BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943819.2.1
(1121 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 472 e-131
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 347 5e-094
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 347 5e-094
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 345 2e-093
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 323 7e-087
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 323 7e-087
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 307 4e-082
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 307 4e-082
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 299 1e-079
emb|X70880.1|HVMYB2G H.vulgare Myb2 gene 268 4e-070
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 244 5e-063
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 232 2e-059
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 230 8e-059
gb|BF627413.1|BF627413 HVSMEb0004M17f Hordeum vulgare seedl... 147 9e-034
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 141 6e-032
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 127 9e-028
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 111 5e-023
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 111 5e-023
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 111 5e-023
gb|BF254573.2|BF254573 HVSMEf0004G11f Hordeum vulgare seedl... 109 2e-022
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 109 2e-022
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 109 2e-022
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 107 8e-022
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 107 8e-022
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 107 8e-022
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 107 8e-022
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 107 8e-022
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 107 8e-022
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 107 8e-022
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 107 8e-022
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 107 8e-022
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 107 8e-022
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 107 8e-022
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 107 8e-022
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 103 1e-020
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 103 1e-020
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 103 1e-020
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 103 1e-020
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 101 5e-020
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 100 2e-019
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 100 2e-019
gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedl... 96 3e-018
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 92 5e-017
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 88 7e-016
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 82 5e-014
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 82 5e-014
gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgar... 78 7e-013
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 76 3e-012
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 76 3e-012
gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachi... 74 1e-011
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 72 4e-011
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 70 2e-010
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 70 2e-010
gb|CA003603.1|CA003603 HS14P22r HS Hordeum vulgare subsp. v... 70 2e-010
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 70 2e-010
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 68 7e-010
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 68 7e-010
gb|BJ471839.1|BJ471839 BJ471839 K. Sato unpublished cDNA li... 68 7e-010
gb|BI779364.2|BI779364 EBro01_SQ003_M18_R root, 3 week, hyd... 68 7e-010
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 66 3e-009
gb|BQ758841.1|BQ758841 EBma07_SQ003_B01_R maternal, 21 DPA,... 66 3e-009
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 64 1e-008
gb|BI960298.1|BI960298 HVSMEn0024C09f Hordeum vulgare rachi... 64 1e-008
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 64 1e-008
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 64 1e-008
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 62 4e-008
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 60 2e-007
gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hyd... 60 2e-007
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 60 2e-007
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 58 7e-007
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 58 7e-007
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 56 3e-006
gb|BF627007.3|BF627007 HVSMEb0001P06f Hordeum vulgare seedl... 56 3e-006
gb|BQ767987.1|BQ767987 EBro08_SQ010_K07_R root, 3 week, dro... 56 3e-006
gb|BU996911.1|BU996911 HI06D22r HI Hordeum vulgare subsp. v... 56 3e-006
gb|CB883618.1|CB883618 HQ02M15w HQ Hordeum vulgare subsp. v... 56 3e-006
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 56 3e-006
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 56 3e-006
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 56 3e-006
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 56 3e-006
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 56 3e-006
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 56 3e-006
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 56 3e-006
gb|BF630934.2|BF630934 HVSMEb0014H13f Hordeum vulgare seedl... 54 1e-005
gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa... 54 1e-005
gb|BQ768047.1|BQ768047 EBro08_SQ010_E18_R root, 3 week, dro... 54 1e-005
gb|CA011819.1|CA011819 HT03K05r HT Hordeum vulgare subsp. v... 54 1e-005
gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedl... 52 4e-005
gb|BE602657.2|BE602657 HVSMEh0101A05f Hordeum vulgare 5-45 ... 50 2e-004
gb|AV932650.1|AV932650 AV932650 K. Sato unpublished cDNA li... 50 2e-004
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 50 2e-004
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 50 2e-004
gb|BF624570.2|BF624570 HVSMEa0017C12f Hordeum vulgare seedl... 48 6e-004
gb|BF626768.2|BF626768 HVSMEb0001E15f Hordeum vulgare seedl... 48 6e-004
gb|BF253814.2|BF253814 HVSMEf0002D04f Hordeum vulgare seedl... 48 6e-004
gb|BF254202.2|BF254202 HVSMEf0003E22f Hordeum vulgare seedl... 48 6e-004
gb|BI951329.1|BI951329 HVSMEl0025I18f Hordeum vulgare spike... 48 6e-004
gb|BF629578.3|BF629578 HVSMEb0013G13f Hordeum vulgare seedl... 48 6e-004
gb|BF619710.3|BF619710 HVSMEc0008M18f Hordeum vulgare seedl... 48 6e-004
gb|BG344621.2|BG344621 HVSMEg0009N11f Hordeum vulgare pre-a... 48 6e-004
gb|BE193367.3|BE193367 HVSMEh0080L22f Hordeum vulgare 5-45 ... 48 6e-004
gb|AV926961.1|AV926961 AV926961 K. Sato unpublished cDNA li... 48 6e-004
gb|BQ463537.1|BQ463537 HI05K07r HI Hordeum vulgare subsp. v... 48 6e-004
gb|BQ465221.1|BQ465221 HU02P19r HU Hordeum vulgare subsp. v... 48 6e-004
gb|BQ465973.1|BQ465973 HT01D10T HT Hordeum vulgare subsp. v... 48 6e-004
gb|BQ466686.1|BQ466686 HS01E07T HS Hordeum vulgare subsp. v... 48 6e-004
gb|BQ467006.1|BQ467006 HS02E07r HS Hordeum vulgare subsp. v... 48 6e-004
gb|BQ467653.1|BQ467653 HS04H06r HS Hordeum vulgare subsp. v... 48 6e-004
gb|BM377516.2|BM377516 EBem04_SQ003_G01_R embryo, 12 DPA, n... 48 6e-004
