BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI948344.1|BI948344 HVSMEl0009B19f Hordeum vulgare spike... 515 e-144
gb|BU989127.1|BU989127 HF19O04r HF Hordeum vulgare subsp. v... 509 e-142
gb|BU999237.1|BU999237 HI13N22r HI Hordeum vulgare subsp. v... 480 e-133
gb|CA009061.1|CA009061 HU13B02r HU Hordeum vulgare subsp. v... 460 e-127
gb|CB875733.1|CB875733 HX09D04w HX Hordeum vulgare subsp. v... 317 1e-084
gb|AV931729.1|AV931729 AV931729 K. Sato unpublished cDNA li... 270 2e-070
gb|AV930473.1|AV930473 AV930473 K. Sato unpublished cDNA li... 258 8e-067
gb|BM374367.2|BM374367 EBpi03_SQ003_G21_R pistil, 4 DPA, no... 248 8e-064
gb|BU966740.1|BU966740 HB02D11r BC Hordeum vulgare subsp. v... 242 5e-062
gb|CA006142.1|CA006142 HU05C02u HU Hordeum vulgare subsp. v... 226 3e-057
gb|CA000368.1|CA000368 HS08L05u HS Hordeum vulgare subsp. v... 222 5e-056
gb|CA015731.1|CA015731 HV12F09u HV Hordeum vulgare subsp. v... 222 5e-056
gb|AV925320.1|AV925320 AV925320 K. Sato unpublished cDNA li... 194 1e-047
gb|CA006183.1|CA006183 HU13B02u HU Hordeum vulgare subsp. v... 188 6e-046
gb|CA013510.1|CA013510 HT08K24r HT Hordeum vulgare subsp. v... 188 6e-046
gb|AV930819.1|AV930819 AV930819 K. Sato unpublished cDNA li... 172 4e-041
gb|AV916324.1|AV916324 AV916324 K. Sato unpublished cDNA li... 147 2e-033
gb|CK122599.1|CK122599 BES1824104j11 BES1824 Hordeum vulgar... 147 2e-033
gb|CB883236.1|CB883236 HQ01J21w HQ Hordeum vulgare subsp. v... 133 3e-029
gb|CA031164.1|CA031164 HX09D04r HX Hordeum vulgare subsp. v... 129 5e-028
gb|AV926836.1|AV926836 AV926836 K. Sato unpublished cDNA li... 119 5e-025
gb|AJ436318.1|AJ436318 AJ436318 S00002 Hordeum vulgare subs... 117 2e-024
gb|AV925676.1|AV925676 AV925676 K. Sato unpublished cDNA li... 98 2e-018
gb|CA016722.1|CA016722 HV06I03u HV Hordeum vulgare subsp. v... 58 2e-006
gb|BF623390.2|BF623390 HVSMEa0016I17f Hordeum vulgare seedl... 56 6e-006
gb|BI955091.1|BI955091 HVSMEm0021F01f Hordeum vulgare green... 50 4e-004
gb|CA000791.1|CA000791 HS06O12u HS Hordeum vulgare subsp. v... 48 0.001
gb|BU990590.1|BU990590 HF25H22r HF Hordeum vulgare subsp. v... 44 0.023
gb|AL501762.1|AL501762 AL501762 Hordeum vulgare Barke roots... 42 0.092
gb|BF254175.2|BF254175 HVSMEf0003D17f Hordeum vulgare seedl... 42 0.092
gb|BG344861.2|BG344861 HVSMEg0016I08f Hordeum vulgare pre-a... 42 0.092
gb|AV930770.1|AV930770 AV930770 K. Sato unpublished cDNA li... 42 0.092
gb|BU974897.1|BU974897 HB29H02r BC Hordeum vulgare subsp. v... 42 0.092
gb|BU975651.1|BU975651 HB31N14r BC Hordeum vulgare subsp. v... 42 0.092
gb|BU997444.1|BU997444 HI08A05r HI Hordeum vulgare subsp. v... 42 0.092
gb|CA023265.1|CA023265 HZ45L11r HZ Hordeum vulgare subsp. v... 42 0.092
gb|CB881355.1|CB881355 HM09I21w HM Hordeum vulgare subsp. v... 42 0.092
gb|CV061579.1|CV061579 BNEL6E5 Barley EST endosperm library... 42 0.092
gb|CV063330.1|CV063330 BNEL89b3 Barley EST endosperm librar... 42 0.092
gb|BF625748.1|BF625748 HVSMEa0013H13f Hordeum vulgare seedl... 40 0.37
>gb|BI948344.1|BI948344 HVSMEl0009B19f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0009B19f, mRNA sequence
Length = 828
Score = 515 bits (260), Expect = e-144
Identities = 631/754 (83%), Gaps = 3/754 (0%)
Strand = Plus / Minus
Query: 903 ggatggagaacatatttcatgaaggtactccagtgcacgggcagagccgagtgcgatctt 962
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 762 ggatggagaacatatttcatgaagatactccagtgcacgggcagatcctagtgcgatcta 703
Query: 963 gatacgagagttccagctaagtggcttgctgtactcatctgaaaggtggagtagatcatg 1022
|| |||| |||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 702 aatgcgagtgttccagctaagtggcttgctgtattcatctgaaagatgaagtagatcatg 643
Query: 1023 aagcgatccattcctgtggaaatcatacacaagcaagtgctggccatgttccatgcaata 1082
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 642 aagtgatccattcctgtggaaatcatacacaagcaagtgttgtccatgttccatgcagta 583
Query: 1083 gcctacaagctcattcagattcggatggtgcaattttgaaatgttcgagaccagttcagc 1142
||| ||||||||||| ||||||||||||||||| | |||||||| |||||||||||| |
Sbjct: 582 gcccacaagctcattgagattcggatggtgcaaaatcgaaatgtttgagaccagttcaac 523
Query: 1143 aaagtcatcagatgattgaaatggcatcacagtactatctaatttcttgatcgccagaac 1202
|||||||||||||||||| ||||| || || |||| ||| | |||||| | |||| |||
Sbjct: 522 aaagtcatcagatgattggaatggtattacggtacaatccagtttcttcacggccaaaac 463
Query: 1203 ctttccatcattgaattgtgccctgtaaacacgtccaaaagtaccctctccaacaaggtt 1262
||||||||| || || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 462 ctttccatcgttaaactgtgacctgtagacacgtccaaaagtaccctctccaacaaggtt 403
Query: 1263 gtcgaagctaaagctatctgttgccatctgtagatctgcaactgaataaacagttgcctt 1322
||| | ||| |||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 402 gtccatgctgaagctatctgttgctatttgtagatctgcaactgaataaacaattgcctt 343
Query: 1323 cataggtgttatattacttctatttgcagcagtcttgtttgaaaaatcatcatcatcatc 1382
|||||| || |||| ||| | |||| | | ||| | | || |||||||| |||||
Sbjct: 342 tataggttttgtattgcttttccttgcgacgggtttgctcaagaagtcatcatcgtcatc 283
Query: 1383 aaatgatttgttctgttctatcttcgggggtggtttcagattaatcgaagcaggtgaagc 1442
||||| ||||| |||| ||||| | ||||| |||||| | |||||||| |||||
Sbjct: 282 gaatgacttgttgcgttcaatcttggcaggtggcttcagaccagctgaagcaggggaagc 223
Query: 1443 caaagactctatgtctactgtggtggactcatagataggcttcatgtcgttaacttcatt 1502
