRNA sequence
Length = 581
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Minus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 475 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 416
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 415 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 356
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 355 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 296
Query: 246 aa 247
||
Sbjct: 295 aa 294
>gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 3', mRNA sequence
Length = 602
Score = 131 bits (66), Expect = 3e-029
Identities = 153/182 (84%)
Strand = Plus / Minus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 483 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 424
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 423 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 364
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 363 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 304
Query: 246 aa 247
||
Sbjct: 303 aa 302
>gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E20f, mRNA sequence
Length = 790
Score = 125 bits (63), Expect = 2e-027
Identities = 152/182 (83%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 303 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 362
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 363 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 422
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||| ||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 423 ctctcgagagtgtacccgtncatggcgatcgggaaagacgcgcatctctacgtgttcaac 482
Query: 246 aa 247
||
Sbjct: 483 aa 484
>gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078A03F1, mRNA sequence
Length = 502
Score = 113 bits (57), Expect = 7e-024
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 87 ttcgtcgacgccgacatctccagcggcaagatcacccttagaagcttgatcgatcggtcc 146
||||||||| ||||||| || ||| |||||| || | |||||||||||||| || |||
Sbjct: 9 ttcgtcgacaccgacatttcatccgggaagatctccttgagaagcttgatcgaccgttcc 68
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtcc 206
||||| |||||||||||||| ||||| ||||| |||||||| || | ||||||||||||
Sbjct: 69 gtggttgagagcttcggcgccggagggaagacctgcatcctctcgagagtgtacccgtcc 128
Query: 207 atcgccgtcgggaaggacgctcacctctacgttttcaacaa 247
|| || ||||||| ||||| || |||||||| ||||||||
Sbjct: 129 atggcgatcgggaaagacgcgcatctctacgtgttcaacaa 169
>gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O23 5', mRNA sequence
Length = 484
Score = 113 bits (57), Expect = 7e-024
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 87 ttcgtcgacgccgacatctccagcggcaagatcacccttagaagcttgatcgatcggtcc 146
||||||||| ||||||| || ||| |||||| || | |||||||||||||| || |||
Sbjct: 8 ttcgtcgacaccgacatttcatccgggaagatctccttgagaagcttgatcgaccgttcc 67
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtcc 206
||||| |||||||||||||| ||||| ||||| |||||||| || | ||||||||||||
Sbjct: 68 gtggttgagagcttcggcgccggagggaagacctgcatcctctcgagagtgtacccgtcc 127
Query: 207 atcgccgtcgggaaggacgctcacctctacgttttcaacaa 247
|| || ||||||| ||||| || |||||||| ||||||||
Sbjct: 128 atggcgatcgggaaagacgcgcatctctacgtgttcaacaa 168
>gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l02 3', mRNA sequence
Length = 425
Score = 107 bits (54), Expect = 5e-022
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 393 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 334
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 333 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 274
Query: 246 aa 247
||
Sbjct: 273 aa 272
>gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02B12
5-PRIME, mRNA sequence
Length = 528
Score = 105 bits (53), Expect = 2e-021
Identities = 188/233 (80%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||||||||| ||||| || ||| | ||||| ||| |||||||| | ||
Sbjct: 84 tacaagccgaccttcgcaggctttgttgacactgacatagccaagggcaagatatctctg 143
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||| |||||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 144 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 203
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 204 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 263
Query: 246 aacggcgaggtggacgtcacggtgtccggcctgaccgcctgggagatgaagaa 298
|||||| |||||||| ||| |||||| | || || || ||||||||||||||
Sbjct: 264 aacggcaaggtggacatcaaggtgtcggagctcacggcgtgggagatgaagaa 316
>emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplastic invertase 1 (cwinw1 gene)
Length = 2095
Score = 105 bits (53), Expect = 2e-021
Identities = 188/233 (80%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||||||||| ||||| || ||| | ||||| ||| |||||||| | ||
Sbjct: 1578 tacaagccgaccttcgcaggctttgttgacactgacatagccaagggcaagatatctctg 1637
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||| |||||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 1638 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 1697
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 1698 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 1757
Query: 246 aacggcgaggtggacgtcacggtgtccggcctgaccgcctgggagatgaagaa 298
|||||| |||||||| ||| |||||| | || || || ||||||||||||||
Sbjct: 1758 aacggcaaggtggacatcaaggtgtcggagctcacggcgtgggagatgaagaa 1810
>gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB25B07
5-PRIME, mRNA sequence
Length = 477
Score = 99.6 bits (50), Expect = 1e-019
Identities = 167/206 (81%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||||||||| ||||| || ||| | ||||| ||| |||||||| | ||
Sbjct: 250 tacaagccgaccttcgcaggctttgttgacactgacatagccaagggcaagatatctctg 309
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||| |||||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 310 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 369
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 370 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 429
Query: 246 aacggcgaggtggacgtcacggtgtc 271
|||||| |||||||| ||| ||||||
Sbjct: 430 aacggcaaggtggacatcaaggtgtc 455
>gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G07
5-PRIME, mRNA sequence
Length = 540
Score = 99.6 bits (50), Expect = 1e-019
Identities = 167/206 (81%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||||||||| ||||| || ||| | ||||| ||| |||||||| | ||
Sbjct: 328 tacaagccgaccttcgcaggctttgttgacactgacatagccaagggcaagatatctctg 387
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||| |||||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 388 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 447