gb|BM377971.2|BM377971 EBem04_SQ004_M04_R embryo, 12 DPA, n... 48 6e-004
gb|BM376424.2|BM376424 EBem05_SQ002_D01_R embryo, 14 DPA, n... 48 6e-004
gb|BM376552.2|BM376552 EBem05_SQ002_I20_R embryo, 14 DPA, n... 48 6e-004
gb|BM376643.2|BM376643 EBem05_SQ002_M23_R embryo, 14 DPA, n... 48 6e-004
gb|BM369430.2|BM369430 EBem07_SQ003_I24_R embryo, 28 DPA, n... 48 6e-004
gb|BM368725.2|BM368725 EBem08_SQ004_G24_R embryo, 40 DPA, n... 48 6e-004
gb|BM101037.2|BM101037 EBpi01_SQ002_K14_R pistil, 1 DPA, no... 48 6e-004
gb|BM097096.2|BM097096 EBpi07_SQ002_G06_R pistil, 12 DPA, n... 48 6e-004
gb|BM097244.2|BM097244 EBpi07_SQ002_N18_R pistil, 12 DPA, n... 48 6e-004
gb|BI778787.2|BI778787 EBro01_SQ001_I02_R root, 3 week, hyd... 48 6e-004
gb|BQ756249.1|BQ756249 EBem06_SQ003_G04_R embryo, 21 DPA, n... 48 6e-004
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 48 6e-004
gb|BQ764728.1|BQ764728 EBca01_SQ004_P17_R carpel, pre-anthe... 48 6e-004
gb|BQ765844.1|BQ765844 EBro03_SQ008_G11_R root, 3 week, wat... 48 6e-004
gb|BU973817.1|BU973817 HB26A24r BC Hordeum vulgare subsp. v... 48 6e-004
gb|BU981451.1|BU981451 HA23K14r HA Hordeum vulgare subsp. v... 48 6e-004
gb|BU982125.1|BU982125 HA25J15r HA Hordeum vulgare subsp. v... 48 6e-004
gb|BU996883.1|BU996883 HI06C09r HI Hordeum vulgare subsp. v... 48 6e-004
gb|CA002273.1|CA002273 HS06P16r HS Hordeum vulgare subsp. v... 48 6e-004
gb|CA012996.1|CA012996 HT07B10r HT Hordeum vulgare subsp. v... 48 6e-004
gb|CA021232.1|CA021232 HZ39I02r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA023837.1|CA023837 HZ47I24r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA024890.1|CA024890 HZ50J22r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA024910.1|CA024910 HZ50K20r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA025035.1|CA025035 HZ51A15r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA028393.1|CA028393 HZ61N12r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA030129.1|CA030129 HX06C19r HX Hordeum vulgare subsp. v... 48 6e-004
gb|CV053904.1|CV053904 BNEL104e12 Barley EST endosperm libr... 48 6e-004
gb|CV054246.1|CV054246 BNEL108d3 Barley EST endosperm libra... 48 6e-004
gb|CV055390.1|CV055390 BNEL11A9 Barley EST endosperm librar... 48 6e-004
gb|CV055771.1|CV055771 BNEL123c6 Barley EST endosperm libra... 48 6e-004
gb|CV057877.1|CV057877 BNEL31g8 Barley EST endosperm librar... 48 6e-004
gb|CV059706.1|CV059706 BNEL50a8 Barley EST endosperm librar... 48 6e-004
gb|CV060803.1|CV060803 BNEL61d12 Barley EST endosperm libra... 48 6e-004
gb|CV063152.1|CV063152 BNEL87b8 Barley EST endosperm librar... 48 6e-004
gb|CV063327.1|CV063327 BNEL89b11 Barley EST endosperm libra... 48 6e-004
gb|CV063892.1|CV063892 BNEL94c9 Barley EST endosperm librar... 48 6e-004
gb|CV064252.1|CV064252 BNEL99g7 Barley EST endosperm librar... 48 6e-004
gb|CK122864.1|CK122864 BES1824106g14 BES1824 Hordeum vulgar... 48 6e-004
gb|CK124351.1|CK124351 BES1824108h14 BES1824 Hordeum vulgar... 48 6e-004
gb|CK125091.1|CK125091 BES1824106k23 BES1824 Hordeum vulgar... 48 6e-004
gb|CK125430.1|CK125430 BES1824108c21 BES1824 Hordeum vulgar... 48 6e-004
gb|CK125611.1|CK125611 BES1824109d08 BES1824 Hordeum vulgar... 48 6e-004
gb|AL506341.1|AL506341 AL506341 Hordeum vulgare Barke devel... 46 0.002
gb|BG310410.1|BG310410 HVSMEc0018H20f Hordeum vulgare seedl... 46 0.002
gb|BE216231.3|BE216231 HV_CEb0009O15f Hordeum vulgare seedl... 46 0.002
gb|AV925282.1|AV925282 AV925282 K. Sato unpublished cDNA li... 46 0.002
gb|AV925289.1|AV925289 AV925289 K. Sato unpublished cDNA li... 46 0.002
gb|BJ470546.1|BJ470546 BJ470546 K. Sato unpublished cDNA li... 46 0.002
gb|BQ461130.1|BQ461130 HE01C01r HE Hordeum vulgare subsp. v... 46 0.002
gb|BQ464853.1|BQ464853 HU01O06T HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ467416.1|BQ467416 HS03K24r HS Hordeum vulgare subsp. v... 46 0.002
gb|BQ471003.1|BQ471003 HX04K23r HX Hordeum vulgare subsp. v... 46 0.002
gb|BQ657215.1|BQ657215 HA09D23u HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ739831.1|BQ739831 HB03H11 HB Hordeum vulgare subsp. vu... 46 0.002
gb|BQ753647.1|BQ753647 EBan01_SQ004_N14_R anther, yellow st... 46 0.002
gb|BQ761781.1|BQ761781 EBem10_SQ001_H22_R embryo, 2 Day ger... 46 0.002
gb|BU998616.1|BU998616 HI11K04r HI Hordeum vulgare subsp. v... 46 0.002
gb|CA017928.1|CA017928 HV06N15r HV Hordeum vulgare subsp. v... 46 0.002
gb|CA025410.1|CA025410 HZ52B10r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CA032416.1|CA032416 HX12P13r HX Hordeum vulgare subsp. v... 46 0.002
gb|AL507648.1|AL507648 AL507648 Hordeum vulgare Barke devel... 44 0.010
gb|AL508174.1|AL508174 AL508174 Hordeum vulgare Barke devel... 44 0.010
gb|BI957930.1|BI957930 HVSMEn0012D18f Hordeum vulgare rachi... 44 0.010
gb|BI958541.1|BI958541 HVSMEn0015I01f Hordeum vulgare rachi... 44 0.010
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 44 0.010
gb|BJ472224.1|BJ472224 BJ472224 K. Sato unpublished cDNA li... 44 0.010
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 44 0.010
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 44 0.010
gb|BQ762077.1|BQ762077 EBpi01_SQ005_B20_R pistil, 1 DPA, no... 44 0.010
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 44 0.010
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 44 0.010
gb|CA003004.1|CA003004 HS09C04r HS Hordeum vulgare subsp. v... 44 0.010
gb|CA013094.1|CA013094 HT07F24r HT Hordeum vulgare subsp. v... 44 0.010
gb|CA013588.1|CA013588 HT08O22r HT Hordeum vulgare subsp. v... 44 0.010
gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. v... 44 0.010
gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. v... 44 0.010
gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. v... 44 0.010
gb|CA021995.1|CA021995 HZ41N06r HZ Hordeum vulgare subsp. v... 44 0.010
gb|CA023089.1|CA023089 HZ45D09r HZ Hordeum vulgare subsp. v... 44 0.010
gb|CA023149.1|CA023149 HZ45F24r HZ Hordeum vulgare subsp. v... 44 0.010
gb|CA026406.1|CA026406 HZ55N06r HZ Hordeum vulgare subsp. v... 44 0.010
gb|CA028545.1|CA028545 HZ62G03r HZ Hordeum vulgare subsp. v... 44 0.010
gb|CA031144.1|CA031144 HX09C08r HX Hordeum vulgare subsp. v... 44 0.010
gb|CA031437.1|CA031437 HX09P03r HX Hordeum vulgare subsp. v... 44 0.010
gb|CB875716.1|CB875716 HX09C08w HX Hordeum vulgare subsp. v... 44 0.010
gb|CB875989.1|CB875989 HX09P03w HX Hordeum vulgare subsp. v... 44 0.010
gb|CV060037.1|CV060037 BNEL53f8 Barley EST endosperm librar... 44 0.010
gb|CK125323.1|CK125323 BES1824107l02 BES1824 Hordeum vulgar... 44 0.010
gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (... 44 0.010
emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein 44 0.010
gb|AL450574.1|AL450574 AL450574 Hordeum vulgare Barke etiol... 42 0.039
gb|AL450576.1|AL450576 AL450576 Hordeum vulgare Barke etiol... 42 0.039
gb|BF621503.2|BF621503 HVSMEa0011D11f Hordeum vulgare seedl... 42 0.039
gb|BF621514.2|BF621514 HVSMEa0011D22f Hordeum vulgare seedl... 42 0.039
gb|BF259682.1|BF259682 HVSMEf0019P18f Hordeum vulgare seedl... 42 0.039
gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedl... 42 0.039
gb|BF627188.2|BF627188 HVSMEb0004C24f Hordeum vulgare seedl... 42 0.039
gb|BF629793.2|BF629793 HVSMEb0013N17f Hordeum vulgare seedl... 42 0.039
gb|BF254961.2|BF254961 HVSMEf0005I17f Hordeum vulgare seedl... 42 0.039
gb|BG343527.1|BG343527 HVSMEg0006E18f Hordeum vulgare pre-a... 42 0.039
gb|BE602918.2|BE602918 HVSMEh0100P09f Hordeum vulgare 5-45 ... 42 0.039
gb|BI952006.1|BI952006 HVSMEm0004D05f Hordeum vulgare green... 42 0.039