|||||| || | |||| || ||| ||||| | || ||||||| | || |||||||| |
Sbjct: 222 caaagagtccacatctattgcggttgactcttcgaaaggcttcgtatctttaacttcgtc 163
Query: 1503 tgaagggaaggaagtgaacggctgatgctgttcaaaatgttcttccataacagctttgcg 1562
||||||||| |||||||| ||||| ||||||||||| || || ||| | || ||||||
Sbjct: 162 tgaagggaatgaagtgaatggctggtgctgttcaaagtgctcctccctcttagatttgcg 103
Query: 1563 ttttcttcttttgatcacaaaaaatgcaacaactgatccaacaaccagcaacgatataat 1622
|| ||| || |||||||||||||||| || || ||| || |||||||| ||||| ||
Sbjct: 102 cttccttttt---atcacaaaaaatgcaataattgctccgacgaccagcaaagatatgat 46
Query: 1623 gattcctgctacacctccaccacctatcccagat 1656
|| || |||||| | || |||| ||| ||||||
Sbjct: 45 aatgcccgctacagcaccgccacttattccagat 12
>gb|BU989127.1|BU989127 HF19O04r HF Hordeum vulgare subsp. vulgare cDNA clone HF19O04
5-PRIME, mRNA sequence
Length = 623
Score = 509 bits (257), Expect = e-142
Identities = 521/609 (85%)
Strand = Plus / Minus
Query: 903 ggatggagaacatatttcatgaaggtactccagtgcacgggcagagccgagtgcgatctt 962
|||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 620 ggatggagaacatacttcatgaagatactccagtgcacgggcagatcctagtgcgatctt 561
Query: 963 gatacgagagttccagctaagtggcttgctgtactcatctgaaaggtggagtagatcatg 1022
|| |||| |||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 560 aatgcgagtgttccagctaagtggcttgctgtattcatctgaaagatgaagtagatcatg 501
Query: 1023 aagcgatccattcctgtggaaatcatacacaagcaagtgctggccatgttccatgcaata 1082
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 500 aagtgatccattcctgtggaaatcatacacaagcaagtgttgtccatgttccatgcagta 441
Query: 1083 gcctacaagctcattcagattcggatggtgcaattttgaaatgttcgagaccagttcagc 1142
|| ||||||||||| ||||||||||||||||| | |||||||| |||||||||||| |
Sbjct: 440 acccacaagctcattgagattcggatggtgcaaaatcgaaatgtttgagaccagttcaac 381
Query: 1143 aaagtcatcagatgattgaaatggcatcacagtactatctaatttcttgatcgccagaac 1202
|||||||||||||||||| ||||| || || |||| ||| | |||||| | |||| |||
Sbjct: 380 aaagtcatcagatgattggaatggtattacggtacaatccagtttcttcacggccaaaac 321
Query: 1203 ctttccatcattgaattgtgccctgtaaacacgtccaaaagtaccctctccaacaaggtt 1262
||||||||| || || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ctttccatcgttaaactgtgacctgtagacacgtccaaaagtaccctctccaacaaggtt 261
Query: 1263 gtcgaagctaaagctatctgttgccatctgtagatctgcaactgaataaacagttgcctt 1322
||| | ||| |||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 260 gtccatgctgaagctatctgttgctatttgtagatctgcaactgaataaacaattgcctt 201
Query: 1323 cataggtgttatattacttctatttgcagcagtcttgtttgaaaaatcatcatcatcatc 1382
|||||| || |||| ||| | |||| | | ||| | || || |||||||| |||||
Sbjct: 200 tataggttttgtattgcttttccttgcgacgggtttgctcgagaagtcatcatcgtcatc 141
Query: 1383 aaatgatttgttctgttctatcttcgggggtggtttcagattaatcgaagcaggtgaagc 1442
||||| ||||| |||| ||||| | ||||| |||||| || |||||||| |||||
Sbjct: 140 gaatgacttgttgcgttcaatcttggcaggtggcttcagaccaactgaagcaggggaagc 81
Query: 1443 caaagactctatgtctactgtggtggactcatagataggcttcatgtcgttaacttcatt 1502
|||||| || || |||| || ||| ||||| | || ||||||| | || |||||||| ||
Sbjct: 80 caaagagtccatatctattgcggttgactcttcgaaaggcttcgtatctttaacttcgtt 21
Query: 1503 tgaagggaa 1511
|||||||||
Sbjct: 20 tgaagggaa 12
>gb|BU999237.1|BU999237 HI13N22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13N22
5-PRIME, mRNA sequence
Length = 634
Score = 480 bits (242), Expect = e-133
Identities = 497/582 (85%)
Strand = Plus / Minus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 611 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 552
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 551 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 492
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 491 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 432
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 431 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 372
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 371 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 312
Query: 666 gtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatc 725
||| |||||| | ||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 311 gtcgaatggtttgcgtccagtcaaaagctctagcatgacaaccccaaagctgtagacatc 252
Query: 726 actcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactttg 785
||||| | |||||||| || ||||||||||| |||||||||||| | |||||||| ||
Sbjct: 251 gctcttcatagtgtactggccagtcatgtccacctctggggcagtgcacccggcactctg 192
Query: 786 ttctgctgcctggaattcagcaccaggaataaagcttgcaagtccagcatctgaaaggtg 845
|||||||| ||| || |||||| ||||||||||||| || ||||||||||||||||||||
Sbjct: 191 ttctgctgtctgaaactcagcatcaggaataaagctagcgagtccagcatctgaaaggtg 132
Query: 846 tggattgaattctgagtccagcaaaatatttgacgacttgaaattcttatggatgatgga 905
||||||| |||||||||| |||| ||| || || |||||||||||||| || | || |||
Sbjct: 131 tggattgtattctgagtcgagcagaatgttggatgacttgaaattcttgtgaacgacgga 72
Query: 906 tggagaacatatttcatgaaggtactccagtgcacgggcaga 947
||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 71 tggagaacatacttcatgaagatactccagtgcacgggcaga 30
>gb|CA009061.1|CA009061 HU13B02r HU Hordeum vulgare subsp. vulgare cDNA clone HU13B02
5-PRIME, mRNA sequence
Length = 625
Score = 460 bits (232), Expect = e-127
Identities = 487/572 (85%)
Strand = Plus / Minus
Query: 967 cgagagttccagctaagtggcttgctgtactcatctgaaaggtggagtagatcatgaagc 1026