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 448 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 507
Query: 246 aacggcgaggtggacgtcacggtgtc 271
|||||| |||||||| ||| ||||||
Sbjct: 508 aacggcaaggtggacatcaaggtgtc 533
>gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O15
5-PRIME, mRNA sequence
Length = 481
Score = 89.7 bits (45), Expect = 1e-016
Identities = 141/173 (81%)
Strand = Plus / Plus
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
|||||| |||||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 25 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 84
Query: 186 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 245
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 85 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 144
Query: 246 aacggcgaggtggacgtcacggtgtccggcctgaccgcctgggagatgaagaa 298
|||||| |||||||| ||| |||||| | || || || ||||||||||||||
Sbjct: 145 aacggcaaggtggacatcaaggtgtcggagctcacggcgtgggagatgaagaa 197
>gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006B22f, mRNA sequence
Length = 604
Score = 56.0 bits (28), Expect = 2e-006
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccctt 125
||||||||||| ||||| || ||||||||| ||||||| || ||| |||||| || |
Sbjct: 493 tacaagccgacgttcgccgggttcgtcgacaccgacatttcatccgggaagatctccttg 552
Query: 126 agaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggagg 172
|||| ||||||| || |||||||| ||||||||| |||| |||||
Sbjct: 553 agaaagctgatcgaccgttccgtggttgagagcttcngcgccggagg 599
>gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J10 5', mRNA sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacat 103
||||||||||| ||||| || ||||||||| |||||||
Sbjct: 671 tacaagccgacgttcgccgggttcgtcgacaccgacat 708
>gb|BQ766953.1|BQ766953 EBro08_SQ007_G16_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_G16 5', mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 247 acggcgaggtggacgtcacggtgtcc 272
||||||||||||||||| ||||||||
Sbjct: 146 acggcgaggtggacgtcgcggtgtcc 121
>gb|AL502243.1|AL502243 AL502243 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06P06u 3', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 154 agagcttcggcgcgggaggcaagac 178
||||||||||||| |||||||||||
Sbjct: 282 agagcttcggcgccggaggcaagac 258
>gb|BF260012.3|BF260012 HVSMEf0020N22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020N22f, mRNA sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.023
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 154 agagcttcggcgcgggaggcaagac 178
||||||||||||| |||||||||||
Sbjct: 494 agagcttcggcgccggaggcaagac 518
>gb|BJ462585.1|BJ462585 BJ462585 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 5', mRNA sequence
Length = 184
Score = 42.1 bits (21), Expect = 0.023
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgaca 102
||||||||||| ||||| || ||||||||| ||||||
Sbjct: 148 tacaagccgacgttcgccgggttcgtcgacaccgaca 184
>gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F06, mRNA sequence
Length = 1123
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 199 gtggtggagagcttcggcggcggcggcaggacgtgcatc 237
>gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J22f, mRNA sequence
Length = 846
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 546 gtggtggagagcttcggcggcggcggcaggacgtgcatc 584
>gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C11f, mRNA sequence
Length = 750
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 500 gtggtggagagcttcggcggcggcggcaggacgtgcatc 538
>gb|BF263316.2|BF263316 HV_CEa0006G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006G21f, mRNA sequence
Length = 593
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 34 gtggtggagagcttcggcggcggcggcaggacgtgcatc 72
>gb|AV927370.1|AV927370 AV927370 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m05 3', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 572 gtggtggagagcttcggcggcggcggcaggacgtgcatc 534
>gb|AV927721.1|AV927721 AV927721 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3f20 3', mRNA sequence
Length = 647
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 570 gtggtggagagcttcggcggcggcggcaggacgtgcatc 532
>gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20e08 3', mRNA sequence
Length = 716
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 563 gtggtggagagcttcggcggcggcggcaggacgtgcatc 525
>gb|AV929639.1|AV929639 AV929639 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14p15 3', mRNA sequence
Length = 675
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 596 gtggtggagagcttcggcggcggcggcaggacgtgcatc 558
>gb|AV931702.1|AV931702 AV931702 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23n16 3', mRNA sequence
Length = 572
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 530 gtggtggagagcttcggcggcggcggcaggacgtgcatc 492
>gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. vulgare cDNA clone HM01P04
5-PRIME, mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 432 gtggtggagagcttcggcggcggcggcaggacgtgcatc 470
>gb|BQ661106.1|BQ661106 HM01P04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01P04
3-PRIME, mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 617 gtggtggagagcttcggcggcggcggcaggacgtgcatc 579
>gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
5-PRIME, mRNA sequence
Length = 475
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 138 gtggtggagagcttcggcggcggcggcaggacgtgcatc 176
>gb|CB875288.1|CB875288 HX07N13w HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
3-PRIME, mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 476 gtggtggagagcttcggcggcggcggcaggacgtgcatc 438
>gb|CB881780.1|CB881780 HM10N17w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N17
3-PRIME, mRNA sequence
Length = 612
Score = 38.2 bits (19), Expect = 0.35
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatc 185
||||| ||||||||||||| || |||| ||||||||||
Sbjct: 480 gtggtggagagcttcggcggcggcggcaggacgtgcatc 442
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,368
Number of Sequences: 312970
Number of extensions: 83368
Number of successful extensions: 28415
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28350
Number of HSP's gapped (non-prelim): 59
length of query: 661
length of database: 175,134,539
effective HSP length: 19
effective length of query: 642
effective length of database: 169,188,109
effective search space: 108618765978
effective search space used: 108618765978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)