gb|BF262887.2|BF262887 HV_CEa0005D20f Hordeum vulgare seedl... 42 0.039
gb|BE215888.2|BE215888 HV_CEb0008M03f Hordeum vulgare seedl... 42 0.039
gb|BI959953.1|BI959953 HVSMEn0022J09f Hordeum vulgare rachi... 42 0.039
gb|AW982193.3|AW982193 HVSMEg0002C22f Hordeum vulgare pre-a... 42 0.039
gb|BG344708.2|BG344708 HVSMEg0015E16f Hordeum vulgare pre-a... 42 0.039
gb|BE194121.3|BE194121 HVSMEh0084C06f Hordeum vulgare 5-45 ... 42 0.039
gb|BQ467933.1|BQ467933 HR01G08r HR Hordeum vulgare subsp. v... 42 0.039
gb|BQ762716.1|BQ762716 EBro02_SQ004_I19_R root, 3 week, hyd... 42 0.039
gb|BQ764986.1|BQ764986 EBca01_SQ005_O12_R carpel, pre-anthe... 42 0.039
gb|CA004023.1|CA004023 HS16E24r HS Hordeum vulgare subsp. v... 42 0.039
gb|CA004268.1|CA004268 HS17B12r HS Hordeum vulgare subsp. v... 42 0.039
gb|CA004464.1|CA004464 HS17K22r HS Hordeum vulgare subsp. v... 42 0.039
gb|CA004595.1|CA004595 HS18B14r HS Hordeum vulgare subsp. v... 42 0.039
gb|AU090119.1|AU090119 AU090119 Hordeum vulgare subsp. vulg... 40 0.15
gb|AU090145.1|AU090145 AU090145 Hordeum vulgare subsp. vulg... 40 0.15
gb|BF626112.3|BF626112 HVSMEa0015N09f Hordeum vulgare seedl... 40 0.15
gb|BF627741.2|BF627741 HVSMEb0005K20f Hordeum vulgare seedl... 40 0.15
gb|BF628507.2|BF628507 HVSMEb0006F13f Hordeum vulgare seedl... 40 0.15
gb|BF618255.2|BF618255 HVSMEc0005C24f Hordeum vulgare seedl... 40 0.15
gb|BF261037.2|BF261037 HVSMEf0023J13f Hordeum vulgare seedl... 40 0.15
gb|BE602532.2|BE602532 HVSMEh0099L08f Hordeum vulgare 5-45 ... 40 0.15
gb|BF262151.2|BF262151 HV_CEa0003H12f Hordeum vulgare seedl... 40 0.15
gb|BI958683.1|BI958683 HVSMEn0016D10f Hordeum vulgare rachi... 40 0.15
gb|BI959123.1|BI959123 HVSMEn0018E11f Hordeum vulgare rachi... 40 0.15
gb|BF260545.3|BF260545 HVSMEf0022E17f Hordeum vulgare seedl... 40 0.15
gb|BF267220.3|BF267220 HV_CEa0017E19f Hordeum vulgare seedl... 40 0.15
gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. v... 40 0.15
gb|BQ466957.1|BQ466957 HS02B18r HS Hordeum vulgare subsp. v... 40 0.15
gb|BM441963.2|BM441963 EBan01_SQ001_D01_R anther, yellow st... 40 0.15
gb|BM442057.2|BM442057 EBan01_SQ002_A23_R anther, yellow st... 40 0.15
gb|BM442130.2|BM442130 EBan01_SQ002_E21_R anther, yellow st... 40 0.15
gb|BM442469.2|BM442469 EBan01_SQ003_E09_R anther, yellow st... 40 0.15
gb|BM442485.2|BM442485 EBan01_SQ003_F02_R anther, yellow st... 40 0.15
gb|BM442608.2|BM442608 EBan01_SQ003_K12_R anther, yellow st... 40 0.15
gb|BM442626.2|BM442626 EBan01_SQ003_L09_R anther, yellow st... 40 0.15
gb|BM376918.2|BM376918 EBem05_SQ003_J13_R embryo, 14 DPA, n... 40 0.15
gb|BM377261.2|BM377261 EBem05_SQ004_J15_R embryo, 14 DPA, n... 40 0.15
gb|BM099549.2|BM099549 EBes01_SQ003_J03_R embryo sac, 4-6 D... 40 0.15
gb|BM371953.2|BM371953 EBma08_SQ004_H24_R maternal, 28 DPA,... 40 0.15
gb|BM442854.2|BM442854 EBro02_SQ001_J04_R root, 3 week, hyd... 40 0.15
gb|BM443230.2|BM443230 EBro02_SQ003_D18_R root, 3 week, hyd... 40 0.15
gb|BQ763336.1|BQ763336 EBro02_SQ008_B05_R root, 3 week, hyd... 40 0.15
gb|BQ764227.1|BQ764227 EBan01_SQ005_B07_R anther, yellow st... 40 0.15
gb|BQ764376.1|BQ764376 EBan01_SQ005_M17_R anther, yellow st... 40 0.15
gb|BQ765308.1|BQ765308 EBro03_SQ006_F20_R root, 3 week, wat... 40 0.15
gb|BQ768765.1|BQ768765 EBro08_SQ012_J14_R root, 3 week, dro... 40 0.15
gb|CA002490.1|CA002490 HS07K15r HS Hordeum vulgare subsp. v... 40 0.15
gb|CA029197.1|CA029197 HZ64I02r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CB883961.1|CB883961 HM05N02r HM Hordeum vulgare subsp. v... 40 0.15
gb|CB884002.1|CB884002 HM08N07r HM Hordeum vulgare subsp. v... 40 0.15
gb|CB884076.1|CB884076 HM13H13r HM Hordeum vulgare subsp. v... 40 0.15
gb|CV062826.1|CV062826 BNEL83e10 Barley EST endosperm libra... 40 0.15
gb|CV063744.1|CV063744 BNEL92g1 Barley EST endosperm librar... 40 0.15
emb|AJ270056.1|HVU270056 Hordeum vulgare DNA including full... 40 0.15
emb|AJ249146.1|HVU249146 Hordeum vulgare mRNA for MADS-box ... 40 0.15
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 472 bits (238), Expect = e-131
Identities = 343/378 (90%)
Strand = Plus / Minus
Query: 744 cggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttccag 803
|||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||
Sbjct: 447 cggtgcgtgacggggtcgatccccctgccgagcagcttcctccggatgtgcgtgttccag 388
Query: 804 tagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttg 863
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct: 387 tagttcttgatctcgttgtccgtcctccccggcaggcgcgcggcgatgagcgaccacttg 328
Query: 864 ttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccg 923
|| |||||||||||||| |||||||||||||| |||||||||||| | |||||||||||
Sbjct: 327 ttgccgaggaggctgtggagcttgacgatgagctcgtcctcgtcgcggctgaagttgccg 268
Query: 924 cgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgc 983
||||| |||||||| ||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 267 cgcttgaggtcggggcggaggtagttgatccacctgaggcggcagctcttgccgcagcgc 208
Query: 984 agcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcggatgtag 1043
|||||||| || || |||||||||| ||||||||||| || |||||||| |||| || |
Sbjct: 207 agcaggccggcggcgctgggcagcgagcgccagcacccctccccgtgcgcccggacgtgg 148
Query: 1044 gccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgccttctcg 1103
|||||||| ||||||||||||||| | |||||||||||| |||| |||||||||||||||
Sbjct: 147 gccaccagccgctcgtcctcctccctcgtccacgcgcccttgttcgtgtgcgccttctcg 88
Query: 1104 cagcagggcgaccgcccc 1121
||||| ||||||||||||
Sbjct: 87 cagcacggcgaccgcccc 70
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 347 bits (175), Expect = 5e-094
Identities = 292/331 (88%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgat 850
|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||
Sbjct: 384 gtgcgtgttccagtagttcttgatctcgttgtccgtcctgcccggcagctggccggcgat 325
Query: 851 gagcgaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggc 910
||| ||||||||||| ||||| |||||||| || || |||||| |||||||||||| |
Sbjct: 324 gagagaccacttgttgccgagtaggctgtggaggcggatgatgagctcgtcctcgtcgtc 265
Query: 911 ggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagct 970
|||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct: 264 ggtgaagttgccgcgcttgaggtcggggcggaggtagttcatccagcggaggcggcagct 205
Query: 971 cttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtg 1030
||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 204 cttgccgcagcgcagcaggcccgccgccttgggcagcgagcgccagcagccctcgccgtt 145
Query: 1031 cgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggt 1090
|| | ||||||||| | ||| |||| ||||||||||||||||||||| ||| |||||||
Sbjct: 144 ggccctgatgtaggcgatcagccgctggtcctcctccttggtccacgcccccttgttggt 85
Query: 1091 gtgcgccttctcgcagcagggcgaccgcccc 1121
|||| ||||||||||||| ||||||| ||||
Sbjct: 84 gtgctccttctcgcagcacggcgacctcccc 54
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 609 aggtcgaggttgaggtcggggca 631
|||||||||||||||||||||||
Sbjct: 635 aggtcgaggttgaggtcggggca 613
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 347 bits (175), Expect = 5e-094
Identities = 292/331 (88%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgat 850
|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||
Sbjct: 376 gtgcgtgttccagtagttcttgatctcgttgtccgtcctgcccggcagctggccggcgat 317
Query: 851 gagcgaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggc 910
||| ||||||||||| ||||| |||||||| || || |||||| |||||||||||| |
Sbjct: 316 gagagaccacttgttgccgagcaggctgtggaggcggatgatgagctcgtcctcgtcgtc 257
Query: 911 ggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagct 970