|||| |||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 622 cgagtgttccagctaagtggcttgctgtattcatctgaaagatgaagtagatcatgaagt 563
Query: 1027 gatccattcctgtggaaatcatacacaagcaagtgctggccatgttccatgcaatagcct 1086
||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 562 gatccattcctgtggaaatcatacacaagcaagtgttgtccatgttccatgcagtaaccc 503
Query: 1087 acaagctcattcagattcggatggtgcaattttgaaatgttcgagaccagttcagcaaag 1146
||||||||||| ||||||||||||||||| | |||||||| |||||||||||| |||||
Sbjct: 502 acaagctcattgagattcggatggtgcaaaatcgaaatgtttgagaccagttcaacaaag 443
Query: 1147 tcatcagatgattgaaatggcatcacagtactatctaatttcttgatcgccagaaccttt 1206
|||||||||||||| ||||| || || |||| ||| | |||||| | |||| |||||||
Sbjct: 442 tcatcagatgattggaatggtattacggtacaatccagtttcttcacggccaaaaccttt 383
Query: 1207 ccatcattgaattgtgccctgtaaacacgtccaaaagtaccctctccaacaaggttgtcg 1266
||||| || || |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 ccatcgttaaactgtgacctgtagacacgtccaaaagtaccctctccaacaaggttgtcc 323
Query: 1267 aagctaaagctatctgttgccatctgtagatctgcaactgaataaacagttgccttcata 1326
| ||| |||||||||||||| || |||||||||||||||||||||||| ||||||| |||
Sbjct: 322 atgctgaagctatctgttgctatttgtagatctgcaactgaataaacaattgcctttata 263
Query: 1327 ggtgttatattacttctatttgcagcagtcttgtttgaaaaatcatcatcatcatcaaat 1386
||| || |||| ||| | |||| | | ||| | || || |||||||| ||||| |||
Sbjct: 262 ggttttgtattgcttttccttgcgacgggtttgctcgagaagtcatcatcgtcatcgaat 203
Query: 1387 gatttgttctgttctatcttcgggggtggtttcagattaatcgaagcaggtgaagccaaa 1446
|| ||||| |||| ||||| | ||||| |||||| || |||||||| |||||||||
Sbjct: 202 gacttgttgcgttcaatcttggcaggtggcttcagaccaactgaagcaggggaagccaaa 143
Query: 1447 gactctatgtctactgtggtggactcatagataggcttcatgtcgttaacttcatttgaa 1506
|| || || |||| || ||| ||||| | || ||||||| | || |||||||| ||||||
Sbjct: 142 gagtccatatctattgcggttgactcttcgaaaggcttcgtatctttaacttcgtttgaa 83
Query: 1507 gggaaggaagtgaacggctgatgctgttcaaa 1538
||||| |||||||| ||||| |||||||||||
Sbjct: 82 gggaatgaagtgaatggctggtgctgttcaaa 51
>gb|CB875733.1|CB875733 HX09D04w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D04
3-PRIME, mRNA sequence
Length = 637
Score = 317 bits (160), Expect = 1e-084
Identities = 361/428 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 206 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 265
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 266 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 325
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 326 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 385
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 386 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 445
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 446 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 505
Query: 666 gtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatc 725
||| |||||| | ||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 506 gtcgaatggtttgcgtccagtcaaaagctctagcatgacaaccccaaagctgtagacatc 565
Query: 726 actcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactttg 785
||||| | |||||||| || ||||||||||| |||||||||||| | |||||||| ||
Sbjct: 566 gctcttcatagtgtactggccagtcatgtccacctctggggcagtgcacccggcactctg 625
Query: 786 ttctgctg 793
||||||||
Sbjct: 626 ttctgctg 633
>gb|AV931729.1|AV931729 AV931729 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23p08 3', mRNA sequence
Length = 685
Score = 270 bits (136), Expect = 2e-070
Identities = 328/392 (83%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| |||| | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 294 tcatatgaaatcctggtcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 353
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||| ||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 354 cttcgtcatgttagccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 413
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || ||||| || ||
Sbjct: 414 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgtgaaag 473
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 474 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 533
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 534 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 593
Query: 666 gtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatc 725
||| |||||| | ||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 594 gtcgaatggtttgcgtccagtcaaaagctctagcatgacaaccccaaagctgtagacatc 653
Query: 726 actcttgaaggtgtactgaccggtcatgtcca 757
||||| | |||||||| || ||||||||||
Sbjct: 654 gctcttcatagtgtactggccagtcatgtcca 685
>gb|AV930473.1|AV930473 AV930473 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22k21 3', mRNA sequence
Length = 650
Score = 258 bits (130), Expect = 8e-067
Identities = 307/366 (83%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| |||| | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 271 tcatatgaaatcctggtcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 330
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||| ||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 331 cttcgtcatgttagccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 390
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || ||||| || ||