|||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct: 256 ggtgaagttgccgcgcttgaggtcggggcggaggtagttcatccagcggaggcggcagct 197
Query: 971 cttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtg 1030
||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 196 cttgccgcagcgcagcaggcccgccgccttgggcagcgagcgccagcagccctcgccgtt 137
Query: 1031 cgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggt 1090
|| | ||||||||| | ||| |||| ||||||||||||||||||||| ||| |||||||
Sbjct: 136 ggccctgatgtaggcgatcagccgctggtcctcctccttggtccacgcccccttgttggt 77
Query: 1091 gtgcgccttctcgcagcagggcgaccgcccc 1121
|||| ||||||||||||| ||||||| ||||
Sbjct: 76 gtgctccttctcgcagcacggcgacctcccc 46
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 609 aggtcgaggttgaggtcggggca 631
|||||||||||||||||||||||
Sbjct: 627 aggtcgaggttgaggtcggggca 605
>gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022A15f, mRNA sequence
Length = 838
Score = 345 bits (174), Expect = 2e-093
Identities = 331/382 (86%), Gaps = 1/382 (0%)
Strand = Plus / Minus
Query: 741 gggcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttc 800
||||||||||||||| ||| | ||||||| ||||||||| | ||| ||||||||||
Sbjct: 563 gggcggtgcgtgacgtggtgagtccccctgcgaagcagcttcttcgggatgtgcgtgttc 504
Query: 801 cagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccac 860
|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 503 cagtagttcttgatctcgttgtccgtcctccccggcaggcgcgcggcgatgagcgaccac 444
Query: 861 ttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttg 920
||||| | |||||||||||| |||||||||||||| |||||||||||| | |||||
Sbjct: 443 ttgttgcggaggaggctgtggagcttgacgatgagctcgtcctcgtcgcgtctcaagttc 384
Query: 921 ccgcg-cttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgca 979
|||| ||| |||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct: 383 acgcgccttgaggtcggggcggaggtagttgatccacgtgaggcggcagctcttgccgca 324
Query: 980 ccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcggat 1039
|||||||| || | || |||||||||| ||||||||||| || |||||||| ||||
Sbjct: 323 gcgcagcagaccgtcggcgctgggcagcgagcgccagcacccctcaccgtgcgcccggac 264
Query: 1040 gtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgcctt 1099
|| ||||||||| ||||||||||||||| | |||||||||||| |||| |||||||||||
Sbjct: 263 gtgggccaccagccgctcgtcctcctccgtcgtccacgcgcccttgttcgtgtgcgcctt 204
Query: 1100 ctcgcagcagggcgaccgcccc 1121
||||||||| ||||||||||||
Sbjct: 203 ctcgcagcacggcgaccgcccc 182
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024E22f,
mRNA sequence
Length = 669
Score = 323 bits (163), Expect = 7e-087
Identities = 325/379 (85%)
Strand = Plus / Minus
Query: 743 gcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttcca 802
|||||| || || |||||||| |||| || | |||||||| ||||| ||||||||||||
Sbjct: 452 gcggtgggtcaccgggtcgatcccccggctcgtcagcttcctccggatgtgcgtgttcca 393
Query: 803 gtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccactt 862
|||||||||||||||||||||||||| |||||| || | | |||| || || ||||| ||
Sbjct: 392 gtagttcttgatctcgttgtccgtcctccccggcagtctcccggctatcagggaccattt 333
Query: 863 gttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgcc 922
||| || ||||||||||| ||||||| |||||| |||||||| ||| | ||||||||||
Sbjct: 332 gttgcccaggaggctgtggagcttgatgatgagctcgtcctcctcgtggctgaagttgcc 273
Query: 923 gcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccg 982
|||||| |||||||| ||||||||||||||||| || || ||||||||||||||||| ||
Sbjct: 272 gcgcttgaggtcggggcggaggtagttgatccagcggaggcggcagctcttgccgcagcg 213
Query: 983 cagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcggatgta 1042
|||||||| || ||||||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 212 gagcaggccggcggccttgggcagggagcgccagcagccctcgccgtgcgccttgatgta 153
Query: 1043 ggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgccttctc 1102
||| || || |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 152 ggcggtgagccggtcgtcctcctccttggtccaggcgcccttgttggtgtgcgccttctc 93
Query: 1103 gcagcagggcgaccgcccc 1121
|||||| ||||||| ||||
Sbjct: 92 gcagcacggcgacctcccc 74
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 323 bits (163), Expect = 7e-087
Identities = 325/379 (85%)
Strand = Plus / Minus
Query: 743 gcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttcca 802
|||||| || || |||||||| |||| || | |||||||| ||||| ||||||||||||
Sbjct: 592 gcggtgggtcaccgggtcgatcccccggctcgtcagcttcctccggatgtgcgtgttcca 533
Query: 803 gtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccactt 862
|||||||||||||||||||||||||| |||||| || | | |||| || || ||||| ||
Sbjct: 532 gtagttcttgatctcgttgtccgtcctccccggcagtctcccggctatcagggaccattt 473
Query: 863 gttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgcc 922
||| || ||||||||||| ||||||| |||||| |||||||| ||| | ||||||||||
Sbjct: 472 gtttcccaggaggctgtggagcttgatgatgagctcgtcctcctcgtggctgaagttgcc 413
Query: 923 gcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccg 982
|||||| |||||||| ||||||||||||||||| || || ||||||||||||||||| ||
Sbjct: 412 gcgcttgaggtcggggcggaggtagttgatccagcggaggcggcagctcttgccgcagcg 353
Query: 983 cagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcggatgta 1042
|||||||| || ||||||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 352 gagcaggccggcggccttgggcagggagcgccagcagccctcgccgtgcgccttgatgta 293
Query: 1043 ggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgccttctc 1102
||| || || |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 292 ggcggtgagtcggtcgtcctcctccttggtccaggcgcccttgttggtgtgcgccttctc 233
Query: 1103 gcagcagggcgaccgcccc 1121
|||||| ||||||| ||||
Sbjct: 232 gcagcacggcgacctcccc 214
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 307 bits (155), Expect = 4e-082
Identities = 287/331 (86%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgat 850
||||||||||||||||||||||||||||||||||||||| || |||||| || | || ||
Sbjct: 412 gtgcgtgttccagtagttcttgatctcgttgtccgtccggccggggagctgccccgctat 353
Query: 851 gagcgaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggc 910
| |||||||||||| ||||||||| ||| ||||||| |||||| ||||| |||||| |
Sbjct: 352 caacgaccacttgttgccgaggagggcgtggagcttgatgatgagctcgtcgtcgtcgtc 293
Query: 911 ggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagct 970
|||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||||||
Sbjct: 292 ggtgaagttgccgcgcttgaggtcagggcggaggtagttcatccagcggaggcggcagct 233
Query: 971 cttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtg 1030
||||||||| || || ||||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 232 cttgccgcagcggaggaggccggcggccttgggcagcgagcgccagcagccctcgccgtg 173
Query: 1031 cgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggt 1090
|| ||||||| | | |||||||| |||||||||||||||||| || ||| |||||||
Sbjct: 172 ggccttgatgtagccgatcaggcgctggtcctcctccttggtccaagcccccttgttggt 113
Query: 1091 gtgcgccttctcgcagcagggcgaccgcccc 1121
|||||||||||||||||| ||||||| ||||
Sbjct: 112 gtgcgccttctcgcagcacggcgacctcccc 82
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 307 bits (155), Expect = 4e-082
Identities = 287/331 (86%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgat 850
||||||||||||||||||||||||||||||||||||||| || |||||| || | || ||
Sbjct: 412 gtgcgtgttccagtagttcttgatctcgttgtccgtccggccggggagctgccccgctat 353
Query: 851 gagcgaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggc 910
| |||||||||||| ||||||||| ||| ||||||| |||||| ||||| |||||| |
Sbjct: 352 caacgaccacttgttgccgaggagggcgtggagcttgatgatgagctcgtcgtcgtcgtc 293
Query: 911 ggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagct 970
|||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||||||
Sbjct: 292 ggtgaagttgccgcgcttgaggtcagggcggaggtagttcatccagcggaggcggcagct 233
Query: 971 cttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtg 1030
||||||||| || || ||||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 232 cttgccgcagcggaggaggccggcggccttgggcagcgagcgccagcagccctcgccgtg 173
Query: 1031 cgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggt 1090
|| ||||||| | | |||||||| |||||||||||||||||| || ||| |||||||
Sbjct: 172 ggccttgatgtagccgatcaggcgctggtcctcctccttggtccaagcccccttgttggt 113
Query: 1091 gtgcgccttctcgcagcagggcgaccgcccc 1121
|||||||||||||||||| ||||||| ||||
Sbjct: 112 gtgcgccttctcgcagcacggcgacctcccc 82
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 299 bits (151), Expect = 1e-079
Identities = 286/331 (86%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgat 850
|||||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||
Sbjct: 368 gtgcgtgttccagtagtttttgatctcgttgtccgtcctgcccggcagctggccggcgat 309
Query: 851 gagcgaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggc 910
||| ||||||||||| ||||| |||||||| || || |||||| ||||||| |||| |
Sbjct: 308 gagagaccacttgttgccgagtaggctgtgtagacggatgatgagctcgtcctagtcgtc 249
Query: 911 ggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagct 970
|||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct: 248 ggtgaagttgccgcgcttgaggtcggggcggaggtagttcatccagcggaggcggcagct 189
Query: 971 cttgccgcaccgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtg 1030
||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 188 cttgccgcagcgcagcaggcccgccgccttgggcagcgagcgccagcagccctcgccgtt 129
Query: 1031 cgcgcggatgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggt 1090
|| | ||||||||| | ||| |||| |||||||||| |||||||||| ||| |||||||
Sbjct: 128 ggccctgatgtaggcgatcagccgctggtcctcctccgtggtccacgcccccttgttggt 69
Query: 1091 gtgcgccttctcgcagcagggcgaccgcccc 1121
||| ||||||| |||| ||||||| ||||
Sbjct: 68 gtgttccttctctcagcccggcgacctcccc 38
>emb|X70880.1|HVMYB2G H.vulgare Myb2 gene
Length = 1093
Score = 268 bits (135), Expect = 4e-070
Identities = 231/263 (87%)
Strand = Plus / Minus
Query: 859 acttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagt 918
||||||| |||||||||||||| || || |||||| |||||||||||| |||||||||
Sbjct: 910 acttgttgccgaggaggctgtggaggcggatgatgagctcgtcctcgtcgtcggtgaagt 851
Query: 919 tgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgc 978
||||||| || |||||||| ||||||||||| ||||| || || ||||||||||||||||
Sbjct: 850 tgccgcgtttgaggtcggggcggaggtagttcatccagcggaggcggcagctcttgccgc 791
Query: 979 accgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcgga 1038
| ||||||||||||||||||||||||||||| |||||||| || ||||||| || | ||
Sbjct: 790 agcgcagcaggcccgccgccttgggcagcgagcgccagcagccctcgccgttggccctga 731
Query: 1039 tgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgcct 1098
||||||| | ||| |||| ||||||||||||||||||||| ||| ||||||||||| |||
Sbjct: 730 tgtaggcgatcagccgctggtcctcctccttggtccacgcccccttgttggtgtgctcct 671
Query: 1099 tctcgcagcagggcgaccgcccc 1121
|||||||||| ||||||| ||||
Sbjct: 670 tctcgcagcacggcgacctcccc 648
Score = 42.1 bits (21), Expect = 0.039
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 812 gatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccac 860
||||||||||||||||| ||||| ||| | |||||||||| ||||||
Sbjct: 1093 gatctcgttgtccgtcctgcccggcagctggccggcgatgagagaccac 1045
>emb|X70879.1|HVMYB1G H.vulgare Myb1 gene
Length = 2587
Score = 244 bits (123), Expect = 5e-063
Identities = 228/263 (86%)
Strand = Plus / Minus
Query: 859 acttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagt 918
||||||| || ||||||||||| ||||||| |||||| |||||||| ||| | ||||||
Sbjct: 1266 acttgtttcccaggaggctgtggagcttgatgatgagctcgtcctcctcgtggctgaagt 1207
Query: 919 tgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgc 978
|||||||||| |||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 1206 tgccgcgcttgaggtcggggcggaggtagttgatccagcggaggcggcagctcttgccgc 1147
Query: 979 accgcagcaggcccgccgccttgggcagcgaccgccagcacccttcgccgtgcgcgcgga 1038
| || |||||||| || ||||||||||| || |||||||| || ||||||||||| ||
Sbjct: 1146 agcggagcaggccggcggccttgggcagggagcgccagcagccctcgccgtgcgccttga 1087
Query: 1039 tgtaggccaccaggcgctcgtcctcctccttggtccacgcgcccctgttggtgtgcgcct 1098
||||||| || || |||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1086 tgtaggcggtgagtcggtcgtcctcctccttggtccaggcgcccttgttggtgtgcgcct 1027
Query: 1099 tctcgcagcagggcgaccgcccc 1121
|||||||||| ||||||| ||||
Sbjct: 1026 tctcgcagcacggcgacctcccc 1004
Score = 97.6 bits (49), Expect = 8e-019
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 743 gcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttcca 802
|||||| || || |||||||| |||| || | |||||||| ||||| ||||||||||||
Sbjct: 1528 gcggtgggtcaccgggtcgatcccccggctcgtcagcttcctccggatgtgcgtgttcca 1469
Query: 803 gtagttcttgatctcgttgtccgtccgccccgg 835
|||||||||||||||||||||||||| ||||||
Sbjct: 1468 gtagttcttgatctcgttgtccgtcctccccgg 1436
>gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. vulgare cDNA clone HV11C18
5-PRIME, mRNA sequence
Length = 583
Score = 232 bits (117), Expect = 2e-059
Identities = 228/265 (86%)
Strand = Plus / Minus
Query: 743 gcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttcca 802
|||||| || || |||||||| |||| || | |||||||| ||||| ||||||||||||
Sbjct: 274 gcggtgggtcaccgggtcgatcccccggctcgtcagcttcctccggatgtgcgtgttcca 215
Query: 803 gtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccactt 862
|||||||||||||||||||||||||| |||||| || | | |||| || || ||||| ||
Sbjct: 214 gtagttcttgatctcgttgtccgtcctccccggcagtctcccggctatcagggaccattt 155
Query: 863 gttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgcc 922
||| || ||||||||||| ||||||| |||||| |||||||| ||| | ||||||||||
Sbjct: 154 gttgcccaggaggctgtggagcttgatgatgagctcgtcctcctcgtggctgaagttgcc 95
Query: 923 gcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccg 982
|||||| |||||||| ||||||||||||||||| || || ||||||||||||||||| ||
Sbjct: 94 gcgcttgaggtcggggcggaggtagttgatccagcggaggcggcagctcttgccgcagcg 35
Query: 983 cagcaggcccgccgccttgggcagc 1007
|||||||| || ||||||||||||
Sbjct: 34 gagcaggccggcggccttgggcagc 10
>gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0013M24f,
mRNA sequence
Length = 471
Score = 230 bits (116), Expect = 8e-059
Identities = 261/308 (84%), Gaps = 1/308 (0%)
Strand = Plus / Minus
Query: 815 ctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttgttcccgaggag 874
|||||||||||||| |||||| |||| | |||||||||||||||||||||| ||||| ||
Sbjct: 471 ctcgttgtccgtcctccccggcagcctcccggcgatgagcgaccacttgttgccgagcag 412
Query: 875 gctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcgcttcaggtc 934
||| ||||||| |||||| |||||||| || |||||||||| || ||||| |||||
Sbjct: 411 ctcgtggagcttgatgatgagctcgtcctcctcctcggtgaagttcccccgcttgaggtc 352
Query: 935 gggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgcagcaggcccgc 994
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| || ||
Sbjct: 351 cggcctcaggtagttgatccaccgcagcctgcagctcttcccgcaccgcagcagccctgc 292
Query: 995 cgccttgggcagcgaccgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcg 1054
|| ||||| || |||| |||||| || ||||| || || ||||||||| || |||||
Sbjct: 291 ggctttggggagggacctccagcagccctcgccatgggccttgatgtaggcgacgaggcg 232
Query: 1055 ctcgtcctcctccttggtccacgcgcccctgttggtgtgcgccttc-tcgcagcagggcg 1113
|| |||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |
Sbjct: 231 ctggtcctcctccttggtccaggcgcctttgttggtgtgcgccttcttcgcagcacgggg 172
Query: 1114 accgcccc 1121
||| ||||
Sbjct: 171 acctcccc 164
>gb|BF627413.1|BF627413 HVSMEb0004M17f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0004M17f, mRNA sequence
Length = 773
Score = 147 bits (74), Expect = 9e-034