Sbjct: 391 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgtgaaag 450
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 451 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 510
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 511 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 570
Query: 666 gtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatc 725
||| |||||| | ||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 571 gtcgaatggtttgcgtccagtcaaaagctctagcatgacaaccccaaagctgtagacatc 630
Query: 726 actctt 731
|||||
Sbjct: 631 gctctt 636
>gb|BM374367.2|BM374367 EBpi03_SQ003_G21_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_G21 5', mRNA sequence
Length = 526
Score = 248 bits (125), Expect = 8e-064
Identities = 293/349 (83%)
Strand = Plus / Minus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| |||| | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 349 tcatatgaaatcctggtcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 290
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 289 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 230
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || ||||| || ||
Sbjct: 229 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgtgaaag 170
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 169 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 110
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 109 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 50
Query: 666 gtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaag 714
||| |||||| | ||||| ||||| || || ||||||||||| ||||||
Sbjct: 49 gtcgaatggtttgcgtccagtcaaaagctctagcatgacaaccccaaag 1
>gb|BU966740.1|BU966740 HB02D11r BC Hordeum vulgare subsp. vulgare cDNA clone HB02D11
5-PRIME, mRNA sequence
Length = 541
Score = 242 bits (122), Expect = 5e-062
Identities = 397/488 (81%), Gaps = 3/488 (0%)
Strand = Plus / Minus
Query: 1195 gccagaacctttccatcattgaattgtgccctgtaaacacgtccaaaagtaccctctcca 1254
|||| |||||||||||| || || |||| |||||| ||||||||||||||||||||||||
Sbjct: 539 gccaaaacctttccatcgttaaactgtgacctgtagacacgtccaaaagtaccctctcca 480
Query: 1255 acaaggttgtcgaagctaaagctatctgttgccatctgtagatctgcaactgaataaaca 1314
||||||||||| | ||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 479 acaaggttgtccatgctgaagctatctgttgctatttgtagatctgcaactgaataaaca 420
Query: 1315 gttgccttcataggtgttatattacttctatttgcagcagtcttgtttgaaaaatcatca 1374
||||||| |||||| || |||| ||| | |||| | | ||| | || || ||||||
Sbjct: 419 attgcctttataggttttgtattgcttttccttgcgacgggtttgctcgagaagtcatca 360
Query: 1375 tcatcatcaaatgatttgttctgttctatcttcgggggtggtttcagattaatcgaagca 1434
|| ||||| ||||| ||||| |||| ||||| | ||||| |||||| || ||||||
Sbjct: 359 tcgtcatcgaatgacttgttgcgttcaatcttggcaggtggcttcagaccaactgaagca 300
Query: 1435 ggtgaagccaaagactctatgtctactgtggtggactcatagataggcttcatgtcgtta 1494
|| ||||||||||| || || |||| || ||| ||||| | || ||||||| | || |||
Sbjct: 299 ggggaagccaaagagtccatatctattgcggttgactcttcgaaaggcttcgtatcttta 240
Query: 1495 acttcatttgaagggaaggaagtgaacggctgatgctgttcaaaatgttcttccataaca 1554
||||| ||||||||||| |||||||| ||||| ||||||||||| || || ||| | |
Sbjct: 239 acttcgtttgaagggaatgaagtgaatggctggtgctgttcaaagtgctcctccctctta 180
Query: 1555 gctttgcgttttcttcttttgatcacaaaaaatgcaacaactgatccaacaaccagcaac 1614
| |||||| | | ||||| |||||||||||||||| || || ||| || ||||||||
Sbjct: 179 gatttgcgct---tcctttttatcacaaaaaatgcaataattgctccgacgaccagcaaa 123
Query: 1615 gatataatgattcctgctacacctccaccacctatcccagatcttccaccagaacttgat 1674
||||| || || ||||||||| | || |||| ||| |||||| | ||| ||||| |||||
Sbjct: 122 gatatgataatgcctgctacagcaccgccacttattccagatttcccatcagaagttgat 63
Query: 1675 gaaccatc 1682
||||||||
Sbjct: 62 gaaccatc 55
>gb|CA006142.1|CA006142 HU05C02u HU Hordeum vulgare subsp. vulgare cDNA clone HU05C02
3-PRIME, mRNA sequence
Length = 501
Score = 226 bits (114), Expect = 3e-057
Identities = 261/310 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 186 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 245
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 246 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 305
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 306 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 365
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 366 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 425
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagct 665
||| || |||||||| | |||||||||||||||||||| |||||||| || | |||||
Sbjct: 426 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacctaggcttggagct 485
Query: 666 gtcaaatggt 675
||| ||||||
Sbjct: 486 gtcgaatggt 495
>gb|CA000368.1|CA000368 HS08L05u HS Hordeum vulgare subsp. vulgare cDNA clone HS08L05
3-PRIME, mRNA sequence
Length = 517
Score = 222 bits (112), Expect = 5e-056
Identities = 244/288 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 214 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 273
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 274 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 333
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 334 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 393
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 394 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 453
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
||| || |||||||| | |||||||||||||||||||| ||||||||
Sbjct: 454 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacct 501
>gb|CA015731.1|CA015731 HV12F09u HV Hordeum vulgare subsp. vulgare cDNA clone HV12F09
3-PRIME, mRNA sequence
Length = 486
Score = 222 bits (112), Expect = 5e-056
Identities = 244/288 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 184 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 243
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 244 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 303
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 304 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 363
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 364 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 423
Query: 606 gtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
||| || |||||||| | |||||||||||||||||||| ||||||||
Sbjct: 424 gtcgtggagctggggagacgcccaccgcacaagtgactgctctgacct 471
>gb|AV925320.1|AV925320 AV925320 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22k21 5', mRNA sequence
Length = 681
Score = 194 bits (98), Expect = 1e-047
Identities = 311/382 (81%)
Strand = Plus / Minus
Query: 1763 tccaagaatttccgtcggtctgtagattgtttatcttcttaagctgactgggaatccaac 1822
|||||||||| || || ||||||||| | |||||||||||||| ||||| ||||||||||
Sbjct: 678 tccaagaattaccatcagtctgtagactatttatcttcttaagttgactaggaatccaac 619
Query: 1823 cagtgaaatggttgtttccaacattcagggtttcaaggggaaggttggctaagacattga 1882
||||||| | || ||| |||||||||| ||||||||| ||||||| ||||||||
Sbjct: 618 cagtgaagcgattatttgcaacattcagatcagaaaggggaagattggctaggacattga 559
Query: 1883 tataaccagtaaattggttgttctgcaaatacattcttttcaggcttgacaatccagtga 1942
|| |||| || || || |||||||||||||| | |||| | ||||||| | | | |
Sbjct: 558 tagaaccggtcaactgattgttctgcaaatatagagttttaacacttgacagtgaactta 499
Query: 1943 aactttgtggtagatcaccagtaagagaattaaaggagagatccagctctgacaaactat 2002
||| || |||||| ||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 498 aaccttctggtaggtcaccagtaagagaattaaaggagagatccactgttgtcaagctgc 439
Query: 2003 aaaggttggaaaatacatcagtgatgtttccttgtagttggttatgattaaggtttaaat 2062
||||||||||||||| || || || |||||||||| |||||||| |||| |||||||
Sbjct: 438 caaggttggaaaatacgtcggtcatttttccttgtaactggttatggttaatatttaaat 379
Query: 2063 acttaagattaggcatcgtcgaaattgagtagggtaaatttccaccaaattgatttcctg 2122
||||||||||| ||||| |||| |||||||| || | ||||||||| || |||||||
Sbjct: 378 acttaagattattcatcgagaaaatcgagtagggcaactctccaccaaactggtttcctg 319
Query: 2123 caagattgagtttctcaagctt 2144
|||||||||| ||||||||||
Sbjct: 318 caagattgagcctctcaagctt 297
Score = 97.6 bits (49), Expect = 2e-018
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 266 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 207
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 206 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 147
Query: 2295 tcctgagcaagtaatgcccttccatgactggccacaaggatcacccccattcgcctgcca 2354
|||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||| | |||||
Sbjct: 146 tcctgagcaagtgatgccctgccatgattcgccgcaagggtcaccaccattcacttgcca 87
Query: 2355 agctctgagctgcccaggagaattcagactggtgaagagcgtattgagg 2403
|| |||||||||| |||||||||| || ||||||||||| ||||||
Sbjct: 86 gcctttgagctgccccggagaattcaagctagtgaagagcgtgttgagg 38
>gb|CA006183.1|CA006183 HU13B02u HU Hordeum vulgare subsp. vulgare cDNA clone HU13B02
3-PRIME, mRNA sequence
Length = 443
Score = 188 bits (95), Expect = 6e-046
Identities = 215/255 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 189 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 248
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 249 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 308
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 309 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 368
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 369 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 428
Query: 606 gtcatgcagctgggg 620
||| || ||||||||
Sbjct: 429 gtcgtggagctgggg 443
>gb|CA013510.1|CA013510 HT08K24r HT Hordeum vulgare subsp. vulgare cDNA clone HT08K24
5-PRIME, mRNA sequence
Length = 531
Score = 188 bits (95), Expect = 6e-046
Identities = 215/255 (84%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 275 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 334
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 335 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 394
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || |||||||| ||
Sbjct: 395 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgggaaag 454
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 455 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 514
Query: 606 gtcatgcagctgggg 620
||| || ||||||||
Sbjct: 515 gtcgtggagctgggg 529
>gb|AV930819.1|AV930819 AV930819 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25f19 3', mRNA sequence
Length = 522
Score = 172 bits (87), Expect = 4e-041
Identities = 204/243 (83%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| |||| | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 272 tcatatgaaatcctggtcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 331