Identities = 110/122 (90%)
Strand = Plus / Minus
Query: 1000 tgggcagcgaccgccagcacccttcgccgtgcgcgcggatgtaggccaccaggcgctcgt 1059
|||||||||| ||||||||||| || |||||||| |||| || ||||||||| |||||||
Sbjct: 198 tgggcagcgagcgccagcacccctccccgtgcgcccggacgtgggccaccagccgctcgt 139
Query: 1060 cctcctccttggtccacgcgcccctgttggtgtgcgccttctcgcagcagggcgaccgcc 1119
|||||||| | |||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct: 138 cctcctccctcgtccacgcgcccttgttcgtgtgcgccttctcgcagcacggcgaccgcc 79
Query: 1120 cc 1121
||
Sbjct: 78 cc 77
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 141 bits (71), Expect = 6e-032
Identities = 158/187 (84%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagc 854
||||||||||||||||||||||| ||||| || |||||||| |||||| | ||||| |||
Sbjct: 353 gtgttccagtagttcttgatctcattgtctgttcgccccggcagccgccccgcgatcagc 294
Query: 855 gaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtg 914
|||||| |||| || || | ||||| ||| |||||||||| || ||||||||| ||| |
Sbjct: 293 gaccacctgttgcctagcaacctgtggagcctgacgatgagctcctcctcgtcgtcggag 234
Query: 915 aagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttg 974
| |||||| | ||| | | |||||||||||||||| |||||||||||||||||||||
Sbjct: 233 atgttgcctctcttgatccccggccggaggtagttgagccaccgcagccggcagctcttc 174
Query: 975 ccgcacc 981
|||||||
Sbjct: 173 ccgcacc 167
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 127 bits (64), Expect = 9e-028
Identities = 157/188 (83%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagc 854
||||||||||||||||||||||||||||||||||| || || ||| |||| ||||| |
Sbjct: 431 gtgttccagtagttcttgatctcgttgtccgtccggccgggcagctgcgccgcgatcatg 372
Query: 855 gaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtg 914
||||||||||| |||| || | ||| |||| || |||| | || ||| |||| ||||
Sbjct: 371 gaccacttgttgccgacgatggcgtggagctggaggatggacttgtgctcttcgggggtg 312
Query: 915 aagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttg 974
||| |||||||| | ||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 311 aagggcccgcgcttgatgtccggccggaggtagttcgtccaccgcagccggcagctcttg 252
Query: 975 ccgcaccg 982
||||||||
Sbjct: 251 ccgcaccg 244
>gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07F08V 5',
mRNA sequence
Length = 631
Score = 111 bits (56), Expect = 5e-023
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 902 ctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcag 961
||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||
Sbjct: 154 ctcgtcggcggtgaagttgccgcgcttcacgtcggggcggaggtagttcagccaccgcag 95
Query: 962 ccggcagctctt 973
||||||||||||
Sbjct: 94 ccggcagctctt 83
Score = 71.9 bits (36), Expect = 4e-011
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 799 tccagtagttcttgatctcgttgtccgtccgccccgggag 838
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 257 tccagtagttcttgatctcgttgtccgtccgacccgggag 218
>gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025K10f, mRNA sequence
Length = 718
Score = 111 bits (56), Expect = 5e-023
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 902 ctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcag 961
||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||
Sbjct: 320 ctcgtcggcggtgaagttgccgcgcttcacgtcggggcggaggtagttcagccaccgcag 261
Query: 962 ccggcagctctt 973
||||||||||||
Sbjct: 260 ccggcagctctt 249
Score = 65.9 bits (33), Expect = 3e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 799 tccagtagttcttgatctcgttgtccgtccgccccgg 835
||||||||||||||||||||||||||||||| |||||
Sbjct: 423 tccagtagttcttgatctcgttgtccgtccgacccgg 387
>gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. vulgare cDNA clone HP05O05
5-PRIME, mRNA sequence
Length = 520
Score = 111 bits (56), Expect = 5e-023
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 902 ctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcag 961
||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||
Sbjct: 327 ctcgtcggcggtgaagttgccgcgcttcacgtcggggcggaggtagttcagccaccgcag 268
Query: 962 ccggcagctctt 973
||||||||||||
Sbjct: 267 ccggcagctctt 256
Score = 71.9 bits (36), Expect = 4e-011
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 799 tccagtagttcttgatctcgttgtccgtccgccccgggag 838
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 tccagtagttcttgatctcgttgtccgtccgacccgggag 391
>gb|BF254573.2|BF254573 HVSMEf0004G11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004G11f, mRNA sequence
Length = 867
Score = 109 bits (55), Expect = 2e-022
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 741 gggcggtgcgtgacggggtcgatgcccctgcccagcagcttccgccggacgtgcgtgttc 800
||||||||||||||||||||||||||| |||| ||||||||| || | ||||||||||
Sbjct: 83 gggcggtgcgtgacggggtcgatgcccatgccgagcagcttcttgcgtaggtgcgtgttc 24
Query: 801 cagtagttcttgatctcgttgtc 823
|||||||||||||||||||||||
Sbjct: 23 cagtagttcttgatctcgttgtc 1
>gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114B11_SK.ab1 similar to myb protein homolog - rice
gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa],
mRNA sequence
Length = 879
Score = 109 bits (55), Expect = 2e-022
Identities = 172/211 (81%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttgtt 865
||||||||||||||||||||||| ||| || |||| ||||| ||| ||||| ||||
Sbjct: 481 gttcttgatctcgttgtccgtcctcccaggaagcctggcggcaatggtggaccatctgtt 422
Query: 866 cccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcg 925
||||| | | ||| |||| || |||| ||| ||||| ||| |||||||||||||||
Sbjct: 421 gccgagcatggcgtggagctggatgatggcgtcctcctcctcgctggtgaagttgccgcg 362
Query: 926 cttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgcag 985
||| | |||||| || ||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 361 cttgatgtcggggcgcaggtagttgatccaccggaggcgacagctcttgccgcagcgcag 302
Query: 986 caggcccgccgccttgggcagcgaccgccag 1016
|||||| ||| || ||||||| |||||||
Sbjct: 301 caggccggcctgattcggcagcgcccgccag 271
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 109 bits (55), Expect = 2e-022
Identities = 154/187 (82%)
Strand = Plus / Minus
Query: 797 gttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcga 856
||||||| ||||||||||||||||||| || |||||||| | || || ||||| | ||
Sbjct: 472 gttccagaagttcttgatctcgttgtcggtgcgccccggtaacctggctgcgatctgaga 413
Query: 857 ccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaa 916
||| |||| ||||||| | ||| || |||||||||||||| ||||| | | | |||
Sbjct: 412 ccatctgttgccgaggatggcgtggaggttgacgatgaggtcctcctcatgtggcgagaa 353
Query: 917 gttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgcc 976
| ||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct: 352 ggcgccgcgcttgaggtccggacggaggtagttgatccaccggaggcggcagctcttgcc 293
Query: 977 gcaccgc 983
|||||||
Sbjct: 292 gcaccgc 286
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 353 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 294
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 293 agccggcagctcttgccgcaccgcag 268
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 447 gttcttgatctcgttgtccgtcctccccggcagcc 413
>gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G13f, mRNA sequence
Length = 673
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 174 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 115
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 114 agccggcagctcttgccgcaccgcag 89
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||| ||||||||||| |||||| ||||
Sbjct: 268 gttcttgatctagttgtccgtcctccccggcagcc 234
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 348 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 289
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 288 agccggcagctcttgccgcaccgcag 263
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 442 gttcttgatctcgttgtccgtcctccccggcagcc 408
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 338 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 279
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 278 agccggcagctcttgccgcaccgcag 253
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 432 gttcttgatctcgttgtccgtcctccccggcagcc 398
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 352 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 293
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 292 agccggcagctcttgccgcaccgcag 267
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 446 gttcttgatctcgttgtccgtcctccccggcagcc 412
>gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_P07 5', mRNA sequence
Length = 523
Score = 107 bits (54), Expect = 8e-022
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttgtt 865
||||||||||||||||||||||| ||| || |||| ||||| ||| ||||| ||||
Sbjct: 451 gttcttgatctcgttgtccgtcctcccaggaagcctggcggcaatggtggaccatctgtt 392
Query: 866 cccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcg 925
||||| | | ||| |||| || |||| ||| ||||| ||| |||||||||||||||
Sbjct: 391 gccgagcatggcgtggagctggatgatggcgtcctcctcctcgctggtgaagttgccgcg 332
Query: 926 cttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgcag 985
||| | |||||| || ||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 331 cttgatgtcggggcgcaggtagttgatccaccggaggcgacagctcttgccgcagcgcag 272
Query: 986 caggcc 991
||||||
Sbjct: 271 caggcc 266
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 354 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 295
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 294 agccggcagctcttgccgcaccgcag 269
Score = 52.0 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgg 835
||||||||||||||||||||||| ||||||
Sbjct: 448 gttcttgatctcgttgtccgtcctccccgg 419
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 354 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 295
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 294 agccggcagctcttgccgcaccgcag 269
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 448 gttcttgatctcgttgtccgtcctccccggcagcc 414
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 354 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 295
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 294 agccggcagctcttgccgcaccgcag 269
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 448 gttcttgatctcgttgtccgtcctccccggcagcc 414
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 342 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 283
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 282 agccggcagctcttgccgcaccgcag 257
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 436 gttcttgatctcgttgtccgtcctccccggcagcc 402
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 355 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 296
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 295 agccggcagctcttgccgcaccgcag 270
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 449 gttcttgatctcgttgtccgtcctccccggcagcc 415
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 107 bits (54), Expect = 8e-022
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 900 tcctcgtcggcggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgc 959
||||| ||| ||| ||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 220 tcctcctcgtcggagaagttgccgcgcttgatgtccggccgcaggtagttgatccaccgg 161
Query: 960 agccggcagctcttgccgcaccgcag 985
||||||||||||||||||||||||||
Sbjct: 160 agccggcagctcttgccgcaccgcag 135
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagcc 840
||||||||||||||||||||||| |||||| ||||
Sbjct: 314 gttcttgatctcgttgtccgtcctccccggcagcc 280
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 103 bits (52), Expect = 1e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcg 855
|||||||| ||||||||||||||||||||||||| ||||| || ||| ||||| | |
Sbjct: 413 tgttccagaagttcttgatctcgttgtccgtccggcccggcaggtgcgacgcgatctgag 354
Query: 856 accacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtga 915
||||| |||| ||||||| ||| ||| ||||||| |||| ||||| | || ||
Sbjct: 353 accacctgttgccgaggatctggtggagcgcgacgatgtggtcctcctcctgctgggaga 294
Query: 916 agttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgc 975
|| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 293 agcagccgcgcttgaggtcggggcggaggtagttgatccaccggaggcggcagctcttgc 234
Query: 976 cgca 979
||||
Sbjct: 233 cgca 230
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 103 bits (52), Expect = 1e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcg 855
|||||||| ||||||||||||||||||||||||| ||||| || ||| ||||| | |
Sbjct: 326 tgttccagaagttcttgatctcgttgtccgtccggcccggcaggtgcgacgcgatctgag 267
Query: 856 accacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtga 915
||||| |||| ||||||| ||| ||| ||||||| |||| ||||| | || ||
Sbjct: 266 accacctgttgccgaggatctggtggagcgcgacgatgtggtcctcctcctgctgggaga 207
Query: 916 agttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgc 975
|| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 206 agcagccgcgcttgaggtcggggcggaggtagttgatccaccggaggcggcagctcttgc 147
Query: 976 cgca 979
||||
Sbjct: 146 cgca 143
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 103 bits (52), Expect = 1e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcg 855
|||||||| ||||||||||||||||||||||||| ||||| || ||| ||||| | |
Sbjct: 422 tgttccagaagttcttgatctcgttgtccgtccggcccggcaggtgcgacgcgatctgag 363
Query: 856 accacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtga 915
||||| |||| ||||||| ||| ||| ||||||| |||| ||||| | || ||
Sbjct: 362 accacctgttgccgaggatctggtggagcgcgacgatgtggtcctcctcctgctgggaga 303
Query: 916 agttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgc 975
|| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 302 agcagccgcgcttgaggtcggggcggaggtagttgatccaccggaggcggcagctcttgc 243
Query: 976 cgca 979
||||
Sbjct: 242 cgca 239
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 103 bits (52), Expect = 1e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcg 855
|||||||| ||||||||||||||||||||||||| ||||| || ||| ||||| | |
Sbjct: 398 tgttccagaagttcttgatctcgttgtccgtccggcccggcaggtgcgacgcgatctgag 339
Query: 856 accacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtga 915
||||| |||| ||||||| ||| ||| ||||||| |||| ||||| | || ||
Sbjct: 338 accacctgttgccgaggatctggtggagcgcgacgatgtggtcctcctcctgctgggaga 279
Query: 916 agttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgc 975
|| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 278 agcagccgcgcttgaggtcggggcggaggtagttgatccaccggaggcggcagctcttgc 219
Query: 976 cgca 979
||||
Sbjct: 218 cgca 215
>gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 5', mRNA sequence
Length = 506
Score = 101 bits (51), Expect = 5e-020
Identities = 171/211 (81%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttgtt 865
||||||||||||||||||||||| ||| || |||| ||||| ||| ||||| ||||
Sbjct: 289 gttcttgatctcgttgtccgtcctcccaggaagcctggcggcaatggtggaccatctgtt 230
Query: 866 cccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcg 925
||||| | | ||| |||| || |||| | | ||||| ||| |||||||||||||||
Sbjct: 229 gccgagcatggcgtggagctggatgatggcgccctcctcctcgctggtgaagttgccgcg 170
Query: 926 cttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgcag 985
||| | |||||| || ||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 169 cttgatgtcggggcgcaggtagttgatccaccggaggcgacagctcttgccgcagcgcag 110
Query: 986 caggcccgccgccttgggcagcgaccgccag 1016