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||| ||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 332 cttcgtcatgttagccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 391
Query: 486 tggcctgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatag 545
|||||||||||| || |||| ||||||||||| |||||| || || || ||||| || ||
Sbjct: 392 tggcctgaattccggctcagcctggacacacaaggcaagcacgtcggcgaatcgtgaaag 451
Query: 546 agatttagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgat 605
||| || || ||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 452 agacttggcagggtacagacccttgagcgcaggatcgaccatcctgtccaacgcatcgat 511
Query: 606 gtc 608
|||
Sbjct: 512 gtc 514
>gb|AV916324.1|AV916324 AV916324 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12k08 5', mRNA sequence
Length = 215
Score = 147 bits (74), Expect = 2e-033
Identities = 174/209 (83%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||||||| ||||||||||||| || |||||||| || |||||||| | |||||||||
Sbjct: 213 gcaggatcgnccatcctgtccaacgcatcgatgtcgtggagctggggagacgcccaccgc 154
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
||||||||||| |||| ||| || | |||||||| |||||| | ||||| ||||| ||
Sbjct: 153 acaagtgactgctctgncctaggcttggagctgtcgaatggtttgcgtccagtcaaaagc 94
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgaccggtcatg 753
|| |||||| |||| ||||| ||||| ||||| ||||| | |||||||| || ||||||
Sbjct: 93 tctagcatgncaaccccaaanctgtagacatcgctcttcatagtgtactgnccagtcatg 34
Query: 754 tccacttctggggcagtgtatccggcact 782
||||| | |||||||||| | ||||||||
Sbjct: 33 tccacctatggggcagtgcacccggcact 5
>gb|CK122599.1|CK122599 BES1824104j11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J114 5-PRIME, mRNA sequence
Length = 767
Score = 147 bits (74), Expect = 2e-033
Identities = 233/286 (81%)
Strand = Plus / Minus
Query: 1859 ggggaaggttggctaagacattgatataaccagtaaattggttgttctgcaaatacattc 1918
||||||| ||||||| |||||||||| |||| || || || |||||||||||||| |
Sbjct: 643 ggggaagattggctaggacattgatagaaccggtcaactgattgttctgcaaatatagag 584
Query: 1919 ttttcaggcttgacaatccagtgaaactttgtggtagatcaccagtaagagaattaaagg 1978
|||| | ||||||| | | | |||| || |||||| ||||||||||||||||||||||
Sbjct: 583 ttttaacacttgacagtgaacttaaaccttctggtaggtcaccagtaagagaattaaagg 524
Query: 1979 agagatccagctctgacaaactataaaggttggaaaatacatcagtgatgtttccttgta 2038
||||||||| || ||| || ||||||||||||||| || || || ||||||||||
Sbjct: 523 agagatccactgttgtcaagctgccaaggttggaaaatacgtcggtcatttttccttgta 464
Query: 2039 gttggttatgattaaggtttaaatacttaagattaggcatcgtcgaaattgagtagggta 2098
|||||||| |||| |||||||||||||||||| ||||| |||| |||||||| |
Sbjct: 463 actggttatggttaatatttaaatacttaagattattcatcgggaaaatcgagtagggca 404
Query: 2099 aatttccaccaaattgatttcctgcaagattgagtttctcaagctt 2144
| | ||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 403 actctccaccaaactggtttcctgcaagattgagcctctcaagctt 358
Score = 97.6 bits (49), Expect = 2e-018
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 327 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 268
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 267 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 208
Query: 2295 tcctgagcaagtaatgcccttccatgactggccacaaggatcacccccattcgcctgcca 2354
|||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||| | |||||
Sbjct: 207 tcctgagcaagtgatgccctgccatgattcgccgcaagggtcaccgccattcacttgcca 148
Query: 2355 agctctgagctgcccaggagaattcagactggtgaagagcgtattgagg 2403
|| |||||||||| |||||||||| || ||||||||||| ||||||
Sbjct: 147 gcctttgagctgccccggagaattcaagctagtgaagagcgtgttgagg 99
>gb|CB883236.1|CB883236 HQ01J21w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01J21
3-PRIME, mRNA sequence
Length = 532
Score = 133 bits (67), Expect = 3e-029
Identities = 163/195 (83%)
Strand = Plus / Minus
Query: 1950 tggtagatcaccagtaagagaattaaaggagagatccagctctgacaaactataaaggtt 2009
|||||| ||||||||||||||||||||||||||||||| || ||| || ||||||
Sbjct: 400 tggtaggtcaccagtaagagaattaaaggagagatccactgttgtcaagctgccaaggtt 341
Query: 2010 ggaaaatacatcagtgatgtttccttgtagttggttatgattaaggtttaaatacttaag 2069
||||||||| || || || |||||||||| |||||||| |||| ||||||||||||||
Sbjct: 340 ggaaaatacgtcggtcatttttccttgtaactggttatggttaatatttaaatacttaag 281
Query: 2070 attaggcatcgtcgaaattgagtagggtaaatttccaccaaattgatttcctgcaagatt 2129
|||| ||||| |||| |||||||| || | ||||||||| || ||||||||||||||
Sbjct: 280 attattcatcgagaaaatcgagtagggcaactctccaccaaactggtttcctgcaagatt 221
Query: 2130 gagtttctcaagctt 2144
||| ||||||||||
Sbjct: 220 gagcctctcaagctt 206
Score = 54.0 bits (27), Expect = 2e-005
Identities = 117/147 (79%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 175 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 116
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 115 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 56
Query: 2295 tcctgagcaagtaatgcccttccatga 2321
|||||||||||| ||||||| ||||||
Sbjct: 55 tcctgagcaagtgatgccctgccatga 29
>gb|CA031164.1|CA031164 HX09D04r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D04
5-PRIME, mRNA sequence
Length = 594
Score = 129 bits (65), Expect = 5e-028
Identities = 161/193 (83%)
Strand = Plus / Minus
Query: 1952 gtagatcaccagtaagagaattaaaggagagatccagctctgacaaactataaaggttgg 2011
|||| ||||||||||||||||||||||||||||||| || ||| || ||||||||
Sbjct: 594 gtaggtcaccagtaagagaattaaaggagagatccactgttgtcaagctgccaaggttgg 535
Query: 2012 aaaatacatcagtgatgtttccttgtagttggttatgattaaggtttaaatacttaagat 2071
||||||| || || || |||||||||| |||||||| |||| ||||||||||||||||
Sbjct: 534 aaaatacgtcggtcatttttccttgtaactggttatggttaatatttaaatacttaagat 475
Query: 2072 taggcatcgtcgaaattgagtagggtaaatttccaccaaattgatttcctgcaagattga 2131
|| ||||| |||| |||||||| || | ||||||||| || ||||||||||||||||
Sbjct: 474 tattcatcgagaaaatcgagtagggcaactctccaccaaactggtttcctgcaagattga 415
Query: 2132 gtttctcaagctt 2144
| ||||||||||
Sbjct: 414 gcctctcaagctt 402
Score = 97.6 bits (49), Expect = 2e-018
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 371 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 312
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 311 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 252
Query: 2295 tcctgagcaagtaatgcccttccatgactggccacaaggatcacccccattcgcctgcca 2354
|||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||| | |||||
Sbjct: 251 tcctgagcaagtgatgccctgccatgattcgccgcaagggtcaccgccattcacttgcca 192
Query: 2355 agctctgagctgcccaggagaattcagactggtgaagagcgtattgagg 2403
|| |||||||||| |||||||||| || ||||||||||| ||||||
Sbjct: 191 gcctttgagctgccccggagaattcaagctagtgaagagcgtgttgagg 143
>gb|AV926836.1|AV926836 AV926836 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23p08 5', mRNA sequence
Length = 545
Score = 119 bits (60), Expect = 5e-025
Identities = 163/196 (83%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 1950 tggtagatcaccagtaagagaattaaaggagagatccagctctgacaaactataaaggtt 2009
|||||| ||||||||||||||||||||||||||||||| || ||| || ||||||
Sbjct: 488 tggtaggtcaccagtaagagaattaaaggagagatccactgttgtcaagctgccaaggtt 429
Query: 2010 ggaaaatacatcag-tgatgtttccttgtagttggttatgattaaggtttaaatacttaa 2068
||||||||| || | | || |||||||||| |||||||| |||| |||||||||||||
Sbjct: 428 ggaaaatacgtcgggtcatttttccttgtaactggttatggttaatatttaaatacttaa 369
Query: 2069 gattaggcatcgtcgaaattgagtagggtaaatttccaccaaattgatttcctgcaagat 2128
||||| ||||| |||| |||||||| || | ||||||||| || |||||||||||||
Sbjct: 368 gattattcatcgagaaaatcgagtagggcaactctccaccaaactggtttcctgcaagat 309
Query: 2129 tgagtttctcaagctt 2144
|||| ||||||||||
Sbjct: 308 tgagcctctcaagctt 293
Score = 97.6 bits (49), Expect = 2e-018
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 262 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 203
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 202 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 143
Query: 2295 tcctgagcaagtaatgcccttccatgactggccacaaggatcacccccattcgcctgcca 2354
|||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||| | |||||
Sbjct: 142 tcctgagcaagtgatgccctgccatgattcgccgcaagggtcaccaccattcacttgcca 83
Query: 2355 agctctgagctgcccaggagaattcagactggtgaagagcgtattgagg 2403
|| |||||||||| |||||||||| || ||||||||||| ||||||
Sbjct: 82 gcctttgagctgccccggagaattcaagctagtgaagagcgtgttgagg 34
>gb|AJ436318.1|AJ436318 AJ436318 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032E07F1, mRNA sequence
Length = 603
Score = 117 bits (59), Expect = 2e-024
Identities = 134/159 (84%)
Strand = Plus / Minus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| |||| | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 399 tcatatgaaatcctggtcctggtcatcgcctcgccgggaagcgtcgccatcgagcatttt 340
Query: 426 cttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattgg 485
|||||||||||||||||||||||| || || |||| || ||||||||||| ||||| ||
Sbjct: 339 cttcgtcatgttggccctctgcacgagacggaccagcgcctgcaccacctccgacatcgg 280
Query: 486 tggcctgaattctggttcaggctggacacacagggcaag 524
|||||||||||| || |||| ||||||||||| ||||||
Sbjct: 279 tggcctgaattccggctcagcctggacacacaaggcaag 241
>gb|AV925676.1|AV925676 AV925676 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd25f19 5', mRNA sequence
Length = 494
Score = 97.6 bits (49), Expect = 2e-018
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 2175 tccaccgccaaggttattttggctcatgtcaagctcaactaatgaacccaagttattcat 2234
|||||| |||||| | || |||||||| |||||||| || ||||||| || | |||||||
Sbjct: 366 tccaccaccaaggctgttctggctcatatcaagctcgaccaatgaactcatggtattcat 307
Query: 2235 gttgtaggccaaatttccagtgagtgacaagtttggtaattggattttagtgacccctga 2294
|||||| ||||||| || | || |||| ||||||||| |||| || ||| ||
Sbjct: 306 attgtagcccaaattcccggacaggcccaagcttggtaatttgattgctgtaaccgacga 247
Query: 2295 tcctgagcaagtaatgcccttccatgactggccacaaggatcacccccattcgcctgcca 2354
|||||||||||| ||||||| |||||| | ||| ||||| ||||| |||||| | |||||
Sbjct: 246 tcctgagcaagtgatgccctgccatgattcgccgcaagggtcaccaccattcacttgcca 187
Query: 2355 agctctgagctgcccaggagaattcagactggtgaagagcgtattgagg 2403
|| |||||||||| |||||||||| || ||||||||||| ||||||
Sbjct: 186 gcctttgagctgccccggagaattcaagctagtgaagagcgtgttgagg 138
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 2056 tttaaatacttaagattaggcatcgtcgaaattgagtagggtaaatttccaccaaattga 2115
|||||||||||||||||| ||||| |||| |||||||| || | ||||||||| ||
Sbjct: 485 tttaaatacttaagattattcatcgagaaaatcgagtagggcaactctccaccaaactgg 426
Query: 2116 tttcctgcaagattgagtttctcaagctt 2144
||||||||||||||||| ||||||||||
Sbjct: 425 tttcctgcaagattgagcctctcaagctt 397
>gb|CA016722.1|CA016722 HV06I03u HV Hordeum vulgare subsp. vulgare cDNA clone HV06I03
3-PRIME, mRNA sequence
Length = 395