|||||| ||| || ||||||| |||||||
Sbjct: 109 caggccggcctgattcggcagcgcccgccag 79
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagc 854
|||||||||| |||||||| |||||||||||||| || || ||| | || ||||| | |
Sbjct: 341 gtgttccagtggttcttgacgtcgttgtccgtccggccgggcagctgggctgcgatcacc 282
Query: 855 gaccacttgttcccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtg 914
|||||| |||| |||| || | ||||||||||| |||| | |||||| || | |||
Sbjct: 281 gaccacctgttgccgacgacggagtgcagcttgatgatggtctgctcctcggcgtcagtg 222
Query: 915 aagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttg 974
|| | |||| |||| ||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct: 221 aactcgccgtgcttgaggtcgggccgcaggtagttggtccaccgcaggcggcagctcttc 162
Query: 975 ccgcaccgcagcag 988
||||| ||| ||||
Sbjct: 161 ccgcagcgctgcag 148
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 99.6 bits (50), Expect = 2e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 924 cgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcacc 981
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cgcttcaggtcggggcgcaggtagttgatccaccgcagccggcagctcttgccgcacc 249
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgg 835
|||||||| ||||||||||||||||||||||||| |||||
Sbjct: 434 tgttccagaagttcttgatctcgttgtccgtccggcccgg 395
>gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003P10f, mRNA sequence
Length = 859
Score = 95.6 bits (48), Expect = 3e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 914 gaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctctt 973
||||||||||||||| | ||| ||||| ||||||||||||||||| | ||||||||||||
Sbjct: 332 gaagttgccgcgcttgatgtccggccgcaggtagttgatccaccggatccggcagctctt 273
Query: 974 gccgcaccgcag 985
||||||||||||
Sbjct: 272 gccgcaccgcag 261
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 806 gttcttgatctcgttgtccgtccgccccgg 835
||||||||||||| ||||||||| ||||||
Sbjct: 442 gttcttgatctcgatgtccgtcctccccgg 413
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 91.7 bits (46), Expect = 5e-017
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 914 gaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctctt 973
|||| |||||||||| ||||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 254 gaaggtgccgcgcttgaggtccggacggaggtagttgatccaccggagccggcagctctt 195
Query: 974 gccgca 979
||||||
Sbjct: 194 gccgca 189
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 797 gttccagtagttcttgatctcgttgtccgtccgccccgg 835
||||||| ||||||||| |||||||||||| || |||||
Sbjct: 371 gttccagaagttcttgacctcgttgtccgtgcggcccgg 333
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 87.7 bits (44), Expect = 7e-016
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 920 gccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgca 979
||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1274 gccgcgcttgaggtcggggcggaggtagttgatccaccggaggcggcagctcttgccgca 1215
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 796 tgttccagtagttcttgatctcgttgtccgtccgccccgg 835
|||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1552 tgttccagaagttcttgatctcgttgtccgtccggcccgg 1513
>gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 3', mRNA sequence
Length = 710
Score = 81.8 bits (41), Expect = 5e-014
Identities = 170/212 (80%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 806 gttcttgatctcgttgtccgtccgccccgggagccgcgcggcgatgagcgaccacttgtt 865
||||||||||||||||||||||| ||| || |||| ||||| ||| ||||| ||||
Sbjct: 467 gttcttgatctcgttgtccgtcctcccaggaagcctggcggcaatggtggaccatctgtt 526
Query: 866 cccgaggaggctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcg 925
||||| | | ||| |||| || |||| | | ||||| ||| |||||||||||||||
Sbjct: 527 gccgagcatggcgtggagctggatgatggcgccctcctcctcgctggtgaagttgccgcg 586
Query: 926 cttcaggtcgggccgga-ggtagttgatccaccgcagccggcagctcttgccgcaccgca 984
||| | |||||| || | |||||||||||||||| || || |||||||||||||| ||||
Sbjct: 587 cttgatgtcggggcgcaaggtagttgatccaccggaggcgacagctcttgccgcagcgca 646
Query: 985 gcaggcccgccgccttgggcagcgaccgccag 1016
||| ||| ||| || ||||||| |||||||
Sbjct: 647 gcangccggcctgattcggcagcgcccgccag 678
>gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL101a5 5' similar to typical
P-type R2R3 Myb protein, mRNA sequence
Length = 546
Score = 81.8 bits (41), Expect = 5e-014
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 913 tgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctct 972
|||||||||||||||| | | ||||||||||||||| ||||||| |||||||||||||
Sbjct: 342 tgaagttgccgcgcttgatcnccggccggaggtagttggtccaccgaagccggcagctct 283
Query: 973 tgccgcaccgca 984
||| ||||||||
Sbjct: 282 tgctgcaccgca 271
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtccgtcc 828
|||||||||||||||||||| ||||| |||||||
Sbjct: 460 gtgttccagtagttcttgatgtcgttatccgtcc 427
>gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I244 5-PRIME, mRNA sequence
Length = 284
Score = 77.8 bits (39), Expect = 7e-013
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 876 ctgtgcagcttgacgatgaggtcgtcctcgtcggcggtgaagttgccgcgcttcaggtcg 935
||||| ||| |||||||||| || ||||||||| || || |||||| | ||| | |
Sbjct: 273 ctgtggagcctgacgatgagctcctcctcgtcgtnggagatgttgcctctcttgatcccc 214
Query: 936 ggccggaggtagttgatccaccgcagccggcagctcttgccgcacc 981
|||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 213 ggccggaggtagttgagccaccgcagccggcagctcttcccgcacc 168
>gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E05V 5',
mRNA sequence
Length = 666
Score = 75.8 bits (38), Expect = 3e-012
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 794 cgtgttccagtagttcttgatctcgttgtccgtccgccccgg 835
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 295 cgtgttccagtagttcttgatctcgttgtccgtcctccccgg 254
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 930 aggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgcag 985
|||| ||| ||||||| |||| |||| ||||| ||||||||||||||||| |||||
Sbjct: 159 aggttggggcggaggtggttggtccagcgcaggcggcagctcttgccgcagcgcag 104
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 75.8 bits (38), Expect = 3e-012
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 910 cggtgaagttgccgcgcttcaggtcgggccggaggtagttgatccaccgcagccggcagc 969
||||||||||||||||||| | | || || ||||||||| ||||||| ||||||||||
Sbjct: 191 cggtgaagttgccgcgcttgatccccgggcgcaggtagttggtccaccggagccggcagc 132
Query: 970 tcttgccgcaccgcagcaggcc 991
|||||| |||||||| ||||||
Sbjct: 131 tcttgctgcaccgcatcaggcc 110
Score = 58.0 bits (29), Expect = 7e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttcttgatctcgttgtc 823
|||||||||||||||||||||||| ||||||||
Sbjct: 310 gtgcgtgttccagtagttcttgatgtcgttgtc 278
>gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005H11f, mRNA sequence
Length = 917
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 924 cgcttcaggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgcaccgc 983
||||| ||||||||||| ||||||||| |||||| ||| ||||||||||| ||||||| |
Sbjct: 307 cgcttgaggtcgggccgcaggtagttggtccacctcaggcggcagctcttcccgcacctc 248
Query: 984 agcag 988
|||||
Sbjct: 247 agcag 243
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 278,846
Number of Sequences: 312970
Number of extensions: 278846
Number of successful extensions: 115550
Number of sequences better than 0.5: 268
Number of HSP's better than 0.5 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114312
Number of HSP's gapped (non-prelim): 1065
length of query: 1121
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1102
effective length of database: 169,188,109
effective search space: 186445296118
effective search space used: 186445296118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)