Score = 58.0 bits (29), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 366 tcatatgaaatcttggttcaggtcatctggtcgccgagaagtatccccatcaagcatcct 425
|||||||||||| || | | ||||||| |||||| |||| || ||||| ||||| |
Sbjct: 290 tcatatgaaatcctgatcctggtcatcgcctcgccgggaagcgtcgccatcgagcattnt 349
Query: 426 cttcgtcatgttggccctctgcac 449
||||||||||||||||||||||||
Sbjct: 350 cttcgtcatgttggccctctgcac 373
>gb|BF623390.2|BF623390 HVSMEa0016I17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016I17f, mRNA sequence
Length = 858
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 478 gacattggtggcctgaattctggttcaggctg 509
||||||||||||||||||||||| ||||||||
Sbjct: 38 gacattggtggcctgaattctggctcaggctg 7
>gb|BI955091.1|BI955091 HVSMEm0021F01f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0021F01f, mRNA sequence
Length = 696
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1209 atcattgaattgtgccctgtaaacacgtccaaa 1241
||||||||||||||| ||| |||||||||||||
Sbjct: 73 atcattgaattgtgctctgaaaacacgtccaaa 41
>gb|CA000791.1|CA000791 HS06O12u HS Hordeum vulgare subsp. vulgare cDNA clone HS06O12
3-PRIME, mRNA sequence
Length = 519
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 478 gacattggtggcctgaattctggttcaggctg 509
|||||||| ||||||||||||||||| |||||
Sbjct: 436 gacattggcggcctgaattctggttcgggctg 467
>gb|BU990590.1|BU990590 HF25H22r HF Hordeum vulgare subsp. vulgare cDNA clone HF25H22
5-PRIME, mRNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 478 gacattggtggcctgaattctggttc 503
|||||||| |||||||||||||||||
Sbjct: 562 gacattggcggcctgaattctggttc 537
>gb|AL501762.1|AL501762 AL501762 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05E16u 3', mRNA sequence
Length = 408
Score = 42.1 bits (21), Expect = 0.092
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1367 aatcatcatcatcatcaaatg 1387
|||||||||||||||||||||
Sbjct: 29 aatcatcatcatcatcaaatg 49
>gb|BF254175.2|BF254175 HVSMEf0003D17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003D17f, mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 529 acaactccaaaactgtacacatcactctt 501
>gb|BG344861.2|BG344861 HVSMEg0016I08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016I08f, mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.092
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1367 aatcatcatcatcatcaaatg 1387
|||||||||||||||||||||
Sbjct: 472 aatcatcatcatcatcaaatg 452
>gb|AV930770.1|AV930770 AV930770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c22 3', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 448 acaactccaaaactgtacacatcactctt 476
>gb|BU974897.1|BU974897 HB29H02r BC Hordeum vulgare subsp. vulgare cDNA clone HB29H02
5-PRIME, mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 227 acaactccaaaactgtacacatcactctt 199
>gb|BU975651.1|BU975651 HB31N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N14
5-PRIME, mRNA sequence
Length = 337
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 227 acaactccaaaactgtacacatcactctt 199
>gb|BU997444.1|BU997444 HI08A05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08A05
5-PRIME, mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 39 acaactccaaaactgtacacatcactctt 11
>gb|CA023265.1|CA023265 HZ45L11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45L11
5-PRIME, mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 34 acaactccaaaactgtacacatcactctt 6
>gb|CB881355.1|CB881355 HM09I21w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I21
3-PRIME, mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.092
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 577 ggatcgaccatcctgtccaatgcgtcgatgtcatgcagctg 617
|||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 463 ggatcgaccatctggtccagcgcgtcgatgtcgtgcagctg 503
>gb|CV061579.1|CV061579 BNEL6E5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL6E5 5' similar to unknown protein, mRNA
sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.092
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 2463 gcagcagcag-gccagaagcagcagccgc 2490
|||||||||| ||||||||||||||||||
Sbjct: 489 gcagcagcagagccagaagcagcagccgc 461
>gb|CV063330.1|CV063330 BNEL89b3 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL89b3 5' similar to unknown protein, mRNA
sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.092
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 2463 gcagcagcag-gccagaagcagcagccgc 2490
|||||||||| ||||||||||||||||||
Sbjct: 538 gcagcagcagagccagaagcagcagccgc 510
>gb|BF625748.1|BF625748 HVSMEa0013H13f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0013H13f, mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2475 cagaagcagcagccgccgcgccac 2498
||||||||||||| ||||||||||
Sbjct: 183 cagaagcagcagcggccgcgccac 160
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 298,325
Number of Sequences: 312970
Number of extensions: 298325
Number of successful extensions: 91206
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 91131
Number of HSP's gapped (non-prelim): 72
length of query: 2639
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2619
effective length of database: 168,875,139
effective search space: 442283989041
effective search space used: 442283989041
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)